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Xenopus ANatomical entity (XAN): paraxial mesoderm

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   multicellular anatomical structure [XAO:0005002] <4>(436|565) (440|325|142)
+ + + 3:   tissue [XAO:0003040] <186>(182|250) (189|130|58)
+ + + 3:   Xenopus anatomical entity [XAO:0000000] <9>
+ + 2:   anatomical structure [XAO:0003000] <11>(577|733) (577|400|163)
+ + 2:   embryo [XAO:0000113] <8>(134|185) (134|89|38)
+ + 2:   primary germ layer [XAO:0003011] <4>(109|155) (109|73|30)
+ + 2:   whole organism [XAO:0003004] <12>(461|598) (465|335|145)
+ 1:   embryonic structure [XAO:0003042] <58>(42|52) (43|27|13)
+ 1:   mesoderm [XAO:0000050] <9>(28|38) (28|13|8)
0:   paraxial mesoderm [XAO:0000259] <1>(5|9) (5|3|2)
- 1:   presomitic mesoderm [XAO:0000057] <2>(5|9) (5|3|2)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
HLH, helix-loop-helix DNA-binding domain0.00003316Direct
Orange domain-like0.0004634Direct
Frizzled cysteine-rich domain0.009676Inherited
Cytokine0.01827Inherited
Homeodomain-like0.04565Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
HLH, helix-loop-helix DNA-binding domain0.00003188Direct
Hairy Orange domain0.0003814Direct
Glutathione peroxidase-like0.0003814Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0.002404Inherited
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0.002404Inherited
Frizzled cysteine-rich domain0.008337Inherited
Homeodomain0.009771Inherited
Fibroblast growth factors (FGF)0.01014Inherited
Forkhead DNA-binding domain0.01751Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
HLH, helix-loop-helix DNA-binding domain0.00002417Direct
Orange domain-like0.0003484Direct
Frizzled cysteine-rich domain0.00758Inherited
Cytokine0.01445Inherited
Homeodomain-like0.0374Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.0003484Direct
    57184,57184
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.002133Inherited
    52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0.002252Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57196,57184,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.0001586Direct
    57196,57196,57184
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.001837Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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