SUPERFAMILY 1.75 HMM library and genome assignments server

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Lipovitellin-phosvitin complex, superhelical domain family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   alpha-alpha superhelix [ 48370] (24)
Superfamily:   Lipovitellin-phosvitin complex, superhelical domain [ 48431]
Family:   Lipovitellin-phosvitin complex, superhelical domain [ 48432]


Family statistics
Genomes (29) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 112 430 1
Proteins 112 427 1


Worm Phenotype (WP)

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show details)
WP termFDR (all)SDWP levelAnnotation (direct or inherited)
Worm Phenotype (WP)cell physiology variant0Least InformativeDirect
Worm Phenotype (WP)organism environmental stimulus response variant0Least InformativeDirect
Worm Phenotype (WP)organism metabolism processing variant0.02145Least InformativeInherited
Worm Phenotype (WP)organism behavior variant0.1298Least InformativeInherited
Worm Phenotype (WP)cell homeostasis metabolism variant0Moderately InformativeDirect
Worm Phenotype (WP)organism stress response variant0Moderately InformativeDirect
Worm Phenotype (WP)chemical response variant0.05706Moderately InformativeInherited
Worm Phenotype (WP)cell stress response variant0InformativeDirect
Worm Phenotype (WP)life span variant0InformativeDirect
Worm Phenotype (WP)organism pathogen response variant0InformativeDirect
Worm Phenotype (WP)avoids bacterial lawn0.0001123InformativeDirect
Worm Phenotype (WP)protein metabolism variant0.01569InformativeInherited
Worm Phenotype (WP)shortened life span0Highly InformativeDirect
Worm Phenotype (WP)pathogen susceptibility increased0Highly InformativeDirect
Worm Phenotype (WP)unfolded protein response variant0.00000005475Highly InformativeDirect
Worm Phenotype (WP)epithelial system physiology variant0.00001297Highly InformativeDirect

Document: WP annotation of SCOP domains

Zebrafish Anatomy (ZA)

(show details)
ZA termFDR (all)SDZA levelAnnotation (direct or inherited)
Zebrafish Anatomy (ZA)organism subdivision0Least InformativeDirect
Zebrafish Anatomy (ZA)multi-tissue structure0Least InformativeDirect
Zebrafish Anatomy (ZA)cavitated compound organ0Least InformativeDirect

Document: ZA annotation of SCOP domains

Xenopus Anatomy (XA)

(show details)
XA termFDR (all)SDXA levelAnnotation (direct or inherited)
Xenopus ANatomical entity (XAN)anatomical cluster0Least InformativeDirect
Xenopus ANatomical entity (XAN)urogenital system0Least InformativeDirect
Xenopus ANatomical entity (XAN)trunk0Least InformativeDirect
Xenopus ANatomical entity (XAN)cavitated compound organ0Least InformativeDirect
Xenopus ANatomical entity (XAN)testis0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)alimentary system0Moderately InformativeDirect
Xenopus ANatomical entity (XAN)viscus0Moderately InformativeDirect

Document: XA annotation of SCOP domains

Jump to [ Top of page · SCOP classification · Worm Phenotype (WP) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) ]

Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Lipovitellin-phosvitin complex, superhelical domain domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Worm Phenotype (WP) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Internal database links ]