SUPERFAMILY 1.75 HMM library and genome assignments server

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SUPERFAMILY Assignments for Genomes and Sequence Collections

We provide assignments for 3242 distinct organisms.

Model Eukaryotes (432) animals (138), fungi (173), plants (66) and protists (55)
Model Prokaryotes (1271) model bacteria (1150) and archaea (121)
Eukaryote strains (58);
Prokaryote strains (1481) 		animals (5), fungi (46), plants (3) and protists (4);
bacterial (1438) and archaeal (43)
Longest transcript per gene (61) eukaryote genomes with splice variants removed
Others (20);
Sequence collections (141) 		incomplete, low coverage or early release genomes;
UniProt, PDB, viral sequences etc
(show info)

Email superfamily@cs.bris.ac.uk to have a genome added and/or analysed.

Eukaryotes
Category Organism
Animals Vertebrates Mammals Homo sapiens 76_38   (Man)  
Pan troglodytes 76_2.1.4   (Chimpanzee)  
Gorilla gorilla 76_3.1   (Gorilla)  
Pongo abelii 76_2   (Orang utan)  
Nomascus leucogenys 76_1.0   (White-cheeked Gibbon)  
Papio anubis 76   (Baboon)  
Macaca mulatta 76_1   (Rhesus macaque)  
Callithrix jacchus 76_3.2.1   (Common marmoset)  
Otolemur garnettii 76_3   (Small-eared galago)  
Microcebus murinus 76_1   (Grey mouse lemur)  
Rattus norvegicus 76_5.0   (Brown rat)  
Mus musculus 76_38   (Mouse)  
Dipodomys ordii 76_1   (Ord's kangaroo rat)  
Ictidomys tridecemlineatus 76_2   (Thirteen-lined ground squirrel)  
Heterocephalus glaber v1.7-2   (Naked mole rat)  
Cavia porcellus 76_3   (Guinea pig)  
Oryctolagus cuniculus 76_2   (Domestic rabbit)  
Ochotona princeps 76   (Southern American pika)  
Tupaia belangeri 76   (Common tree shrew)  
Sus scrofa 76_10.2   (Pigs)  
Bos taurus 76_3.1   (Bovine)  
Ovis aries 76_3.1   (Domestic sheep)  
Vicugna pacos 76_1   (Alpaca)  
Tursiops truncatus 76_1   (Atlantic bottle-nosed dolphin)  
Mustela putorius furo 76_1.0   (Black ferret)  
Ailuropoda melanoleuca 76_1   (Giant panda)  
Canis familiaris 76_3.1   (Dogs)  
Felis catus 76_6.2   (Cat)  
Equus caballus 76_2   (Domestic horse)  
Myotis lucifugus 76_2.0   (Little brown bat)  
Pteropus vampyrus 76_1   (Large flying fox)  
Sorex araneus 76_1   (Eurasian shrew)  
Erinaceus europaeus 76   (Common hedgehog)  
Procavia capensis 76_1   (Cape hyrax)  
Loxodonta africana 76_3   (African bush elephant)  
Echinops telfairi 76   (Lesser hedgehog tenrec)  
Dasypus novemcinctus 76_2   (Nine-banded armadillo)  
Choloepus hoffmanni 76_1   (Hoffmann's two-toed sloth)  
Macropus eugenii 76_1.0   (Tammar wallaby)  
Sarcophilus harrisii 76_7.0   (Tasmanian devil)  
Monodelphis domestica 76_5   (Gray short-tailed opossum)  
Ornithorhynchus anatinus 76_5   (Duck-billed platypus)  
Birds Meleagris gallopavo 76_2   (Common turkey)  
Gallus gallus 76_4   (Bantam)  
Anas platyrhynchos 76_1.0   (Duck)  
Taeniopygia guttata 76_3.2.4   (Zebra finch)  
Ficedula albicollis 76_1.0   (Collared flycatcher)  
Reptiles Pelodiscus sinensis 76_1.0   (Chinese softshell turtle)  
Amphibians Xenopus laevis   (Clawed frog)  
Xenopus tropicalis 76_4.2   (Western clawed frog)  
Fishes Lepisosteus oculatus 76   (Spotted gar)  
Gadus morhua 76_1   (Atlantic cod)  
Tetraodon nigroviridis 76_8   (Spotted green pufferfish)  
Takifugu rubripes 76_4   (Tiger puffer)  
Gasterosteus aculeatus 76_1   (Three spined stickleback)  
Oryzias latipes 76_1   (Japanese rice fish)  
Xiphophorus maculatus 76_4.4.2   (Southern platyfish)  
Poecilia formosa 76   (Amazon molly)  
Oreochromis niloticus 76_1.0   (Nile tilapia)  
Astyanax mexicanus 76   (Blind cave fish)  
Danio rerio 76_9   (Leopard danio)  
Vertebrates/Others Petromyzon marinus 76_7.0   (Marine lamprey)  
Anolis carolinensis 76_2.0   (Carolina anole)  
Latimeria chalumnae 76_1   (Coelacanth)  
Ascidians Ciona savignyi 76_2.0   (Transparent tunicate)  
Ciona intestinalis 76   (Sea vase)  
Echinoderms Strongylocentrotus purpuratus v3.1   (Purple urchin)  
Annelida Helobdella robusta  
Capitella sp. I  
Arthropods Insects Danaus plexippus OGS1.0   (American monarch)  
Heliconius melpomene   (Common postman)  
Bombyx mori   (Silk moth)  
Nasonia vitripennis   (Jewel wasp)  
Apis mellifera 38.2d   (Bee)  
Harpegnathos saltator v3.3   (Jerdon's jumping ant)  
Linepithema humile v1.1   (Argentine ant)  
Pogonomyrmex barbatus v1.2   (Red harvester ant)  
Solenopsis invicta v.2.2.3   (Imported red fire ant)  
Acromyrmex echinatior v3.8   (Panamanian leafcutter ant)  
Atta cephalotes v1.1  
Camponotus floridanus v3.3   (Florida carpenter ant)  
Lucilia cuprina   (Greenbottle fly)  
Drosophila grimshawi 1.3  
Drosophila willistoni 1.3  
Drosophila pseudoobscura 2.13  
Drosophila persimilis 1.3  
