SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Xenopus ANatomical entity (XAN): bone tissue

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + + 5:   anatomical system [XAO:0003002] <19>(283|382) (289|204|93)
+ + + + + 5:   anatomical structure [XAO:0003000] <11>(577|733) (577|400|163)
+ + + + + 5:   anatomical group [XAO:0003001] <2>(414|530) (418|309|134)
+ + + + + 5:   musculoskeletal system [XAO:0000168] <2>(44|60) (47|28|16)
+ + + + + 5:   whole organism [XAO:0003004] <12>(461|598) (465|335|145)
+ + + + 4:   multicellular anatomical structure [XAO:0005002] <4>(436|565) (440|325|142)
+ + + + 4:   skeletal system [XAO:0003060] <3>(17|17) (17|7|4)
+ + + + 4:   compound organ [XAO:0003041] <8>(332|444) (336|275|125)
+ + + + 4:   anatomical cluster [XAO:0003160] <43>(92|141) (95|75|38)
+ + + 3:   solid compound organ [XAO:0003164] <3>(23|34) (24|20|9)
+ + + 3:   skeleton [XAO:0004053] <3>(13|9) (13|4|2)
+ + + 3:   tissue [XAO:0003040] <186>(182|250) (189|130|58)
+ + 2:   connective tissue [XAO:0001017] <9>(11|8) (11|2|0)
+ + 2:   skeletal element [XAO:0004012] <8>(12|9) (12|4|2)
+ 1:   bone element [XAO:0004276] <9>(10|7) (10|4|2)
+ 1:   skeletal tissue [XAO:0004038] <5>(11|8) (11|2|0)
0:   bone tissue [XAO:0000169] <3>(9|6) (9|2|0)
- 1:   mineralized bone tissue [XAO:0004040] <2>(0|0) (0|0|0)
- 1:   periosteum [XAO:0004503] <2>(0|0) (0|0|0)
- 1:   osteoid [XAO:0004035] <1>(0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
F1F0 ATP synthase subunit C0Direct
Subunits of heterodimeric actin filament capping protein Capz0Direct
Thioredoxin-like0.00001662Direct
Actin depolymerizing proteins0.00008409Direct
Zn-binding ribosomal proteins0.00008545Direct
Translation proteins SH3-like domain0.0002117Direct
LDH C-terminal domain-like0.0005177Direct
Annexin0.0009418Direct
UBC-like0.0009708Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
F1F0 ATP synthase subunit C0Direct
DJ-1/PfpI0Direct
LDH N-terminal domain-like0.0005213Direct
Linker histone H1/H50.0005213Direct
Lactate & malate dehydrogenases, C-terminal domain0.0005213Direct
Glutathione peroxidase-like0.0006086Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
F1F0 ATP synthase subunit C0Direct
Subunits of heterodimeric actin filament capping protein Capz0Direct
Thioredoxin-like0.00001201Direct
Actin depolymerizing proteins0.0000619Direct
Zn-binding ribosomal proteins0.00006291Direct
Translation proteins SH3-like domain0.0001575Direct
LDH C-terminal domain-like0.0003895Direct
Annexin0.0007136Direct
UBC-like0.000736Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47095,47095
  • 47095 - HMG-box
  • 47095 - HMG-box
  • 0.0003895Direct
    51735,56327
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 56327 - LDH C-terminal domain-like
  • 0.0003895Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)