SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


Parvalbumin family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   EF Hand-like [ 47472] (4)
Superfamily:   EF-hand [ 47473] (11)
Family:   Parvalbumin [ 47492] (2)


Family statistics
Genomes (60) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 183 425 13
Proteins 183 424 13


Xenopus Anatomy (XA)

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show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)anatomical cluster0.1561Least InformativeInherited
Xenopus ANatomical entity (XAN)tissue0.3221Least InformativeInherited
Xenopus ANatomical entity (XAN)head0.3697Least InformativeInherited
Xenopus ANatomical entity (XAN)embryo0.4134Least InformativeInherited
Xenopus ANatomical entity (XAN)trunk0.7997Least InformativeInherited
Xenopus ANatomical entity (XAN)musculoskeletal system0.009958Moderately InformativeInherited
Xenopus ANatomical entity (XAN)mesoderm0.002505InformativeInherited
Xenopus ANatomical entity (XAN)muscle0.006558InformativeInherited
Xenopus ANatomical entity (XAN)trunk musculature0.000009793Highly InformativeDirect
Xenopus ANatomical entity (XAN)somite0.0001878Highly InformativeDirect
Xenopus DEvelopment stage (XDE)post-embryonic stage0Least InformativeDirect

Document: XA annotation of SCOP domains

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Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 174 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a EF-hand domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Xenopus Anatomy (XA) · Internal database links ]