SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Xenopus ANatomical entity (XAN): branchial arch

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   anatomical structure [XAO:0003000] <11>(577|733) (577|400|163)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   whole organism [XAO:0003004] <12>(461|598) (465|335|145)
+ + + 3:   anatomical region [XAO:0003186] <51>(370|484) (374|284|123)
+ + + 3:   organism subdivision [XAO:0003013] <11>(375|498) (381|292|126)
+ + + 3:   head region [XAO:0000040] <4>(178|245) (183|137|58)
+ + + 3:   multicellular anatomical structure [XAO:0005002] <4>(436|565) (440|325|142)
+ + 2:   multi-tissue structure [XAO:0003037] <131>(49|63) (53|31|15)
+ + 2:   head [XAO:0003024] <22>(178|244) (183|137|58)
+ + 2:   pharyngeal region [XAO:0004261] <7>(19|25) (21|9|6)
+ 1:   pharyngeal arch [XAO:0000096] <3>(13|15) (14|3|3)
0:   branchial arch [XAO:0000099] <5>(4|4) (4|1|2)
- 1:   branchial arch skeleton [XAO:0003180] <4>(1|1) (1|0|0)
- 1:   branchial arch 1 [XAO:0000447] <1>(0|1) (0|0|0)
- 1:   branchial arch 2 [XAO:0000449] <1>(1|1) (1|0|0)
- 1:   branchial arch 3 [XAO:0000451] <1>(1|1) (1|0|0)
- 1:   branchial arch 4 [XAO:0000453] <1>(0|1) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Sema domain0.0003448Direct
Plexin repeat0.0004059Direct
Cystine-knot cytokines0.1601Inherited
p53-like transcription factors0.2188Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
RUNT domain0Direct
Sema domain0.0001651Direct
Plexin repeat0.0006032Direct
Transforming growth factor (TGF)-beta0.0983Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Sema domain0.0002581Direct
Plexin repeat0.0003043Direct
Cystine-knot cytokines0.1397Inherited
p53-like transcription factors0.1942Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.0002581Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.00004007Direct
    90257,90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.0007996Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)