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Worm Phenotype (WP): coiling frequency variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <2>
+ + + + + 5:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + 4:   behavior variant [WBPhenotype:0000517] <2>(119|121) (119|54|20)
+ + + 3:   organism behavior variant [WBPhenotype:0000525] <20>(119|121) (119|54|20)
+ + 2:   body posture variant [WBPhenotype:0000001] <7>(15|18) (15|5|2)
+ 1:   coiling variant [WBPhenotype:0002297] <2>(8|10) (8|2|0)
0:   coiling frequency variant [WBPhenotype:0002298] <2>(8|9) (8|2|0)
- 1:   coiling frequency decreased [WBPhenotype:0002299](1|1) (1|0|0)
- 1:   coiling frequency increased [WBPhenotype:0002300](0|0) (0|1|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Transducin (alpha subunit), insertion domain0Direct
SNF-like0.00000000000001565Direct
SMAD MH1 domain0.000002511Direct
Voltage-gated potassium channels0.000003219Direct
Insulin-like0.000005175Direct
SMAD/FHA domain0.00006309Direct
cAMP-binding domain-like0.0001362Direct
Homeodomain-like0.0004628Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Transducin (alpha subunit), insertion domain0Direct
SNF-like0.00000000000005268Direct
Rhodopsin-like0.000000002528Direct
SMAD MH1 domain0.000004959Direct
Insulin-like0.00001587Direct
SMAD domain0.00002177Direct
Voltage-gated potassium channels0.00006315Direct
cAMP-binding domain0.0001942Direct
Homeodomain0.0004894Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Transducin (alpha subunit), insertion domain0Direct
SNF-like0.00000000000001227Direct
SMAD MH1 domain0.000002036Direct
Voltage-gated potassium channels0.000002613Direct
Insulin-like0.000004209Direct
SMAD/FHA domain0.00005161Direct
cAMP-binding domain-like0.0001117Direct
Homeodomain-like0.0003826Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47895,52540
  • 47895 - Transducin (alpha subunit), insertion domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48403,48403
  • 48403 - Ankyrin repeat
  • 48403 - Ankyrin repeat
  • 0.00001578Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)