SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Xenopus ANatomical entity (XAN): dorsal thalamus

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + + 8:   anatomical group [XAO:0003001] <2>(414|530) (418|309|134)
+ + + + + + + 7:   anatomical region [XAO:0003186] <51>(370|484) (374|284|123)
+ + + + + + + 7:   anatomical system [XAO:0003002] <19>(283|382) (289|204|93)
+ + + + + + 6:   compound organ [XAO:0003041] <8>(332|444) (336|275|125)
+ + + + + + 6:   organism subdivision [XAO:0003013] <11>(375|498) (381|292|126)
+ + + + + + 6:   head region [XAO:0000040] <4>(178|245) (183|137|58)
+ + + + + + 6:   nervous system [XAO:0000177] <11>(134|201) (141|114|53)
+ + + + + 5:   central nervous system [XAO:0000215] <7>(129|191) (135|108|49)
+ + + + + 5:   cavitated compound organ [XAO:0003165] <21>(287|395) (292|247|114)
+ + + + + 5:   head [XAO:0003024] <22>(178|244) (183|137|58)
+ + + + 4:   brain [XAO:0000010] <14>(79|120) (80|65|28)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   forebrain [XAO:0000011] <5>(12|12) (13|3|3)
+ + + 3:   anatomical structure [XAO:0003000] <11>(577|733) (577|400|163)
+ + + 3:   whole organism [XAO:0003004] <12>(461|598) (465|335|145)
+ + 2:   diencephalon [XAO:0000013] <11>(3|3) (3|2|2)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(436|565) (440|325|142)
+ 1:   multi-tissue structure [XAO:0003037] <131>(49|63) (53|31|15)
+ 1:   thalamus [XAO:0004306] <6>(2|2) (2|1|0)
0:   dorsal thalamus [XAO:0004390] <1>(1|1) (1|0|0)
- 1:   habenula [XAO:0004556] <2>(0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0.0001731Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain0.0000713Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0.0001284Direct


Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)