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Galactose-binding domain-like superfamily
SCOP classification
| Root: | SCOP hierarchy in SUPERFAMILY [ 0] (11) |
| Class: | All beta proteins [ 48724] (174) |
| Fold: | Galactose-binding domain-like [ 49784] |
| Superfamily: | Galactose-binding domain-like [ 49785] (32) |
| Families: | Galactose-binding domain [ 49786] (2) |
| | Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) [ 49791] (3) |
| | APC10-like [ 69210] (2) |
| | delta-Endotoxin, C-terminal domain [ 49796] |
| | Ephrin receptor ligand binding domain [ 49800] (2) |
| | beta-Galactosidase/glucuronidase, N-terminal domain [ 49803] (4) |
| | Chondroitin ABC lyase I, N-terminal domain [ 89236] |
| | CBM4/9 [ 74893] (3) |
| | Family 6 carbohydrate binding module, CBM6 [ 69213] (4) |
| | CBM15 [ 69216] |
| | Family 17 carbohydrate binding module, CBM17 [ 69219] |
| | CBM22 [ 49811] |
| | Family 27 carbohydrate binding module, CBM27 [ 89241] (2) |
| | Family 29 carbohydrate binding module, CBM29 [ 89244] |
| | Fucose binding lectin [ 74896] |
| | N-terminal domain of xrcc1 [ 49814] |
| | F-box associated region, FBA [ 101585] |
| | Allantoicase repeat [ 101588] |
| | PepX C-terminal domain-like [ 69222] (3) |
| | PA-IL, galactose-binding lectin 1 [ 82022] |
| | Proprotein convertase P-domain [ 89249] (3) |
| | Family 28 carbohydrate binding module, CBM28 [ 110122] |
| | Family 30 carbohydrate binding module, CBM30 (PKD repeat) [ 110125] |
| | Rhamnogalacturonase B, RhgB, C-terminal domain [ 110128] |
| | Hypothetical protein AT3g04780/F7O18 27 [ 117108] |
| | Beta-galactosidase LacA, domains 4 and 5 [ 117111] |
| | Family 36 carbohydrate binding module, CBM36 [ 117114] |
| | Extended PAW domain [ 141113] |
| | CBM11 [ 141116] |
| | beta-mannanase CBM [ 141119] |
| | YxiM N-terminal domain-like [ 158963] |
| | NPCBM-like [ 158966] (2) |
Superfamily statistics
Functional annotation
| General category | Metabolism |
| Detailed category | Carbohydrate metabolism and transport |
Document: Function annotation of SCOP domain superfamilies
Enzyme Commission (EC) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: EC annotation of SCOP domains
Disease Ontology (DO) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: DO annotation of SCOP domains
Human Phenotype (HP) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: HP annotation of SCOP domains
Mouse Phenotype (MP) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: MP annotation of SCOP domains
Worm Phenotype (WP) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: WP annotation of SCOP domains
Yeast Phenotype (YP) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: YP annotation of SCOP domains
Fly Anatomy (FA) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: FA annotation of SCOP domains
Zebrafish Anatomy (ZA) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: ZA annotation of SCOP domains
Xenopus Anatomy (XA) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: XA annotation of SCOP domains
Arabidopsis Plant Ontology (AP) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: AP annotation of SCOP domains
Enzyme Commission (EC) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: EC annotation of SCOP domains
InterPro annotation
InterPro database
PDBeMotif information about ligands, sequence and structure motifs
PDBeMotif resource
Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) ]
Internal database links
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Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry
out SCOP domain assignments to all genomes at the superfamily level.
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Alignments of sequences to 111 models
in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical
are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.
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Browse and view proteins in genomes which have
different domain combinations including a Galactose-binding domain-like domain.
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Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.
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Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.
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There are 111 hidden Markov models representing the Galactose-binding domain-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.
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Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · Internal database links ]
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