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Xenopus ANatomical entity (XAN): somite

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   anatomical structure [XAO:0003000] <11>(577|733) (577|400|163)
+ + + 3:   anatomical group [XAO:0003001] <2>(414|530) (418|309|134)
+ + + 3:   embryo [XAO:0000113] <8>(134|185) (134|89|38)
+ + + 3:   whole organism [XAO:0003004] <12>(461|598) (465|335|145)
+ + 2:   musculoskeletal system [XAO:0000168] <2>(44|60) (47|28|16)
+ + 2:   primary germ layer [XAO:0003011] <4>(109|155) (109|73|30)
+ + 2:   anatomical system [XAO:0003002] <19>(283|382) (289|204|93)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(436|565) (440|325|142)
+ 1:   mesoderm [XAO:0000050] <9>(28|38) (28|13|8)
+ 1:   muscular system [XAO:0004042] <4>(28|40) (31|19|9)
+ 1:   tissue [XAO:0003040] <186>(182|250) (189|130|58)
0:   somite [XAO:0000058] <5>(8|11) (10|6|3)
- 1:   sclerotome [XAO:0000397] <21>(0|0) (0|0|0)
- 1:   trunk somite [XAO:0000314] <13>(1|2) (1|0|1)
- 1:   tail somite [XAO:0003143] <5>(0|0) (0|0|1)
- 1:   head somite [XAO:0000313] <4>(1|1) (1|1|0)
- 1:   dermomyotome [XAO:0005080] <2>(3|3) (3|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
HLH, helix-loop-helix DNA-binding domain0.00000002757Direct
PYP-like sensor domain (PAS domain)0.00004627Direct
Frizzled cysteine-rich domain0.0002478Direct
FnI-like domain0.0007911Direct
14-3-3 protein0.0009863Direct
SRF-like0.001419Inherited
Tropomyosin0.00695Inherited
Actin-like ATPase domain0.01387Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0Direct
HLH, helix-loop-helix DNA-binding domain0.00000005735Direct
Hypoxia-inducible factor Hif2a, C-terminal domain0.000158Direct
Parvalbumin0.0001878Direct
Frizzled cysteine-rich domain0.0002657Direct
14-3-3 protein0.0009298Direct
L domain0.0009298Direct
SRF-like0.001293Inherited
Actin/HSP700.002278Inherited
Tropomyosin0.003415Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
HLH, helix-loop-helix DNA-binding domain0.00000001936Direct
PYP-like sensor domain (PAS domain)0.00003383Direct
Frizzled cysteine-rich domain0.0001847Direct
FnI-like domain0.0005986Direct
14-3-3 protein0.0007478Direct
Cytokine0.0007942Direct
Homeodomain-like0.0008136Direct
SRF-like0.001082Inherited
Tropomyosin0.005421Inherited
Actin-like ATPase domain0.01093Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0Direct
    55785,55785
  • 55785 - PYP-like sensor domain (PAS domain)
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.0003328Direct
    47459,55785
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.0003766Direct
    52058,57184
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0.0007478Direct
    57184,52058
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.0007478Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.002893Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    47459,55785,55785
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 55785 - PYP-like sensor domain (PAS domain)
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.0001468Direct
    48371,48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.00223Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)