SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


NAC domain family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (174)
Fold:   NAC domain [ 101940]
Superfamily:   NAC domain [ 101941]
Family:   NAC domain [ 101942]


Family statistics
Genomes (57) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 5,411 10,207 1
Proteins 5,396 10,186 1


Arabidopsis Plant Ontology (AP)

(
show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)portion of meristem tissue1Least InformativeInherited
Plant ANatomical entity (PAN)root1Least InformativeInherited
Plant ANatomical entity (PAN)vascular system0.000000008853InformativeDirect
Plant ANatomical entity (PAN)portion of ground tissue0.0000004904InformativeDirect
Plant ANatomical entity (PAN)root tip0.0000005919InformativeDirect
Plant ANatomical entity (PAN)stele0.00000188Highly InformativeDirect
Plant ANatomical entity (PAN)plant axis elongation zone0.0001862Highly InformativeDirect
Plant ANatomical entity (PAN)primary root0.0002573Highly InformativeDirect
Plant ANatomical entity (PAN)shoot system vascular system0.000463Highly InformativeDirect

Document: AP annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Arabidopsis Plant Ontology (AP) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 2 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a NAC domain domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Arabidopsis Plant Ontology (AP) · Internal database links ]