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Xenopus ANatomical entity (XAN): hindbrain

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   anatomical group [XAO:0003001] <2>(414|530) (418|309|134)
+ + + + 4:   anatomical system [XAO:0003002] <19>(283|382) (289|204|93)
+ + + + 4:   anatomical region [XAO:0003186] <51>(370|484) (374|284|123)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   compound organ [XAO:0003041] <8>(332|444) (336|275|125)
+ + + 3:   organism subdivision [XAO:0003013] <11>(375|498) (381|292|126)
+ + + 3:   head region [XAO:0000040] <4>(178|245) (183|137|58)
+ + + 3:   whole organism [XAO:0003004] <12>(461|598) (465|335|145)
+ + + 3:   anatomical structure [XAO:0003000] <11>(577|733) (577|400|163)
+ + + 3:   nervous system [XAO:0000177] <11>(134|201) (141|114|53)
+ + 2:   head [XAO:0003024] <22>(178|244) (183|137|58)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(436|565) (440|325|142)
+ + 2:   cavitated compound organ [XAO:0003165] <21>(287|395) (292|247|114)
+ + 2:   central nervous system [XAO:0000215] <7>(129|191) (135|108|49)
+ 1:   multi-tissue structure [XAO:0003037] <131>(49|63) (53|31|15)
+ 1:   brain [XAO:0000010] <14>(79|120) (80|65|28)
0:   hindbrain [XAO:0000015] <7>(10|11) (11|2|1)
- 1:   rhombomere [XAO:0004079] <8>(1|1) (1|0|0)
- 1:   medulla oblongata [XAO:0003100] <6>(1|1) (1|0|0)
- 1:   cerebellum [XAO:0003098] <1>(0|0) (0|0|0)
- 1:   Mauthner cell [XAO:0005035](0|0) (0|0|0)
- 1:   fourth ventricle [XAO:0003099](0|0) (0|0|0)
- 1:   locus coeruleus [XAO:0004566](0|0) (0|0|0)
- 1:   rhombic lip [XAO:0004135](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0Direct
PriA/YqbF domain0Direct
Hedgehog/DD-peptidase0Direct
HLH, helix-loop-helix DNA-binding domain0.00000001405Direct
HMG-box0.0000003334Direct
Glucocorticoid receptor-like (DNA-binding domain)0.000004562Direct
Frizzled cysteine-rich domain0.0001396Direct
RNA-binding domain, RBD0.0001531Direct
BRK domain-like0.0004706Direct
Intermediate filament protein, coiled coil region0.09673Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Hedgehog (development protein), N-terminal signaling domain0Direct
Homeodomain0Direct
HLH, helix-loop-helix DNA-binding domain0.00000004988Direct
HMG-box0.0000006789Direct
Tandem AAA-ATPase domain0.00002778Direct
Frizzled cysteine-rich domain0.0001851Direct
Canonical RBD0.0003416Direct
BRK domain-like0.0004799Direct
Classic zinc finger, C2H20.0006168Direct
Histone lysine methyltransferases0.000635Direct
Intermediate filament protein, coiled coil region0.1092Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Hedgehog/DD-peptidase0Direct
Homeodomain-like0Direct
PriA/YqbF domain0Direct
HLH, helix-loop-helix DNA-binding domain0.000000009847Direct
HMG-box0.0000002356Direct
Glucocorticoid receptor-like (DNA-binding domain)0.000003271Direct
Frizzled cysteine-rich domain0.0001033Direct
RNA-binding domain, RBD0.0001134Direct
BRK domain-like0.000354Direct
SET domain0.00096Direct
Intermediate filament protein, coiled coil region0.08173Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.00008133Direct
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.0008073Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0007601Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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