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Galactose-binding domain-like superfamily
SCOP classification
Root: | SCOP hierarchy in SUPERFAMILY [ 0] (11) |
Class: | All beta proteins [ 48724] (174) |
Fold: | Galactose-binding domain-like [ 49784] |
Superfamily: | Galactose-binding domain-like [ 49785] (32) |
Families: | Galactose-binding domain [ 49786] (2) |
| Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) [ 49791] (3) |
| APC10-like [ 69210] (2) |
| delta-Endotoxin, C-terminal domain [ 49796] |
| Ephrin receptor ligand binding domain [ 49800] (2) |
| beta-Galactosidase/glucuronidase, N-terminal domain [ 49803] (4) |
| Chondroitin ABC lyase I, N-terminal domain [ 89236] |
| CBM4/9 [ 74893] (3) |
| Family 6 carbohydrate binding module, CBM6 [ 69213] (4) |
| CBM15 [ 69216] |
| Family 17 carbohydrate binding module, CBM17 [ 69219] |
| CBM22 [ 49811] |
| Family 27 carbohydrate binding module, CBM27 [ 89241] (2) |
| Family 29 carbohydrate binding module, CBM29 [ 89244] |
| Fucose binding lectin [ 74896] |
| N-terminal domain of xrcc1 [ 49814] |
| F-box associated region, FBA [ 101585] |
| Allantoicase repeat [ 101588] |
| PepX C-terminal domain-like [ 69222] (3) |
| PA-IL, galactose-binding lectin 1 [ 82022] |
| Proprotein convertase P-domain [ 89249] (3) |
| Family 28 carbohydrate binding module, CBM28 [ 110122] |
| Family 30 carbohydrate binding module, CBM30 (PKD repeat) [ 110125] |
| Rhamnogalacturonase B, RhgB, C-terminal domain [ 110128] |
| Hypothetical protein AT3g04780/F7O18 27 [ 117108] |
| Beta-galactosidase LacA, domains 4 and 5 [ 117111] |
| Family 36 carbohydrate binding module, CBM36 [ 117114] |
| Extended PAW domain [ 141113] |
| CBM11 [ 141116] |
| beta-mannanase CBM [ 141119] |
| YxiM N-terminal domain-like [ 158963] |
| NPCBM-like [ 158966] (2) |
Superfamily statistics
Functional annotation
General category | Metabolism |
Detailed category | Carbohydrate metabolism and transport |
Document: Function annotation of SCOP domain superfamilies
Enzyme Commission (EC) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: EC annotation of SCOP domains
Disease Ontology (DO) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: DO annotation of SCOP domains
Human Phenotype (HP) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: HP annotation of SCOP domains
Mouse Phenotype (MP) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: MP annotation of SCOP domains
Worm Phenotype (WP) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: WP annotation of SCOP domains
Yeast Phenotype (YP) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: YP annotation of SCOP domains
Fly Anatomy (FA) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: FA annotation of SCOP domains
Zebrafish Anatomy (ZA) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: ZA annotation of SCOP domains
Xenopus Anatomy (XA) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: XA annotation of SCOP domains
Arabidopsis Plant Ontology (AP) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: AP annotation of SCOP domains
Enzyme Commission (EC) (show details)
Highlighted in gray are those with FDR_all>0.001
Document: EC annotation of SCOP domains
InterPro annotation
InterPro database
PDBeMotif information about ligands, sequence and structure motifs
PDBeMotif resource
Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) ]
Internal database links
Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry
out SCOP domain assignments to all genomes at the superfamily level.
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Alignments of sequences to 111 models
in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical
are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.
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Browse and view proteins in genomes which have
different domain combinations including a Galactose-binding domain-like domain.
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Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.
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Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.
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There are 111 hidden Markov models representing the Galactose-binding domain-like superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.
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Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Enzyme Commission (EC) · Disease Ontology (DO) · Human Phenotype (HP) · Mouse Phenotype (MP) · Worm Phenotype (WP) · Yeast Phenotype (YP) · Fly Anatomy (FA) · Zebrafish Anatomy (ZA) · Xenopus Anatomy (XA) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · Internal database links ]
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