SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.


Defensin family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Small proteins [ 56992] (90)
Fold:   Defensin-like [ 57391]
Superfamily:   Defensin-like [ 57392] (3)
Family:   Defensin [ 57393] (10)


Family statistics
Genomes (0) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 0 60 5
Proteins 0 60 5


Disease Ontology (DO)

(
show details)
DO termFDR (all)SDDO levelAnnotation (direct or inherited)
Disease Ontology (DO)organ system cancer0.163Least InformativeInherited
Disease Ontology (DO)disease by infectious agent0Moderately InformativeDirect
Disease Ontology (DO)gastrointestinal system disease0.001644Moderately InformativeInherited
Disease Ontology (DO)hematologic cancer0.004647Moderately InformativeInherited
Disease Ontology (DO)integumentary system disease0.01109Moderately InformativeInherited
Disease Ontology (DO)periodontal disease0.000003543InformativeDirect
Disease Ontology (DO)lymphoma0.005317InformativeInherited
Disease Ontology (DO)mature T-cell and NK-cell lymphoma0.000007471Highly InformativeDirect
Disease Ontology (DO)gastritis0.00001042Highly InformativeDirect
Disease Ontology (DO)atopic dermatitis0.0001396Highly InformativeDirect

Document: DO annotation of SCOP domains

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Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 23 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Defensin-like domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Disease Ontology (DO) · Internal database links ]