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Home > SCOP hierarchy > Cell wall binding repeat superfamily

Cell wall binding repeat superfamily

SCOP classification

Root:	SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:	All beta proteins [ 48724] (174)
Fold:	beta-hairpin stack [ 69359]
Superfamily:	Cell wall binding repeat [ 69360]
Families:	Cell wall binding repeat [ 69361] (3)

Superfamily statistics

	Genomes (307)	Uniprot 2018_03 genome	PDB chains (SCOP 1.75)
Domains	2,234	25,934	9
Proteins	1,470	18,052	9

Functional annotation

General category	Metabolism
Detailed category	Coenzyme metabolism and transport

Document: Function annotation of SCOP domain superfamilies

Enzyme Commission (EC)

(show details)

	EC term	FDR (all)	SDEO level	Annotation (direct or inherited)
Enzyme Commission (EC)	Glycosyltransferases	0.0000002379	Moderately Informative	Direct

Document: EC annotation of SCOP domains

Enzyme Commission (EC)

(show details)

	EC term	FDR (all)	SDEC level	Annotation (direct or inherited)
Enzyme Commission (EC)	Hydrolases	0.001772	Least Informative	Inherited
Enzyme Commission (EC)	Glycosyltransferases	0.0000003808	Moderately Informative	Direct
Enzyme Commission (EC)	Glycosylases	0.0004612	Moderately Informative	Direct
Enzyme Commission (EC)	Acting on carbon-nitrogen bonds, other than peptide bonds	0.06938	Moderately Informative	Inherited
Enzyme Commission (EC)	Hexosyltransferases	0.0000000006819	Informative	Direct
Enzyme Commission (EC)	In linear amides	0.0001696	Informative	Direct
Enzyme Commission (EC)	N-acetylmuramoyl-L-alanine amidase	0.00000000003781	Highly Informative	Direct

Document: EC annotation of SCOP domains

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Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.

Alignments of sequences to 4 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.

Browse and view proteins in genomes which have different domain combinations including a Cell wall binding repeat domain.

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.

Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 4 hidden Markov models representing the Cell wall binding repeat superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.

Jump to [ Top of page · SCOP classification · Functional annotation · Enzyme Commission (EC) · Enzyme Commission (EC) · Internal database links ]