SUPERFAMILY 1.75 HMM library and genome assignments server

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GARP response regulators family

SCOP classification
Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All alpha proteins [ 46456] (284)
Fold:   DNA/RNA-binding 3-helical bundle [ 46688] (14)
Superfamily:   Homeodomain-like [ 46689] (19)
Family:   GARP response regulators [ 81683]


Family statistics
Genomes (4) Uniprot 2018_03 genome PDB chains (SCOP 1.75)
Domains 4 12 1
Proteins 4 12 1


Arabidopsis Plant Ontology (AP)

(
show details)
AP termFDR (all)SDAP levelAnnotation (direct or inherited)
Plant ANatomical entity (PAN)vascular leaf0.1087Least InformativeInherited
Plant ANatomical entity (PAN)portion of meristem tissue0.9522Least InformativeInherited
Plant ANatomical entity (PAN)vascular system0.00000153InformativeDirect
Plant ANatomical entity (PAN)juvenile vascular leaf0.000000000002676Highly InformativeDirect
Plant ANatomical entity (PAN)shoot meristem0.0000003284Highly InformativeDirect
Plant ANatomical entity (PAN)phloem0.000001138Highly InformativeDirect
Plant ANatomical entity (PAN)shoot system vascular system0.000006903Highly InformativeDirect
Plant ANatomical entity (PAN)trichome0.0009495Highly InformativeDirect

Document: AP annotation of SCOP domains

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Internal database links

   
Superfamily level     Family level

Browse genome assignments for this superfamily. The SUPERFAMILY hidden Markov model library has been used to carry out SCOP domain assignments to all genomes at the superfamily level.


   
Superfamily level     Family level

Alignments of sequences to 187 models in this superfamily are available by clicking on the 'Alignments' icon above. PDB sequences less than 40% identical are shown by default, but any other sequence(s) may be aligned. Select PDB sequences, genome sequences, or paste in or upload your own sequences.


Superfamily level

Browse and view proteins in genomes which have different domain combinations including a Homeodomain-like domain.


   
Superfamily level     Family level

Examine the distribution of domain superfamilies, or families, across the major taxonomic kingdoms or genomes within a kingdom. This gives an immediate impression of how superfamilies, or families, are restricted to certain kingdoms of life.


Jump to [ Top of page · SCOP classification · Arabidopsis Plant Ontology (AP) · Internal database links ]