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Xenopus ANatomical entity (XAN): otic vesicle

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   anatomical group [XAO:0003001] <2>(414|530) (418|309|134)
+ + + 3:   anatomical system [XAO:0003002] <19>(283|382) (289|204|93)
+ + + 3:   whole organism [XAO:0003004] <12>(461|598) (465|335|145)
+ + + 3:   anatomical structure [XAO:0003000] <11>(577|733) (577|400|163)
+ + + 3:   nervous system [XAO:0000177] <11>(134|201) (141|114|53)
+ + 2:   sensory system [XAO:0003194] <5>(39|51) (43|25|10)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(436|565) (440|325|142)
+ 1:   tissue [XAO:0003040] <186>(182|250) (189|130|58)
+ 1:   vestibuloauditory system [XAO:0003195] <4>(17|21) (18|8|5)
0:   otic vesicle [XAO:0000006](13|14) (13|4|3)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
GINS helical bundle-like0Direct
PriA/YqbF domain0Direct
PLP-binding barrel0Direct
Alanine racemase C-terminal domain-like0Direct
Homeodomain-like0.000000000001723Direct
Frizzled cysteine-rich domain0.0000000003177Direct
HLH, helix-loop-helix DNA-binding domain0.00000001909Direct
HMG-box0.00006437Direct
SMAD MH1 domain0.0005573Direct
BRK domain-like0.000579Direct
"Winged helix" DNA-binding domain0.0006845Direct
Cytokine0.0007274Direct
Growth factor receptor domain0.0009884Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Alanine racemase-like, N-terminal domain0Direct
Eukaryotic ODC-like0Direct
Homeodomain0.00000000002223Direct
Frizzled cysteine-rich domain0.0000000006011Direct
HLH, helix-loop-helix DNA-binding domain0.00000005065Direct
ets domain0.00005871Direct
HMG-box0.00009257Direct
Tandem AAA-ATPase domain0.00009648Direct
L domain0.00009751Direct
SMAD domain0.000111Direct
Fibroblast growth factors (FGF)0.0003908Direct
BRK domain-like0.0005595Direct
SMAD MH1 domain0.0005603Direct
Hypoxia-inducible factor Hif2a, C-terminal domain0.0006722Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
PLP-binding barrel0Direct
GINS helical bundle-like0Direct
Alanine racemase C-terminal domain-like0Direct
PriA/YqbF domain0Direct
Homeodomain-like0.000000000001196Direct
Frizzled cysteine-rich domain0.0000000002215Direct
HLH, helix-loop-helix DNA-binding domain0.00000001339Direct
HMG-box0.00004726Direct
SMAD MH1 domain0.0004198Direct
BRK domain-like0.0004364Direct
"Winged helix" DNA-binding domain0.0005166Direct
Cytokine0.0005498Direct
Growth factor receptor domain0.0007496Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
51419,50621
  • 51419 - PLP-binding barrel
  • 50621 - Alanine racemase C-terminal domain-like
  • 0Direct
    52058,57184
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0.00007219Direct
    57184,52058
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.00007219Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.000658Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.00008505Direct
    52058,57184,52058
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.0004364Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)