Drosophila suzukii  
Drosophila yakuba 1.3  
Drosophila simulans 1.3  
Drosophila sechellia 1.3  
Drosophila melanogaster 76_5   (Fruit fly)  
Drosophila erecta 1.3  
Drosophila ananassae 1.3  
Drosophila virilis 1.2  
Drosophila mojavensis 1.3  
Megaselia scalaris 22  
Aedes aegypti 55   (Yellow fever mosquito)  
Culex pipiens quinquefasciatus   (Southern house mosquito)  
Anopheles darlingi 22   (American malaria mosquito)  
Anopheles gambiae 49_3j   (African malaria mosquito)  
Tribolium castaneum 3.0   (Rust-red flour beetle)  
Pediculus humanus corporis   (Human body lice)  
Acyrthosiphon pisum   (Pea aphid)  
Rhodnius prolixus 22  
Crustaceans Daphnia pulex   (Common water flea)  
Mites and ticks Sarcoptes scabiei  
Tetranychus urticae   (Red spider mite)  
Ixodes scapularis   (Blacklegged tick)  
Arthropods/Others Strigamia maritima 22  
Mollusks Octopus bimaculoides 280  
Crassostrea gigas 22   (Pacific oyster)  
Lottia gigantea   (Owl limpet)  
Nematodes Pristionchus pacificus  
Meloidogyne incognita   (Southern root-knot nematode)  
Meloidogyne hapla  
Onchocerca volvulus 22  
Brugia malayi WS250   (Agent of lymphatic filariasis)  
Caenorhabditis japonica  
Caenorhabditis brenneri  
Caenorhabditis remanei  
Caenorhabditis elegans 76_235   (Roundworm)  
Caenorhabditis briggsae 2  
Trichinella spiralis 22  
Rotifers Adineta vaga  
Flatworms Hymenolepis microstoma  
Echinococcus multilocularis  
Echinococcus granulosus  
Taenia solium   (Pig tapeworm)  
Schistosoma mansoni  
Cnidarians Thelohanellus kitauei  
Acropora digitifera v1.0  
Nematostella vectensis 1.0   (Starlet sea anemone)  
Hydra vulgaris  
Placozoans Trichoplax adhaerens  
Animals/Others Saccoglossus kowalevskii v3.0  
Oikopleura dioica  
Mnemiopsis leidyi   (American comb jelly)  
Amphimedon queenslandica  
Plants Eudicots Mustard family Thellungiella halophila v173  
Brassica rapa Chiifu-401 1.2   (Field mustard)  
Capsella rubella v183  
Arabidopsis lyrata   (Lyrate rockcress)  
Arabidopsis thaliana 10   (Mouse-ear cress)  
Papaya family Carica papaya   (Mamon)  
Mallow family Theobroma cacao B97-61/B2 v1   (Chocolate)  
Gossypium raimondii v221  
Rue family Citrus clementina v165  
Citrus sinensis v154   (Apfelsine)  
Pea family Medicago truncatula   (Barrel medic)  
Phaseolus vulgaris v186   (French bean)  
Glycine max v109   (Soybeans)  
Rose family Fragaria vesca   (Alpine strawberry)  
Malus domestica v196   (Apple tree)  
Prunus persica v139   (Peach)  
Willow family Populus trichocarpa v156   (Western balsam poplar)  
Spurge family Manihot esculenta v147   (Manioc)  
Nightshade family Solanum lycopersicum v.2.3   (Tomato)  
Solanum tuberosum   (Potatoes)  
Chinese gooseberry family Actinidia chinensis Hongyang  
Grape family Vitis vinifera   (Wine grape)  
Buttercup family Aquilegia coerulea v195  
Eudicots/Others Eucalyptus grandis v201   (Rose gum)  
Cucumis sativus v122   (Cucumbers)  
Linum usitatissimum v200   (Flax)  
Mimulus guttatus v140   (Common monkey flower)  
Monocots Grass family Triticum urartu 22  
Triticum aestivum 22   (Canadian hard winter wheat)  
Aegilops tauschii 22  
Brachypodium distachyon   (Annual false brome)  
Oryza barthii 22   (African wild rice)  
Oryza meridionalis 22  
Oryza glumaepatula 22  
Oryza glaberrima   (African rice)  
Oryza punctata 22  
Oryza nivara 22  
Oryza brachyantha 22   (Malo sina)  
Oryza sativa ssp. japonica 5.0   (Japonica rice)  
Oryza sativa v193   (Red rice)  
Phyllostachys heterocyclavar. pubescens   (Kikko-chiku)  
Panicum virgatum v202   (Switchgrass)  
Setaria italica v164   (Foxtail millet)  
Zea mays subsp. mays   (Corn)  
Zea mays v181   (Maize)  
Sorghum bicolor   (Broomcorn)  
Monocots/Others Musa balbisiana   (Starchy banana)  
Musa acuminata 22   (Pisang utan)  
Gymnosperms Pine family Pinus taeda   (Loblolly pine)  
Picea abies   (Norway spruce)  
Spikemosses Selaginella moellendorffii  
Mosses Physcomitrella patens  
Green algae Coccomyxa subellipsoidea sp. C-169 v2  
Asterochloris sp. Cgr/DA1pho v1.0  
Chlorella variabilis sp. NC64A  
Chlorella vulgaris  
Volvox carteri f. nagariensis  
Volvox carteri v199  
Chlamydomonas reinhardtii 4.0  
Ostreococcus sp. RCC809  
Ostreococcus lucimarinus CCE9901  
Ostreococcus tauri  
Bathycoccus prasinos  
Micromonas sp. RCC299  
Micromonas pusilla CCMP1545 v3.0  
Plants/Others Amborella trichopoda 22  
Choanoflagellates Codonosigidae Proterospongia sp. ATCC 50818  
Monosiga brevicollis  
Ichthyosporea Capsaspora Capsaspora owczarzaki ATCC 30864  
Ichthyosporea/Others Sphaeroforma arctica JP610  
Amoebozoa Dictyostelium Dictyostelium discoideum  
Dictyostelium purpureum  
Entamoeba Entamoeba dispar 1.2  
