SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Xenopus ANatomical entity (XAN): chordal neural plate

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   embryo [XAO:0000113] <8>(134|185) (134|89|38)
+ + + + 4:   primary germ layer [XAO:0003011] <4>(109|155) (109|73|30)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   anatomical structure [XAO:0003000] <11>(577|733) (577|400|163)
+ + + 3:   ectoderm [XAO:0000001] <15>(62|85) (62|43|11)
+ + + 3:   whole organism [XAO:0003004] <12>(461|598) (465|335|145)
+ + 2:   neuroectoderm [XAO:0000042] <9>(27|31) (27|15|5)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(436|565) (440|325|142)
+ 1:   neural plate [XAO:0000249] <10>(19|17) (19|7|3)
+ 1:   tissue [XAO:0003040] <186>(182|250) (189|130|58)
0:   chordal neural plate [XAO:0000046] <2>(6|6) (6|3|0)
- 1:   chordal neural plate border [XAO:0004103](3|3) (3|1|0)
- 1:   posterior neural fold [XAO:0005242](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0Direct
HLH, helix-loop-helix DNA-binding domain0.000000000001227Direct
lambda repressor-like DNA-binding domains0.000007333Direct
Snake toxin-like0.00001535Direct
beta-beta-alpha zinc fingers0.0002351Direct
HMG-box0.0009199Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain0Direct
HLH, helix-loop-helix DNA-binding domain0.000000000005808Direct
Extracellular domain of cell surface receptors0.000007918Direct
POU-specific domain0.00002486Direct
Classic zinc finger, C2H20.00002628Direct
Cell cycle control phosphatase, catalytic domain0.0001272Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0Direct
HLH, helix-loop-helix DNA-binding domain0.0000000000008515Direct
lambda repressor-like DNA-binding domains0.000005271Direct
Snake toxin-like0.00001109Direct
beta-beta-alpha zinc fingers0.0001752Direct
HMG-box0.0006971Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.000001168Direct
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.00001789Direct
    57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0.0002757Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)