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Home > SCOP hierarchy > Glutamyl tRNA-reductase catalytic, N-terminal domain superfamily

Glutamyl tRNA-reductase catalytic, N-terminal domain superfamily

SCOP classification

Root:	SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:	Alpha and beta proteins (a+b) [ 53931] (376)
Fold:	Ferredoxin-like [ 54861] (59)
Superfamily:	Glutamyl tRNA-reductase catalytic, N-terminal domain [ 69742]
Families:	Glutamyl tRNA-reductase catalytic, N-terminal domain [ 69743]

Superfamily statistics

	Genomes (1,978)	Uniprot 2018_03 genome	PDB chains (SCOP 1.75)
Domains	2,113	15,219	1
Proteins	2,113	15,217	1

Functional annotation

General category	Metabolism
Detailed category	Other enzymes

Document: Function annotation of SCOP domain superfamilies

Enzyme Commission (EC)

(show details)

	EC term	FDR (all)	SDEO level	Annotation (direct or inherited)
Enzyme Commission (EC)	Oxidoreductases	0	Least Informative	Direct
Enzyme Commission (EC)	Acting on the aldehyde or oxo group of donors	0	Moderately Informative	Direct
Enzyme Commission (EC)	With NAD(+) or NADP(+) as acceptor	0	Informative	Direct
Enzyme Commission (EC)	Glutamyl-tRNA reductase	0	Highly Informative	Direct

Document: EC annotation of SCOP domains

Arabidopsis Plant Ontology (AP)

(show details)

	AP term	FDR (all)	SDAP level	Annotation (direct or inherited)
Plant ANatomical entity (PAN)	flower	0	Least Informative	Direct
Plant ANatomical entity (PAN)	pollen tube cell	0	Informative	Direct

Document: AP annotation of SCOP domains

Enzyme Commission (EC)

(show details)

	EC term	FDR (all)	SDEC level	Annotation (direct or inherited)
Enzyme Commission (EC)	Oxidoreductases	0	Least Informative	Direct
Enzyme Commission (EC)	Acting on the aldehyde or oxo group of donors	0	Informative	Direct
Enzyme Commission (EC)	With NAD(+) or NADP(+) as acceptor	0	Highly Informative	Direct

Document: EC annotation of SCOP domains

InterPro annotation

Cross references IPR015895 SSF69742 Protein matches

Abstract
This entry represents the N-terminal domain of glutamyl-tRNA reductase , which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway [ PubMed 11215515, PubMed 1502723]. The enzyme requires NADPH as a cofactor.

InterPro database

PDBeMotif information about ligands, sequence and structure motifs

Cross references

PDB entries
Ligand binding statistics
Nucleic-acid binding statistics
Occurrence of secondary structure elements
Occurrence of small 3D structural motifs

PDBeMotif resource

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Enzyme Commission (EC) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) ]

Internal database links

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.

Alignments of sequences to 1 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.

Browse and view proteins in genomes which have different domain combinations including a Glutamyl tRNA-reductase catalytic, N-terminal domain domain.

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.

Explore domain occurrence network where nodes represent genomes and edges are domain architectures (shared between genomes) containing the superfamily of interest.

There are 1 hidden Markov models representing the Glutamyl tRNA-reductase catalytic, N-terminal domain superfamily. Information on how the models are built, and plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be inspected.

Jump to [ Top of page · SCOP classification · InterPro annotation · PDBeMotif links · Functional annotation · Enzyme Commission (EC) · Arabidopsis Plant Ontology (AP) · Enzyme Commission (EC) · Internal database links ]