Entamoeba invadens 1.2  
Entamoeba histolytica 1  
Apusozoa Thecamonas Thecamonas trahens ATCC 50062  
Fungi Ascomycetes Saccharomycetes Hansenula polymorpha v2.0  
Dekkera bruxellensis CBS 2499 v2.0  
Pichia membranifaciensv1.0  
Candida tanzawaensis NRRL Y-17324 v1.0  
Candida dubliniensis CD36  
Candida tropicalis MYA-3404  
Candida parapsilosis  
Candida albicans SC5314  
Lodderomyces elongisporus NRRL YB-4239  
Babjeviella inositovora NRRL Y-12698 v1.0  
Pichia stipitis CBS 6054  
Candida guilliermondii ATCC 6260  
Hyphopichia burtonii NRRL Y-1933 v1.0  
Debaromyces hansenii  
Wickerhamomyces anomalus  
Pichia pastoris GS115  
Hanseniaspora valbyensis NRRL Y-1626 v1.1  
Yarrowia lipolytica CLIB122  
Candida lusitaniae ATCC 42720  
Metschnikowia bicuspidata NRRL YB-4993 v1.0  
Vanderwaltozyma polyspora DSM 70294  
Candida glabrata CBS138  
Kluyveromyces thermotolerans CBS 6340  
Lachancea kluyveri  
Kluyveromyces waltii  
Ashbya gossypii ATCC 10895  
Zygosaccharomyces rouxii  
Saccharomyces mikatae MIT  
Saccharomyces paradoxus MIT  
Saccharomyces cerevisiae 76   (Brewer's yeast)  
Saccharomyces bayanus MIT  
Kluyveromyces lactis  
Sordariomycetes Daldinia eschscholzii EC12 v1.0  
Apiospora montagnei NRRL 25634 v1.0  
Magnaporthe poae ATCC 64411 22  
Magnaporthe grisea 70-15  
Podospora anserina  
Sporotrichum thermophile ATCC 42464  
Thielavia terrestris NRRL 8126  
Chaetomium globosum CBS 148.51  
Neurospora tetrasperma  
Neurospora discreta FGSC 8579  
Neurospora crassa OR74A  
Cryphonectria parasitica   (Chestnut blight fungus)  
Verticillium albo-atrum VaMs.102  
Verticillium dahliae VdLs.17  
Acremonium alcalophilumv 1.0  
Glomerella graminicola 22  
Fusarium graminearum  
Nectria haematococca mpVI  
Fusarium oxysporum f. sp. lycopersici 4286  
Fusarium verticillioides 7600  
Trichoderma asperellum CBS 433.97 v1.0  
Trichoderma atroviride  
Trichoderma citrinoviride v1.0  
Trichoderma reesei 1.2  
Trichoderma virens Gv29-8  
Trichoderma longibrachiatum ATCC 18648 v1.0  
Trichoderma harzianum CBS 226.95 v1.0  
Leotiomycetes Amorphotheca resinae v1.0   (Kerosene fungus)  
Botrytis cinerea B05.10  
Sclerotinia sclerotiorum  
Blumeria graminis 22  
Eurotiomycetes Paracoccidioides brasiliensis Pb18  
Coccidioides posadasii RMSCC 3488  
Coccidioides immitis RS  
Ajellomyces dermatitidis SLH14081  
Histoplasma capsulatum class NAmI strain WU24  
Microsporum canis CBS 113480  
Trichophyton equinum CBS 127.97  
Trichophyton verrucosum HKI 0517  
Arthroderma benhamiae CBS 112371  
Trichophyton tonsurans CBS 112818  
Trichophyton rubrum CBS 118892  
Uncinocarpus reesii 1704  
Aspergillus zonatus v1.0  
Penicillium chrysogenum Wisconsin 54-1255  
Penicillium chrysogenum v1.0  
Aspergillus acidus v1.0  
Aspergillus fumigatus Af293  
Aspergillus brasiliensis v1.0  
Aspergillus nidulans FGSC A4  
Aspergillus sydowii v1.0  
Aspergillus versicolor v1.0  
Aspergillus glaucus  
Aspergillus carbonarius ITEM 5010  
Neosartorya fischeri NRRL 181  
Aspergillus terreus NIH2624  
Aspergillus tubingensis v1.0  
Aspergillus wentii v1.0  
Aspergillus oryzae RIB40  
Aspergillus niger 22  
Aspergillus niger ATCC 1015  
Aspergillus flavus NRRL3357  
Aspergillus clavatus NRRL 1  
Penicillium marneffei ATCC 18224  
Dothideomycetes Didymella exigua CBS 183.55 v1.0  
Leptosphaeria maculans 22  
Setosphaeria turcica v1.0  
Cochliobolus miyabeanus ATCC 44560 v1.0  
Cochliobolus victoriae FI3 v1.0  
Cochliobolus carbonum 26-R-13 v1.0  
Cochliobolus heterostrophus   (Southern corn leaf blight pathogen)  
Alternaria brassicicola  
Cochliobolus lunatus m118 v2.0  
Pyrenophora teres f. teres 22  
Pyrenophora tritici-repentis  
Stagonospora nodorum  
Mycosphaerella graminicola IPO323  
Zasmidium cellare ATCC 36951 v1.0  
Dothistroma septosporum  
Septoria musiva v1.0  
Mycosphaerella fijiensis CIRAD86  
Aureobasidium pullulans var. subglaciale EXF-2481 v1.0  
Pezizomycetes Tuber melanosporum Mel28 22  
Tuber melanosporum Vittad   (Black truffle)  
Schizosaccharomycetes Schizosaccharomyces cryophilus OY26 22  
Schizosaccharomyces octosporus yFS286  
Schizosaccharomyces japonicus yFS275  
Schizosaccharomyces pombe   (Fission yeast)  
Basidiomycetes Malassezia globosa CBS 7966  
Sporisorium reilianum 22  
Ustilago maydis  
Mixia osmundae IAM 14324 v1.0  
Cronartium quercuum f. sp. fusiforme G11 v1.0  
Puccinia graminis f. sp. tritici CRL 75-36-700-3  
Melampsora laricis-populina  
Rhodotorula graminis WP1 v1.0  
Sporobolomyces roseus IAM 13481  
Microbotryum violaceum 22  
Wallemia sebi v1.0  
Sphaerobolus stellatus v1.0  
Piloderma croceum F 1598 v1.0  
Serpula lacrymans var. lacrymans S7.9  
Coniophora puteana  
