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Xenopus ANatomical entity (XAN): presomitic mesoderm

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   embryo [XAO:0000113] <8>(134|185) (134|89|38)
+ + + 3:   anatomical group [XAO:0003001] <2>(414|530) (418|309|134)
+ + + 3:   whole organism [XAO:0003004] <12>(461|598) (465|335|145)
+ + + 3:   anatomical structure [XAO:0003000] <11>(577|733) (577|400|163)
+ + + 3:   primary germ layer [XAO:0003011] <4>(109|155) (109|73|30)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(436|565) (440|325|142)
+ + 2:   anatomical system [XAO:0003002] <19>(283|382) (289|204|93)
+ + 2:   musculoskeletal system [XAO:0000168] <2>(44|60) (47|28|16)
+ + 2:   mesoderm [XAO:0000050] <9>(28|38) (28|13|8)
+ + 2:   embryonic structure [XAO:0003042] <58>(42|52) (43|27|13)
+ 1:   muscular system [XAO:0004042] <4>(28|40) (31|19|9)
+ 1:   tissue [XAO:0003040] <186>(182|250) (189|130|58)
+ 1:   paraxial mesoderm [XAO:0000259] <1>(5|9) (5|3|2)
0:   presomitic mesoderm [XAO:0000057] <2>(5|9) (5|3|2)
- 1:   caudal presomitic mesoderm [XAO:0004619](2|2) (2|0|0)
- 1:   rostral presomitic mesoderm [XAO:0004618](2|2) (2|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
HLH, helix-loop-helix DNA-binding domain0.00000003862Direct
Cytokine0.00002426Direct
Homeodomain-like0.0001263Direct
Orange domain-like0.0002105Direct
Frizzled cysteine-rich domain0.0005012Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
HLH, helix-loop-helix DNA-binding domain0.00000006493Direct
Forkhead DNA-binding domain0.000005979Direct
Homeodomain0.000008219Direct
Fibroblast growth factors (FGF)0.00001421Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0.00003726Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0.00003726Direct
Glutathione peroxidase-like0.00003883Direct
Hairy Orange domain0.0002017Direct
Frizzled cysteine-rich domain0.000504Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
HLH, helix-loop-helix DNA-binding domain0.00000002715Direct
Cytokine0.00001761Direct
Homeodomain-like0.00009336Direct
Orange domain-like0.0001566Direct
Frizzled cysteine-rich domain0.0003769Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0.00002998Direct
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.0001566Direct
    57184,57184
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.0005108Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57196,57196,57184
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.00007371Direct
    57196,57184,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.0001401Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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