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Xenopus ANatomical entity (XAN): presumptive midbrain-hindbrain boundary

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   anatomical group [XAO:0003001] <2>(414|530) (418|309|134)
+ + + 3:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   anatomical system [XAO:0003002] <19>(283|382) (289|204|93)
+ + 2:   anatomical structure [XAO:0003000] <11>(577|733) (577|400|163)
+ + 2:   whole organism [XAO:0003004] <12>(461|598) (465|335|145)
+ + 2:   embryo [XAO:0000113] <8>(134|185) (134|89|38)
+ + 2:   nervous system [XAO:0000177] <11>(134|201) (141|114|53)
+ 1:   central nervous system [XAO:0000215] <7>(129|191) (135|108|49)
+ 1:   embryonic structure [XAO:0003042] <58>(42|52) (43|27|13)
0:   presumptive midbrain-hindbrain boundary [XAO:0004086](5|5) (5|2|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0Direct
lambda repressor-like DNA-binding domains0.000002074Direct
HLH, helix-loop-helix DNA-binding domain0.00007038Direct
Sema domain0.0002113Direct
Plexin repeat0.0004378Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain0Direct
POU-specific domain0.0000003083Direct
HLH, helix-loop-helix DNA-binding domain0.0001114Direct
Sema domain0.0001625Direct
Plexin repeat0.0005211Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0Direct
lambda repressor-like DNA-binding domains0.000001482Direct
HLH, helix-loop-helix DNA-binding domain0.00005174Direct
Sema domain0.0001572Direct
Plexin repeat0.0003288Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.0000002801Direct
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.0001572Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)