Hydnomerulius pinastri v2.0  
Paxillus rubicundulus Ve08.2h10 v1.0  
Pisolithus microcarpus 441 v1.0  
Pisolithus tinctorius Marx 270 v1.0  
Scleroderma citrinum Foug A v1.0  
Coprinopsis cinerea okayama7 130 v3  
Pleurotus ostreatus   (Shimeji)  
Amanita thiersii Skay4041 v1.0  
Amanita muscaria Koide v1.0   (Fly agaric)  
Galerina marginata v1.0  
Hebeloma cylindrosporum h7 v2.0  
Laccaria bicolor S238N-H82  
Agaricus bisporus var. bisporus  
Schizophyllum commune  
Stereum hirsutum FP-91666 SS1 v1.0  
Heterobasidion annosum  
Gloeophyllum trabeumv1.0  
Punctularia strigosozonata v1.0  
Sebacina vermifera MAFF 305830 v1.0  
Fomitiporia mediterranea v1.0  
Tulasnella calospora AL13/4D v1.0  
Postia placenta  
Wolfiporia cocos MD-104 SS10 v1.0  
Fomitopsis pinicolav1.0  
Fomitopsis pinicola FP-58527 SS1 v3.0  
Phanerochaete chrysosporium RP-78 2.1  
Dichomitus squalens  
Trametes versicolor v1.0  
Tremella mesenterica   (Witches' butter)  
Chytridiomycetes Spizellomyces punctatus DAOM BR117  
Fungi/Others Conidiobolus coronatus NRRL28638 v1.0  
Mortierella verticillata NRRL 6337  
Phycomyces blakesleeanus  
Rhizopus oryzae RA 99-880  
Mucor circinelloides  
Rhizomucor miehei CAU432  
Catenaria anguillulae PL171 v1.0  
Allomyces macrogynus ATCC 38327  
Protists Red algae Cyanidioschyzon merolae strain 10D 22  
Cyanidioschyzon merolae  
Porphyridium purpureum 02_2012  
Alveolates Apicomplexans Cryptosporidium hominis  
Cryptosporidium muris  
Cryptosporidium parvum Iowa II  
Neospora caninum  
Toxoplasma gondii VEG  
Toxoplasma gondii ME49  
Toxoplasma gondii GT1  
Babesia bovis T2Bo  
Theileria parva  
Theileria annulata  
Plasmodium falciparum 3D7  
Plasmodium vivax SaI-1 7.0  
Plasmodium knowlesi strain H  
Plasmodium yoelii ssp. yoelii 1  
Plasmodium chabaudi  
Plasmodium berghei ANKA  
Ciliates Paramecium tetraurelia  
Tetrahymena thermophila SB210 1  
Ichthyophthirius multifiliis strain G5  
Dinoflagellates Symbiodinium minutum clade B1 v1.2  
Alveolates/Others Perkinsus marinus ATCC 50983  
Euglenozoa Kinetoplasts Leishmania mexicana 2.4  
Leishmania major strain Friedlin  
Leishmania infantum JPCM5 2.4  
Leishmania braziliensis MHOM/BR/75/M2904 2.4  
Trypanosoma vivax  
Trypanosoma cruzi strain CL Brener  
Trypanosoma congolense 2.4  
Trypanosoma brucei gambiense v4.1  
Trypanosoma brucei TREU927 v4.1  
Diplomonads Giardia lamblia 2.3  
Cryptophyta Guillardia theta CCMP2712 v1.0  
Heterolobosea Naegleria gruberi  
Haptophyceae Emiliania huxleyi CCMP1516  
Parabasalids Trichomonas vaginalis  
stramenopiles Ectocarpus siliculosus  
Aureococcus anophagefferens  
Albugo laibachii 22  
Pythium iwayamai DAOM BR242034 22  
Pythium arrhenomanes ATCC 12531 22  
Pythium ultimum v1.7-2  
Pythium aphanidermatum DAOM BR444 22  
Pythium irregulare DAOM BR486 22  
Pythium vexans DAOM BR484 22  
Phytophthora ramorum 1.1   (Sudden oak death agent)  
Phytophthora sojae 1.1  
Phytophthora infestans T30-4  
Phytophthora capsici  
Hyaloperonospora arabidopsidis 22  
Phaeodactylum tricornutumCCAP 1055/1  
Fragilariopsis cylindrus  
Thalassiosira pseudonana CCMP1335  

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Prokaryotes
Category Organism
Bacteria Gammaproteobacteria Escherichia Escherichia fergusonii ATCC 35469  
Escherichia coli 'BL21-Gold(DE3)pLysS AG'  
Salmonella Salmonella bongori NCTC 12419  
Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594  
Yersinia Yersinia pseudotuberculosis IP 31758  
Yersinia pestis Pestoides F  
Yersinia enterocolitica subsp. enterocolitica 8081  
Shigella Shigella sonnei Ss046  
Shigella flexneri 5 str. 8401  
Shigella dysenteriae Sd197  
Shigella boydii CDC 3083-94  
Pectobacterium Pectobacterium wasabiae WPP163  
Pectobacterium sp. SCC3193  
Pectobacterium atrosepticum SCRI1043  
Pectobacterium carotovorum subsp. carotovorum PC1  
Erwinia Erwinia tasmaniensis Et1/99  
Erwinia sp. Ejp617  
Erwinia billingiae Eb661  
Erwinia pyrifoliae Ep1/96  
Erwinia amylovora ATCC 49946  
Photorhabdus Photorhabdus asymbiotica  
Photorhabdus luminescens subsp. laumondii TTO1  
Buchnera Buchnera aphidicola BCc  
Wigglesworthia Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis  
Sodalis Sodalis glossinidius str. 'morsitans'  
Enterobacter Enterobacter sp. R4-368  
Enterobacter sp. 638  
Enterobacter asburiae LF7a  
Enterobacter cloacae subsp. dissolvens SDM  
Cronobacter Cronobacter turicensis z3032  
Cronobacter sakazakii ES15  
Klebsiella Klebsiella oxytoca E718  
Klebsiella variicola At-22  
Klebsiella pneumoniae NTUH-K2044  
Enterobacter aerogenes KCTC 2190  
Citrobacter Citrobacter rodentium ICC168  
Citrobacter koseri ATCC BAA-895  
Serratia Serratia sp. AS12  
