SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Zebrafish Anatomy (ZA): cranial cartilage

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: ZA Hierarchy (zebrafish anatomy from ZFIN zebrafish anatomy ontology)

Shortest distance to current term (+ for parents, - for children) ZA term [ZA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   zebrafish anatomical entity [ZFA:0100000] <6>
+ + + + 4:   anatomical group [ZFA:0001512] <5>(178|208) (181|127|60)
+ + + + 4:   whole organism [ZFA:0001094] <8>(272|295) (272|155|71)
+ + + + 4:   anatomical structure [ZFA:0000037] <16>(275|296) (275|157|73)
+ + + 3:   compound organ [ZFA:0000496] <12>(96|110) (100|69|30)
+ + + 3:   anatomical system [ZFA:0001439] <18>(164|193) (168|119|58)
+ + + 3:   organism subdivision [ZFA:0001308] <10>(65|72) (71|48|27)
+ + 2:   skeletal system [ZFA:0000434] <6>(8|9) (10|4|3)
+ + 2:   head [ZFA:0001114] <15>(27|34) (30|18|15)
+ + 2:   skeletal element [ZFA:0005494] <6>(6|6) (8|2|3)
+ 1:   cranium [ZFA:0000737] <11>(5|6) (7|1|1)
+ 1:   cartilage element [ZFA:0001501] <5>(4|3) (5|0|1)
0:   cranial cartilage [ZFA:0001458] <2>(4|3) (5|0|1)
- 1:   chondrocranium cartilage [ZFA:0001461] <18>(1|2) (2|0|0)
- 1:   pharyngeal arch cartilage [ZFA:0001460] <13>(4|3) (4|0|1)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Cysteine proteinases0.002674Inherited
Alkaline phosphatase-like0.002969Inherited
Multidrug efflux transporter AcrB transmembrane domain0.01395Inherited
FnI-like domain0.8416Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Ubiquitin carboxyl-terminal hydrolase, UCH0.000005481Direct
Zf-UBP0.002221Inherited
Multidrug efflux transporter AcrB transmembrane domain0.002364Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Cysteine proteinases0.001702Inherited
Alkaline phosphatase-like0.001901Inherited
Multidrug efflux transporter AcrB transmembrane domain0.00961Inherited
UBA-like0.04681Inherited
FnI-like domain0.828Inherited

(show details)
Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57196,57184,57196
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 0.2887Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)