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Xenopus DEvelopment stage (XDE): gastrula stage

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + 2:   Xenopus developmental stage [XAO:1000000] <6>
+ 1:   embryonic stage [XAO:1000012] <6>(41|60) (43|44|18)
0:   gastrula stage [XAO:1000005] <7>(6|9) (6|8|2)
- 1:   NF stage 10 [XAO:1000020](4|4) (4|4|1)
- 1:   NF stage 10.25 [XAO:1000030](0|0) (0|0|0)
- 1:   NF stage 10.5 [XAO:1000031](1|1) (1|1|1)
- 1:   NF stage 11 [XAO:1000021](0|0) (0|0|0)
- 1:   NF stage 11.5 [XAO:1000032](0|0) (0|0|0)
- 1:   NF stage 12 [XAO:1000022](0|0) (0|0|0)
- 1:   NF stage 12.5 [XAO:1000033](1|2) (1|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Hedgehog/DD-peptidase0Direct
FMT C-terminal domain-like0Direct
beta-beta-alpha zinc fingers0.00008909Direct
POZ domain0.02376Inherited
Homeodomain-like0.08058Inherited
Alkaline phosphatase-like0.1474Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Hedgehog (development protein), N-terminal signaling domain0Direct
PreBEACH PH-like domain0Direct
Pseudouridine synthase II TruB0Direct
COMT-like0Direct
Classic zinc finger, C2H20.000005719Direct
VWC domain0.04436Inherited
Homeodomain0.06033Inherited
Arylsulfatase0.1439Inherited
CUT domain0.2672Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Hedgehog/DD-peptidase0Direct
FMT C-terminal domain-like0Direct
beta-beta-alpha zinc fingers0.0000594Direct
POZ domain0.01759Inherited
Homeodomain-like0.06422Inherited
Alkaline phosphatase-like0.124Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
46689,57667
  • 46689 - Homeodomain-like
  • 57667 - beta-beta-alpha zinc fingers
  • 0Direct
    48371,101447
  • 48371 - ARM repeat
  • 101447 - Formin homology 2 domain (FH2 domain)
  • 0Direct
    82895,57424
  • 82895 - TSP-1 type 1 repeat
  • 57424 - LDL receptor-like module
  • 0Direct
    82185,82185
  • 82185 - Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
  • 82185 - Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
  • 0Direct
    117281,117281
  • 117281 - Kelch motif
  • 117281 - Kelch motif
  • 0Direct
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.00002622Direct
    57889,57889
  • 57889 - Cysteine-rich domain
  • 57889 - Cysteine-rich domain
  • 0.0002563Direct
    57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0.09828Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57667,57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.00003668Direct
    48065,50729,50044
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 50044 - SH3-domain
  • 0.1096Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)