Serratia symbiotica str. 'Cinara cedri'  
Serratia sp. ATCC 39006  
Serratia plymuthica AS9  
Serratia proteamaculans 568  
Proteus Proteus mirabilis HI4320  
Edwardsiella Edwardsiella ictaluri 93-146  
Edwardsiella tarda EIB202  
Blochmannia Candidatus Blochmannia floridanus  
Hamiltonella Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)  
Dickeya Dickeya dadantii Ech703  
Dickeya zeae Ech1591  
Xenorhabdus Xenorhabdus bovienii SS-2004  
Xenorhabdus nematophila ATCC 19061  
Pantoea Halyomorpha halys symbiont  
Pantoea sp. At-9b  
Pantoea vagans C9-1  
Pantoea ananatis LMG 20103  
Riesia Candidatus Riesia pediculicola USDA  
Rahnella Rahnella sp. Y9602  
Rahnella aquatilis CIP 78.65 = ATCC 33071  
Haemophilus Haemophilus parasuis SH0165  
Haemophilus ducreyi 35000HP  
Haemophilus parainfluenzae T3T1  
Haemophilus influenzae PittEE  
Histophilus Haemophilus somnus 129PT  
Pasteurella Pasteurella multocida subsp. multocida str. 3480  
Actinobacillus Actinobacillus succinogenes 130Z  
Actinobacillus pleuropneumoniae serovar 5b str. L20  
Aggregatibacter Aggregatibacter aphrophilus NJ8700  
Aggregatibacter actinomycetemcomitans D7S-1  
Gallibacterium Gallibacterium anatis UMN179  
Xylella Xylella fastidiosa M23  
Xanthomonas Xanthomonas axonopodis pv. citri str. 306  
Xanthomonas albilineans GPE PC73  
Xanthomonas oryzae pv. oryzae PXO99A  
Xanthomonas campestris pv. campestris str. B100  
Stenotrophomonas Stenotrophomonas maltophilia K279a  
Pseudoxanthomonas Pseudoxanthomonas spadix BD-a59  
Pseudoxanthomonas suwonensis 11-1  
Vibrio Vibrio sp. Ex25  
Vibrio harveyi ATCC BAA-1116  
Vibrio parahaemolyticus RIMD 2210633  
Vibrio splendidus LGP32  
Vibrio anguillarum 775  
Vibrio furnissii NCTC 11218  
Vibrio vulnificus MO6-24/O  
Vibrio cholerae O395  
Aliivibrio Aliivibrio salmonicida LFI1238  
Vibrio fischeri MJ11  
Photobacterium Photobacterium profundum SS9  
Pseudomonas Pseudomonas sp. TKP  
Pseudomonas sp. UW4  
Pseudomonas brassicacearum subsp. brassicacearum NFM421  
Pseudomonas entomophila L48  
Pseudomonas syringae pv. tomato str. DC3000  
Pseudomonas stutzeri A1501  
Pseudomonas fulva 12-X  
Pseudomonas putida F1  
Pseudomonas protegens Pf-5  
Pseudomonas fluorescens SBW25  
Pseudomonas mendocina ymp  
Pseudomonas aeruginosa UCBPP-PA14  
Pseudomonas sp. VLB120  
Cellvibrio Cellvibrio japonicus Ueda107  
Azotobacter Azotobacter vinelandii DJ  
Psychrobacter Psychrobacter sp. G  
Psychrobacter sp. PRwf-1  
Psychrobacter arcticus 273-4  
Psychrobacter cryohalolentis K5  
Acinetobacter Acinetobacter oleivorans DR1  
Acinetobacter calcoaceticus PHEA-2  
Acinetobacter baumannii ATCC 17978  
Acinetobacter sp. ADP1  
Moraxella Moraxella catarrhalis RH4  
Shewanella Shewanella piezotolerans WP3  
Shewanella loihica PV-4  
Shewanella halifaxensis HAW-EB4  
Shewanella sediminis HAW-EB3  
Shewanella denitrificans OS217  
Shewanella pealeana ATCC 700345  
Shewanella oneidensis MR-1  
Shewanella baltica OS185  
Shewanella woodyi ATCC 51908  
Shewanella sp. MR-4  
Shewanella amazonensis SB2B  
Shewanella violacea DSS12  
Shewanella frigidimarina NCIMB 400  
Shewanella putrefaciens CN-32  
Idiomarina Idiomarina loihiensis L2TR  
Colwellia Colwellia psychrerythraea 34H  
Pseudoalteromonas Pseudoalteromonas sp. SM9913  
Pseudoalteromonas atlantica T6c  
Pseudoalteromonas haloplanktis TAC125  
Saccharophagus Saccharophagus degradans 2-40  
Marinobacter Marinobacter adhaerens HP15  
Marinobacter sp. BSs20148  
Marinobacter hydrocarbonoclasticus ATCC 49840  
Marinobacter aquaeolei VT8  
Alteromonas Alteromonas sp. SN2  
Alteromonas macleodii str. 'Deep ecotype'  
Glaciecola Glaciecola sp. 4H-3-7+YE-5  
Glaciecola nitratireducens FR1064  
Psychromonas Psychromonas ingrahamii 37  
Psychromonas sp. CNPT3  
Teredinibacter Teredinibacter turnerae T7901  
Ferrimonas Ferrimonas balearica DSM 9799  
Coxiella Coxiella burnetii Dugway 5J108-111  
Legionella Legionella longbeachae NSW150  
Legionella pneumophila str. Corby  
Methylococcus Methylococcus capsulatus str. Bath  
Methylomonas Methylomonas methanica MC09  
Francisella Francisella noatunensis subsp. orientalis str. Toba 04  
Francisella sp. TX077308  
Francisella philomiragia subsp. philomiragia ATCC 25017  
Francisella tularensis subsp. tularensis WY96-3418  
Francisella cf. novicida 3523  
Francisella novicida U112  
Thiomicrospira Thioalkalimicrobium cyclicum ALM1  
Nitrosococcus Nitrosococcus watsonii C-113  
Nitrosococcus halophilus Nc4  
Nitrosococcus oceani ATCC 19707  
Allochromatium Allochromatium vinosum DSM 180  
Alkalilimnicola Alkalilimnicola ehrlichii MLHE-1  
Halorhodospira Halorhodospira halophila SL1  
Thioalkalivibrio Thioalkalivibrio sulfidophilus HL-EbGr7  
