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Home > SCOP hierarchy > ADP-ribosylglycohydrolase superfamily

ADP-ribosylglycohydrolase superfamily

SCOP classification

Root:	SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:	All alpha proteins [ 46456] (284)
Fold:	ADP-ribosylglycohydrolase [ 101477]
Superfamily:	ADP-ribosylglycohydrolase [ 101478]
Families:	ADP-ribosylglycohydrolase [ 101479]

Superfamily statistics

	Genomes (1,129)	Uniprot 2018_03 genome	PDB chains (SCOP 1.75)
Domains	2,226	17,770	1
Proteins	2,185	17,582	1

Functional annotation

General category	Metabolism
Detailed category	Other enzymes

Document: Function annotation of SCOP domain superfamilies

Enzyme Commission (EC)

(show details)

	EC term	FDR (all)	SDEO level	Annotation (direct or inherited)
Enzyme Commission (EC)	Glycosidases, i.e. enzymes hydrolyzing O- and S-gl	1	Moderately Informative	Inherited
Enzyme Commission (EC)	Hydrolyzing N-glycosyl compounds	0.0276	Informative	Inherited

Document: EC annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)

	XA term	FDR (all)	SDXA level	Annotation (direct or inherited)
Xenopus ANatomical entity (XAN)	trunk	0	Least Informative	Direct
Xenopus ANatomical entity (XAN)	tissue	0	Least Informative	Direct
Xenopus ANatomical entity (XAN)	cavitated compound organ	0	Least Informative	Direct
Xenopus ANatomical entity (XAN)	musculoskeletal system	0	Moderately Informative	Direct

Document: XA annotation of SCOP domains

Enzyme Commission (EC)

(show details)

	EC term	FDR (all)	SDEC level	Annotation (direct or inherited)
Enzyme Commission (EC)	Hydrolases	0	Least Informative	Direct
Enzyme Commission (EC)	Glycosylases	0	Moderately Informative	Direct
Enzyme Commission (EC)	Hydrolyzing N-glycosyl compounds	0.002746	Informative	Inherited

Document: EC annotation of SCOP domains

InterPro annotation

Cross references IPR005502 SSF101478 Protein matches

Abstract This family includes enzymes that perform ADP-ribosylations, such as ADP-ribosylarginine hydrolase which cleaves ADP-ribose-L-arginine [ PubMed 8349667]. The family also includes dinitrogenase reductase activating glycohydrolase [ PubMed 2506427], and most surprisingly jellyfish crystallins [ PubMed 2506427], although these proteins appear to have lost the presumed active site residues.

InterPro database

PDBeMotif information about ligands, sequence and structure motifs

Cross references

PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Enzyme Commission (EC) · Xenopus Anatomy (XA) · Enzyme Commission (EC) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.

Alignments of sequences to 3 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.

Browse and view proteins in genomes which have different domain combinations including a ADP-ribosylglycohydrolase domain.

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.

Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 3 hidden Markov models representing the ADP-ribosylglycohydrolase superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Enzyme Commission (EC) · Xenopus Anatomy (XA) · Enzyme Commission (EC) · Internal database links ]