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Xenopus ANatomical entity (XAN): anatomical space

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + 2:   anatomical structure [XAO:0003000] <11>(577|733) (577|400|163)
+ 1:   Xenopus anatomical entity [XAO:0000000] <9>
+ 1:   whole organism [XAO:0003004] <12>(461|598) (465|335|145)
0:   anatomical space [XAO:0003190] <22>(19|23) (19|9|5)
- 1:   archenteron [XAO:0000092] <3>(5|6) (5|2|0)
- 1:   brain ventricle [XAO:0004602] <3>(0|0) (0|0|0)
- 1:   mouth [XAO:0003029] <3>(1|1) (1|0|0)
- 1:   blastocoel [XAO:0000294] <2>(1|1) (1|0|0)
- 1:   coelom [XAO:0004521] <1>(12|16) (12|5|4)
- 1:   filter chamber [XAO:0000439] <1>(0|0) (0|0|0)
- 1:   choana [XAO:0000277](0|0) (0|0|0)
- 1:   dorsal lymph space [XAO:0000374](0|0) (0|0|0)
- 1:   fenestra basicranialis [XAO:0004365](0|0) (0|0|0)
- 1:   fenestra subocularis [XAO:0004367](0|0) (0|0|0)
- 1:   medium cavity [XAO:0004525](0|0) (0|0|0)
- 1:   mesonephric sinus [XAO:0000381](0|0) (0|0|0)
- 1:   myocoelic slit [XAO:0000246](0|0) (0|0|0)
- 1:   neurocoel [XAO:0000252](0|0) (0|0|0)
- 1:   nostril [XAO:0003033](0|0) (0|0|0)
- 1:   olfactory pit [XAO:0000275](0|0) (0|0|0)
- 1:   oral cavity [XAO:0000126](0|0) (0|0|0)
- 1:   oval window [XAO:0005146](0|0) (0|0|0)
- 1:   pharyngeal cavity [XAO:0000105](0|0) (0|0|0)
- 1:   principal cavity [XAO:0004526](0|0) (0|0|0)
- 1:   pronephric sinus [XAO:0000385](0|0) (0|0|0)
- 1:   pupil [XAO:0000283](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0Direct
Nop domain0Direct
Transducin (alpha subunit), insertion domain0.0000000000006106Direct
HLH, helix-loop-helix DNA-binding domain0.0000000001255Direct
Frizzled cysteine-rich domain0.00004083Direct
Growth factor receptor domain0.00005461Direct
Cystine-knot cytokines0.00009435Direct
14-3-3 protein0.0003073Direct
Orange domain-like0.0003546Direct
"Winged helix" DNA-binding domain0.0005343Direct
Glucocorticoid receptor-like (DNA-binding domain)0.002682Inherited
Alpha-macroglobulin receptor domain0.006031Inherited
ARID-like0.01215Inherited
Clavaminate synthase-like0.08619Inherited
Tubulin C-terminal domain-like0.1059Inherited
lambda repressor-like DNA-binding domains0.1059Inherited
Tubulin nucleotide-binding domain-like0.1238Inherited
HMG-box0.1459Inherited
Thioredoxin-like0.433Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain0Direct
Nop domain0Direct
Transducin (alpha subunit), insertion domain0.0000000000008666Direct
HLH, helix-loop-helix DNA-binding domain0.0000000003506Direct
Transforming growth factor (TGF)-beta0.00000402Direct
Frizzled cysteine-rich domain0.00004771Direct
ets domain0.00007336Direct
Growth factor receptor domain0.0000752Direct
14-3-3 protein0.0002968Direct
L domain0.0002968Direct
Hairy Orange domain0.0003568Direct
Erythroid transcription factor GATA-10.0009149Direct
Class I aldolase0.0009149Direct
Forkhead DNA-binding domain0.002281Inherited
Hypoxia-inducible factor Hif2a, C-terminal domain0.002734Inherited
Glutathione peroxidase-like0.002734Inherited
Alpha-macroglobulin receptor domain0.005665Inherited
ARID domain0.01187Inherited
POU-specific domain0.0253Inherited
AAT-like0.03085Inherited
Tubulin, GTPase domain0.106Inherited
Tubulin, C-terminal domain0.106Inherited
HMG-box0.1546Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Nop domain0Direct
Homeodomain-like0Direct
Transducin (alpha subunit), insertion domain0.0000000000004235Direct
HLH, helix-loop-helix DNA-binding domain0.00000000008749Direct
Frizzled cysteine-rich domain0.00002981Direct
Growth factor receptor domain0.00004001Direct
Cystine-knot cytokines0.00006959Direct
14-3-3 protein0.0002298Direct
Orange domain-like0.0002655Direct
"Winged helix" DNA-binding domain0.0004021Direct
Glucocorticoid receptor-like (DNA-binding domain)0.002062Inherited
Alpha-macroglobulin receptor domain0.004686Inherited
ARID-like0.009547Inherited
Clavaminate synthase-like0.07218Inherited
Tubulin C-terminal domain-like0.08988Inherited
lambda repressor-like DNA-binding domains0.08988Inherited
Tubulin nucleotide-binding domain-like0.1064Inherited
HMG-box0.1266Inherited
Thioredoxin-like0.4Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52058,49265
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 0Direct
    50044,50156
  • 50044 - SH3-domain
  • 50156 - PDZ domain-like
  • 0Direct
    47895,52540
  • 47895 - Transducin (alpha subunit), insertion domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.0000000000004235Direct
    52058,57184
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0.0002298Direct
    57184,52058
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.0002298Direct
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.0002655Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0009899Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.08988Inherited
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.1316Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    52058,49265,49265
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0Direct
    57184,52058,49265
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 0Direct
    52058,57184,52058
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.0000431Direct
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.0005935Direct
    48371,48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.00169Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)