Thioalkalivibrio sp. K90mix  
Halothiobacillus Halothiobacillus neapolitanus c2  
Hahella Hahella chejuensis KCTC 2396  
Chromohalobacter Chromohalobacter salexigens DSM 3043  
Halomonas Halomonas elongata DSM 2581  
Alcanivorax Alcanivorax borkumensis SK2  
Kangiella Kangiella koreensis DSM 16069  
Marinomonas Marinomonas posidonica IVIA-Po-181  
Marinomonas sp. MWYL1  
Marinomonas mediterranea MMB-1  
Aeromonas Aeromonas veronii B565  
Aeromonas salmonicida subsp. salmonicida A449  
Aeromonas hydrophila subsp. hydrophila ATCC 7966  
Tolumonas Tolumonas auensis DSM 9187  
Dichelobacter Dichelobacter nodosus VCS1703A  
Acidithiobacillus Acidithiobacillus ferrivorans SS3  
Acidithiobacillus caldus SM-1  
Acidithiobacillus ferrooxidans ATCC 53993  
Ruthia Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)  
Unclassified Gammaproteobacter Baumannia cicadellinicola str. Hc (Homalodisca coagulata)  
gamma proteobacterium HdN1  
Candidatus Vesicomyosocius okutanii HA  
Gammaproteobacteria/Others Oceanimonas sp. GK1  
Candidatus Carsonella ruddii PV  
Methylomicrobium alcaliphilum  
Rhodanobacter denitrificans  
Frateuria aurantia DSM 6220  
Spiribacter sp. UAH-SP71  
Thiocystis violascens DSM 198  
Providencia stuartii MRSN 2154  
Escherichia blattae DSM 4481  
Candidatus Moranella endobia PCIT  
secondary endosymbiont of Ctenarytaina eucalypti  
Enterobacteriaceae bacterium strain FGI 57  
Methylophaga sp. JAM1  
Cycloclasticus sp. P1  
Thiomicrospira crunogena XCL-2  
Betaproteobacteria Neisseria Neisseria meningitidis alpha14  
Neisseria meningitidis FAM18  
Neisseria lactamica 020-06  
Neisseria gonorrhoeae NCCP11945  
Chromobacterium Chromobacterium violaceum ATCC 12472  
Laribacter Laribacter hongkongensis HLHK9  
Ralstonia Ralstonia pickettii 12D  
Ralstonia solanacearum CFBP2957  
Ralstonia solanacearum  
Cupriavidus Ralstonia eutropha JMP134  
Cupriavidus taiwanensis LMG 19424  
Cupriavidus metallidurans CH34  
Cupriavidus necator N-1  
Ralstonia eutropha H16  
Burkholderia Burkholderia sp. RPE64  
Burkholderia sp. CCGE1002  
Burkholderia thailandensis E264  
Burkholderia pseudomallei 1106a  
Burkholderia mallei SAVP1  
Burkholderia ambifaria AMMD  
Burkholderia cenocepacia HI2424  
Burkholderia multivorans ATCC 17616  
Burkholderia vietnamiensis G4  
Burkholderia gladioli BSR3  
Burkholderia glumae BGR1  
Polynucleobacter Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  
Bordetella Bordetella petrii DSM 12804  
Bordetella avium 197N  
Bordetella pertussis Tohama I  
Bordetella parapertussis 12822  
Bordetella bronchiseptica RB50  
Achromobacter Achromobacter xylosoxidans A8  
Achromobacter xylosoxidans  
Taylorella Taylorella asinigenitalis MCE3  
Taylorella equigenitalis MCE9  
Pusillimonas Pusillimonas sp. T7-7  
Rhodoferax Rhodoferax ferrireducens T118  
Polaromonas Polaromonas sp. JS666  
Polaromonas naphthalenivorans CJ2  
Acidovorax Acidovorax ebreus TPSY  
Acidovorax sp. KKS102  
Acidovorax sp. JS42  
Acidovorax citrulli AAC00-1  
Acidovorax avenae subsp. avenae ATCC 19860  
Verminephrobacter Verminephrobacter eiseniae EF01-2  
Delftia Delftia sp. Cs1-4  
Delftia acidovorans SPH-1  
Variovorax Variovorax paradoxus S110  
Comamonas Comamonas testosteroni CNB-2  
Alicycliphilus Alicycliphilus denitrificans K601  
Methylibium Methylibium petroleiphilum PM1  
Herminiimonas Herminiimonas arsenicoxydans  
Herbaspirillum Herbaspirillum seropedicae SmR1  
Zinderia Candidatus Zinderia insecticola CARI  
Leptothrix Leptothrix cholodnii SP-6  
Thiomonas Thiomonas arsenitoxydans  
Thiomonas intermedia K12  
Nitrosomonas Nitrosomonas sp. Is79A3  
Nitrosomonas eutropha C91  
Nitrosomonas europaea ATCC 19718  
Nitrosospira Nitrosospira multiformis ATCC 25196  
Aromatoleum Aromatoleum aromaticum EbN1  
Azoarcus Azoarcus sp. KH32C  
Azoarcus sp. BH72  
Dechloromonas Dechloromonas aromatica RCB  
Thauera Thauera sp. MZ1T  
Thiobacillus Thiobacillus denitrificans ATCC 25259  
Methylobacillus Methylobacillus flagellatus KT  
Methylotenera Methylotenera versatilis 301  
Methylotenera mobilis JLW8  
Methylovorus Methylovorus sp. MP688  
Methylovorus glucosetrophus SIP3-4  
Accumulibacter Candidatus Accumulibacter phosphatis clade IIA str. UW-1  
Sideroxydans Sideroxydans lithotrophicus ES-1  
Gallionella Gallionella capsiferriformans ES-2  
Betaproteobacteria/Others Dechlorosoma suillum PS  
Pseudogulbenkiania sp. NH8B  
syncytium symbiont of Diaphorina citri  
Candidatus Tremblaya princeps PCIT  
beta proteobacterium CB  
Rubrivivax gelatinosus IL144  
Burkholderia rhizoxinica HKI 454  
Burkholderia phytofirmans PsJN  
Burkholderia phymatum STM815  
Burkholderia xenovorans LB400  
