SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Zebrafish Anatomy (ZA): central nervous system

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: ZA Hierarchy (zebrafish anatomy from ZFIN zebrafish anatomy ontology)

Shortest distance to current term (+ for parents, - for children) ZA term [ZA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   zebrafish anatomical entity [ZFA:0100000] <6>
+ + + + 4:   anatomical structure [ZFA:0000037] <16>(275|296) (275|157|73)
+ + + 3:   whole organism [ZFA:0001094] <8>(272|295) (272|155|71)
+ + + 3:   anatomical group [ZFA:0001512] <5>(178|208) (181|127|60)
+ + 2:   anatomical system [ZFA:0001439] <18>(164|193) (168|119|58)
+ 1:   nervous system [ZFA:0000396] <9>(56|58) (60|32|17)
0:   central nervous system [ZFA:0000012] <10>(27|27) (30|13|9)
- 1:   white matter [ZFA:0001682] <23>(4|3) (4|3|3)
- 1:   brain [ZFA:0000008] <12>(19|19) (20|10|7)
- 1:   spinal cord [ZFA:0000075] <12>(3|2) (4|1|0)
- 1:   floor plate [ZFA:0000022] <9>(2|3) (3|0|0)
- 1:   brainstem [ZFA:0001707] <5>(2|2) (2|2|2)
- 1:   roof plate [ZFA:0007058] <5>(0|0) (0|0|0)
- 1:   ventricular system [ZFA:0001261] <5>(1|1) (2|0|0)
- 1:   neuromere [ZFA:0001328] <2>(0|0) (0|0|0)
- 1:   neuraxis flexure [ZFA:0005593] <1>(0|0) (0|0|0)
- 1:   grey matter [ZFA:0001681](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
HIT-like0Direct
PP2C-like0Direct
Soluble quinoprotein glucose dehydrogenase0Direct
BRK domain-like0Direct
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
Composite domain of metallo-dependent hydrolases0Direct
Doublecortin (DC)0Direct
SNARE fusion complex0Direct
Cyclin-like0.0185Inherited
SMAD/FHA domain0.03957Inherited
SMAD MH1 domain0.1024Inherited
Nuclear receptor ligand-binding domain0.1513Inherited
Homeodomain-like0.2088Inherited
Subtilisin-like0.2507Inherited
Protease propeptides/inhibitors0.2507Inherited
lambda repressor-like DNA-binding domains0.2584Inherited
Fibronectin type III0.282Inherited
Cadherin-like0.2982Inherited
Ferredoxin reductase-like, C-terminal NADP-linked domain0.3334Inherited
Riboflavin synthase domain-like0.3334Inherited
beta-beta-alpha zinc fingers0.3639Inherited
Cytochrome P4500.3979Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.4223Inherited
HLH, helix-loop-helix DNA-binding domain0.5367Inherited
Class II aaRS and biotin synthetases0.5951Inherited
Immunoglobulin0.7228Inherited
PDZ domain-like0.7391Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
Platelet-derived growth factor-like0Direct
Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A0Direct
Hydantoinase (dihydropyrimidinase)0Direct
SNARE fusion complex0Direct
Doublecortin (DC)0Direct
Zf-UBP0Direct
Hydantoinase (dihydropyrimidinase), catalytic domain0Direct
Tetramerization domain of potassium channels0Direct
Long-chain cytokines0Direct
PP2C-like0Direct
BRK domain-like0Direct
POU-specific domain0.04338Inherited
SMAD MH1 domain0.09787Inherited
SMAD domain0.1319Inherited
Nuclear receptor ligand-binding domain0.1393Inherited
I set domains0.146Inherited
Nuclear receptor0.1877Inherited
Fibronectin type III0.2723Inherited
Homeodomain0.2853Inherited
Cadherin0.3642Inherited
Cytochrome P4500.3786Inherited
HLH, helix-loop-helix DNA-binding domain0.5326Inherited
PDZ domain0.5459Inherited
Classic zinc finger, C2H20.5661Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.5928Inherited
Transforming growth factor (TGF)-beta0.7551Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
BRK domain-like0Direct
Doublecortin (DC)0Direct
HIT-like0Direct
Soluble quinoprotein glucose dehydrogenase0Direct
PP2C-like0Direct
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
Composite domain of metallo-dependent hydrolases0Direct
SNARE fusion complex0Direct
Cyclin-like0.01299Inherited
SMAD/FHA domain0.02911Inherited
SMAD MH1 domain0.08167Inherited
Nuclear receptor ligand-binding domain0.126Inherited
Homeodomain-like0.179Inherited
Protease propeptides/inhibitors0.2188Inherited
Subtilisin-like0.2188Inherited
lambda repressor-like DNA-binding domains0.2269Inherited
Fibronectin type III0.2495Inherited
Cadherin-like0.266Inherited
Cystine-knot cytokines0.2689Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.2875Inherited
Ferredoxin reductase-like, C-terminal NADP-linked domain0.2998Inherited
Riboflavin synthase domain-like0.2998Inherited
beta-beta-alpha zinc fingers0.3297Inherited
Cytochrome P4500.3631Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.3875Inherited
Ankyrin repeat0.459Inherited
HLH, helix-loop-helix DNA-binding domain0.5045Inherited
Class II aaRS and biotin synthetases0.5652Inherited
Immunoglobulin0.6989Inherited
PDZ domain-like0.7164Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0Direct
    89837,89837
  • 89837 - Doublecortin (DC)
  • 89837 - Doublecortin (DC)
  • 0Direct
    103575,81296
  • 103575 - Plexin repeat
  • 81296 - E set domains
  • 0Direct
    51556,51338
  • 51556 - Metallo-dependent hydrolases
  • 51338 - Composite domain of metallo-dependent hydrolases
  • 0Direct
    54160,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0529Inherited
    49562,48350
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48350 - GTPase activation domain, GAP
  • 0.05429Inherited
    54897,52743
  • 54897 - Protease propeptides/inhibitors
  • 52743 - Subtilisin-like
  • 0.2188Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.2454Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.2465Inherited
    90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.3675Inherited
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.4033Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.6105Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,57184,57196
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 0Direct
    57196,49899,49899
  • 57196 - EGF/Laminin
  • 49899 - Concanavalin A-like lectins/glucanases
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0Direct
    54160,52540,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54160,54160,52540
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    103575,81296,81296
  • 103575 - Plexin repeat
  • 81296 - E set domains
  • 81296 - E set domains
  • 0Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.02057Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.06638Inherited
    90257,90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.145Inherited
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.1865Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)