IP3 receptor type 1 binding core, domain 2 superfamily

SCOP classification

Root:	SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:	All alpha proteins [ 46456] (284)
Fold:	alpha-alpha superhelix [ 48370] (24)
Superfamily:	IP3 receptor type 1 binding core, domain 2 [ 100909]
Families:	IP3 receptor type 1 binding core, domain 2 [ 81895]

Superfamily statistics

	Genomes (173)	Uniprot 2018_03 genome	PDB chains (SCOP 1.75)
Domains	1,449	4,540	1
Proteins	884	2,924	1

Functional annotation

General category	General
Detailed category	Protein interaction

Document: Function annotation of SCOP domain superfamilies

Mouse Phenotype (MP)

(show details)

	MP term	FDR (all)	SDMP level	Annotation (direct or inherited)
Mammalian Phenotype (MP)	abnormal muscle physiology	0.0000571	Moderately Informative	Direct
Mammalian Phenotype (MP)	abnormal behavior	1	Moderately Informative	Inherited
Mammalian Phenotype (MP)	impaired muscle contractility	0.0006225	Informative	Direct
Mammalian Phenotype (MP)	abnormal voluntary movement	0.0007552	Informative	Direct
Mammalian Phenotype (MP)	abnormal gland physiology	0.05134	Informative	Inherited

Document: MP annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details)

	ZA term	FDR (all)	SDZA level	Annotation (direct or inherited)
Zebrafish Anatomy (ZA)	cell	0.2659	Least Informative	Inherited
Zebrafish Anatomy (ZA)	portion of tissue	0	Moderately Informative	Direct
Zebrafish Anatomy (ZA)	skeletal muscle	0.0001518	Informative	Direct
Zebrafish Anatomy (ZA)	muscle cell	0.0006598	Informative	Direct

Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)

	XA term	FDR (all)	SDXA level	Annotation (direct or inherited)
Xenopus ANatomical entity (XAN)	head	0	Least Informative	Direct
Xenopus ANatomical entity (XAN)	trunk	0	Least Informative	Direct
Xenopus ANatomical entity (XAN)	tissue	0	Least Informative	Direct
Xenopus ANatomical entity (XAN)	cavitated compound organ	0	Least Informative	Direct

Document: XA annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Functional annotation · Mouse Phenotype (MP) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.

Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.

Browse and view proteins in genomes which have different domain combinations including a IP3 receptor type 1 binding core, domain 2 domain.

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.

Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the IP3 receptor type 1 binding core, domain 2 superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.

Jump to [ Top of page · SCOP classification · Functional annotation · Mouse Phenotype (MP) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Internal database links ]

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IP3 receptor type 1 binding core, domain 2 superfamily