Ramlibacter tataouinensis TTB310  
Collimonas fungivorans Ter331  
Janthinobacterium sp. Marseille  
Advenella kashmirensis WT001  
Epsilonproteobacteria Helicobacter Helicobacter cetorum MIT 00-7128  
Helicobacter bizzozeronii CIII-1  
Helicobacter hepaticus ATCC 51449  
Helicobacter mustelae 12198  
Helicobacter felis ATCC 49179  
Helicobacter cinaedi PAGU611  
Helicobacter acinonychis str. Sheeba  
Helicobacter pylori B38  
Wolinella Wolinella succinogenes DSM 1740  
Sulfurimonas Sulfurimonas autotrophica DSM 16294  
Sulfurimonas denitrificans DSM 1251  
Sulfuricurvum uncultured Sulfuricurvum sp. RIFRC-1  
Sulfuricurvum kujiense DSM 16994  
Campylobacter Campylobacter hominis ATCC BAA-381  
Campylobacter lari RM2100  
Campylobacter curvus 525.92  
Campylobacter concisus 13826  
Campylobacter jejuni subsp. doylei 269.97  
Campylobacter sp. 03-427  
Campylobacter fetus subsp. fetus 82-40  
Arcobacter Arcobacter sp. L  
Arcobacter nitrofigilis DSM 7299  
Arcobacter butzleri RM4018  
Sulfurospirillum Sulfurospirillum deleyianum DSM 6946  
Sulfurospirillum barnesii SES-3  
Nitratiruptor Nitratiruptor sp. SB155-2  
Sulfurovum Sulfurovum sp. NBC37-1  
Nitratifractor Nitratifractor salsuginis DSM 16511  
Nautilia Nautilia profundicola AmH  
Deltaproteobacteria Geobacter Geobacter daltonii FRC-32  
Geobacter sp. M21  
Geobacter uraniireducens Rf4  
Geobacter lovleyi SZ  
Geobacter bemidjiensis Bem  
Geobacter sulfurreducens KN400  
Geobacter metallireducens GS-15  
Pelobacter Pelobacter propionicus DSM 2379  
Pelobacter carbinolicus DSM 2380  
Desulfovibrio Desulfovibrio magneticus RS-1  
Desulfovibrio alaskensis G20  
Desulfovibrio vulgaris subsp. vulgaris DP4  
Desulfovibrio salexigens DSM 2638  
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  
Desulfovibrio africanus str. Walvis Bay  
Lawsonia Lawsonia intracellularis PHE/MN1-00  
Desulfomicrobium Desulfomicrobium baculatum DSM 4028  
Desulfohalobium Desulfohalobium retbaense DSM 5692  
Bdellovibrio Bdellovibrio bacteriovorus HD100  
Desulfotalea Desulfotalea psychrophila LSv54  
Desulfurivibrio Desulfurivibrio alkaliphilus AHT2  
Desulfobulbus Desulfobulbus propionicus DSM 2032  
Desulfococcus Desulfococcus oleovorans Hxd3  
Desulfatibacillum Desulfatibacillum alkenivorans AK-01  
Desulfobacterium Desulfobacterium autotrophicum HRM2  
Anaeromyxobacter Anaeromyxobacter sp. Fw109-5  
Anaeromyxobacter dehalogenans 2CP-1  
Myxococcus Myxococcus xanthus DK 1622  
Myxococcus fulvus HW-1  
Stigmatella Stigmatella aurantiaca DW4/3-1  
Sorangium Sorangium cellulosum 'So ce 56'  
Haliangium Haliangium ochraceum DSM 14365  
Syntrophus Syntrophus aciditrophicus SB  
Desulfobacca Desulfobacca acetoxidans DSM 11109  
Syntrophobacter Syntrophobacter fumaroxidans MPOB  
Desulfarculus Desulfarculus baarsii DSM 2075  
Hippea Hippea maritima DSM 10411  
Deltaproteobacteria/Others Desulfomonile tiedjei DSM 6799  
Desulfovibrio piezophilus  
Desulfovibrio aespoeensis Aspo-2  
Babela massiliensis  
Corallococcus coralloides DSM 2259  
Alphaproteobacteria Rickettsia Rickettsia bellii OSU 85-389  
Rickettsia canadensis str. McKiel  
Rickettsia typhi str. Wilmington  
Rickettsia prowazekii str. BuV67-CWPP  
Rickettsia philipii str. 364D  
Rickettsia heilongjiangensis 054  
Rickettsia peacockii str. Rustic  
Rickettsia felis URRWXCal2  
Rickettsia slovaca 13-B  
Rickettsia parkeri str. Portsmouth  
Rickettsia massiliae MTU5  
Rickettsia japonica YH  
Rickettsia africae ESF-5  
Rickettsia rhipicephali str. 3-7-female6-CWPP  
Rickettsia montanensis str. OSU 85-930  
Candidatus Rickettsia amblyommii str. GAT-30V  
Rickettsia australis str. Cutlack  
Rickettsia akari str. Hartford  
Rickettsia rickettsii str. 'Sheila Smith'  
Rickettsia conorii str. Malish 7  
Orientia Orientia tsutsugamushi str. Boryong  
Wolbachia Wolbachia endosymbiont of Culex quinquefasciatus Pel  
Wolbachia sp. wRi  
Anaplasma Anaplasma phagocytophilum HZ  
Anaplasma marginale str. Florida  
Anaplasma centrale str. Israel  
Ehrlichia Ehrlichia chaffeensis str. Arkansas  
Ehrlichia canis str. Jake  
Ehrlichia ruminantium str. Gardel  
Neorickettsia Neorickettsia sennetsu str. Miyayama  
Neorickettsia risticii str. Illinois  
Pelagibacter Candidatus Pelagibacter sp. IMCC9063  
Mesorhizobium Mesorhizobium opportunistum WSM2075  
Mesorhizobium ciceri biovar biserrulae WSM1271  
Mesorhizobium loti MAFF303099  
Chelativorans Mesorhizobium sp. BNC1  
Parvibaculum Parvibaculum lavamentivorans DS-1  
Sinorhizobium Sinorhizobium fredii NGR234  
Sinorhizobium medicae WSM419  
Sinorhizobium meliloti AK83  
Agrobacterium Agrobacterium tumefaciens str. C58  
Agrobacterium radiobacter K84  
