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Zebrafish Anatomy (ZA): midbrain

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Root: ZA Hierarchy (zebrafish anatomy from ZFIN zebrafish anatomy ontology)

Shortest distance to current term (+ for parents, - for children) ZA term [ZA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   anatomical group [ZFA:0001512] <5>(178|208) (181|127|60)
+ + + + 4:   anatomical system [ZFA:0001439] <18>(164|193) (168|119|58)
+ + + + 4:   whole organism [ZFA:0001094] <8>(272|295) (272|155|71)
+ + + 3:   nervous system [ZFA:0000396] <9>(56|58) (60|32|17)
+ + + 3:   compound organ [ZFA:0000496] <12>(96|110) (100|69|30)
+ + + 3:   zebrafish anatomical entity [ZFA:0100000] <6>
+ + 2:   anatomical structure [ZFA:0000037] <16>(275|296) (275|157|73)
+ + 2:   cavitated compound organ [ZFA:0001490] <15>(78|91) (80|55|22)
+ + 2:   central nervous system [ZFA:0000012] <10>(27|27) (30|13|9)
+ 1:   brain [ZFA:0000008] <12>(19|19) (20|10|7)
+ 1:   multi-tissue structure [ZFA:0001488] <202>(69|77) (72|47|23)
0:   midbrain [ZFA:0000128] <17>(5|1) (5|2|1)
- 1:   tegmentum [ZFA:0000160] <12>(0|0) (0|0|0)
- 1:   optic tectum [ZFA:0000445] <7>(5|1) (5|2|1)
- 1:   midbrain nucleus [ZFA:0001665] <4>(0|0) (0|0|0)
- 1:   tectal ventricle [ZFA:0000159] <2>(0|0) (0|0|0)
- 1:   torus semicircularis [ZFA:0000599] <2>(0|0) (0|0|0)
- 1:   MeL [ZFA:0005211](0|0) (0|0|0)
- 1:   MeLc [ZFA:0005214](0|0) (0|0|0)
- 1:   MeLm [ZFA:0005215](0|0) (0|0|0)
- 1:   MeLr [ZFA:0005213](0|0) (0|0|0)
- 1:   MeM [ZFA:0005212](0|0) (0|0|0)
- 1:   MeM1 [ZFA:0005216](0|0) (0|0|0)
- 1:   lateral wall midbrain region [ZFA:0000906](0|0) (0|0|0)
- 1:   region of the nucleus of the medial longitudinal fascicle [ZFA:0005871](0|0) (0|0|0)
- 1:   rhombencephalic octavolateral efferent neuron [ZFA:0005805](0|0) (0|0|0)
- 1:   somatomotor neuron [ZFA:0005733](0|0) (0|0|0)
- 1:   torus longitudinalis [ZFA:0000449](0|0) (0|0|0)
- 1:   ventro-caudal cluster [ZFA:0007003](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Ferredoxin reductase-like, C-terminal NADP-linked domain0.001317Inherited
Riboflavin synthase domain-like0.001317Inherited
Cadherin-like0.002787Inherited
Protease propeptides/inhibitors0.007154Inherited
Subtilisin-like0.01209Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Cadherin0.00975Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Ferredoxin reductase-like, C-terminal NADP-linked domain0.0008172Direct
Riboflavin synthase domain-like0.0008172Direct
Cadherin-like0.001777Inherited
Protease propeptides/inhibitors0.00475Inherited
Subtilisin-like0.008261Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54897,52743
  • 54897 - Protease propeptides/inhibitors
  • 52743 - Subtilisin-like
  • 0.003356Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.005605Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.004028Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)