Agrobacterium sp. H13-3  
Agrobacterium vitis S4  
Rhizobium Genome sequence of Rhizobium sp. strain IRBG74  
Rhizobium etli CIAT 652  
Rhizobium leguminosarum bv. viciae 3841  
Liberibacter Candidatus Liberibacter asiaticus str. psy62  
Brucella Brucella microti CCM 4915  
Brucella pinnipedialis B2/94  
Brucella canis ATCC 23365  
Brucella suis ATCC 23445  
Brucella melitensis ATCC 23457  
Brucella ovis ATCC 25840  
Brucella abortus S19  
Ochrobactrum Ochrobactrum anthropi ATCC 49188  
Bradyrhizobium Bradyrhizobium japonicum USDA 110  
Bradyrhizobium sp. ORS 278  
Rhodopseudomonas Rhodopseudomonas palustris BisA53  
Nitrobacter Nitrobacter winogradskyi Nb-255  
Nitrobacter hamburgensis X14  
Oligotropha Oligotropha carboxidovorans OM4  
Bartonella Bartonella tribocorum CIP 105476  
Bartonella clarridgeiae 73  
Bartonella henselae str. Houston-1  
Bartonella grahamii as4aup  
Bartonella quintana str. Toulouse  
Bartonella bacilliformis KC583  
Xanthobacter Xanthobacter autotrophicus Py2  
Azorhizobium Azorhizobium caulinodans ORS 571  
Starkeya Starkeya novella DSM 506  
Methylobacterium Methylobacterium chloromethanicum CM4  
Methylobacterium extorquens AM1  
Methylobacterium sp. 4-46  
Methylobacterium populi BJ001  
Methylobacterium nodulans ORS 2060  
Methylobacterium radiotolerans JCM 2831  
Beijerinckia Beijerinckia indica subsp. indica ATCC 9039  
Methylocella Methylocella silvestris BL2  
Hyphomicrobium Hyphomicrobium sp. MC1  
Hyphomicrobium denitrificans ATCC 51888  
Rhodomicrobium Rhodomicrobium vannielii ATCC 17100  
Hodgkinia Candidatus Hodgkinia cicadicola Dsem  
Caulobacter Caulobacter sp. K31  
Caulobacter crescentus NA1000  
Caulobacter segnis ATCC 21756  
Phenylobacterium Phenylobacterium zucineum HLK1  
Brevundimonas Brevundimonas subvibrioides ATCC 15264  
Asticcacaulis Asticcacaulis excentricus CB 48  
Ruegeria Ruegeria sp. TM1040  
Ruegeria pomeroyi DSS-3  
Rhodobacter Rhodobacter sphaeroides ATCC 17029  
Rhodobacter capsulatus SB 1003  
Jannaschia Jannaschia sp. CCS1  
Roseobacter Roseobacter litoralis Och 149  
Roseobacter denitrificans OCh 114  
Paracoccus Paracoccus denitrificans PD1222  
Dinoroseobacter Dinoroseobacter shibae DFL 12  
Ketogulonicigenium Ketogulonicigenium vulgare Y25  
Ketogulonigenium vulgarum WSH-001  
Maricaulis Maricaulis maris MCS10  
Hyphomonas Hyphomonas neptunium ATCC 15444  
Hirschia Hirschia baltica ATCC 49814  
Zymomonas Zymomonas mobilis subsp. mobilis NCIMB 11163  
Novosphingobium Novosphingobium sp. PP1Y  
Novosphingobium aromaticivorans DSM 12444  
Sphingopyxis Sphingopyxis alaskensis RB2256  
Sphingomonas Sphingomonas sp. MM-1  
Sphingomonas wittichii RW1  
Sphingobium Sphingobium sp. SYK-6  
Sphingobium japonicum UT26S  
Sphingobium chlorophenolicum L-1  
Erythrobacter Erythrobacter litoralis HTCC2594  
Gluconobacter Gluconobacter oxydans 621H  
Granulobacter Granulibacter bethesdensis CGDNIH1  
Acidiphilium Acidiphilium multivorum AIU301  
Acidiphilium cryptum JF-5  
Gluconacetobacter Gluconacetobacter diazotrophicus PAl 5  
Acetobacter Acetobacter pasteurianus IFO 3283-01  
Rhodospirillum Rhodospirillum centenum SW  
Rhodospirillum rubrum F11  
Magnetospirillum Magnetospirillum magneticum AMB-1  
Azospirillum Azospirillum lipoferum 4B  
Azospirillum sp. B510  
Azospirillum brasilense Sp245  
Parvularcula Parvularcula bermudensis HTCC2503  
Unclassified Alphaproteobacter Polymorphum gilvum SL003B-26A1  
Micavibrio aeruginosavorus ARL-13  
Candidatus Puniceispirillum marinum IMCC1322  
Alphaproteobacteria/Others Magnetococcus marinus MC-1  
Phaeobacter gallaeciensis 2.10  
Pseudovibrio sp. FO-BEG1  
Rhodospirillum photometricum DSM 122  
Tistrella mobilis KA081020-065  
Gluconacetobacter xylinus NBRC 3288  
alpha proteobacterium HIMB5  
alpha proteobacterium HIMB59  
Candidatus Midichloria mitochondrii IricVA  
Pelagibacterium halotolerans B2  
Methylocystis sp. SC2  
Chrysiogenetes Desulfurispirillum Desulfurispirillum indicum S5  
Firmicutes Bacillus Bacillus sp. JS  
Bacillus sp. 1NLA3E  
Bacillus amyloliquefaciens FZB42  
Bacillus atrophaeus 1942  
Bacillus subtilis subsp. subtilis str. 168  
Bacillus licheniformis DSM 13 = ATCC 14580  
Bacillus halodurans C-125  
Bacillus weihenstephanensis KBAB4  
Bacillus thuringiensis str. Al Hakam  
Bacillus cereus 03BB102  
Bacillus anthracis str. A0248  
Bacillus pseudofirmus OF4  
Bacillus clausii KSM-K16  
Bacillus cellulosilyticus DSM 2522  
Bacillus pumilus SAFR-032  
Bacillus megaterium DSM 319  
Bacillus coagulans 2-6  
Oceanobacillus Oceanobacillus iheyensis HTE831  
Geobacillus Geobacillus thermoleovorans CCB_US3_UF5  
Geobacillus kaustophilus HTA426  
Geobacillus sp. GHH01  
Geobacillus sp. WCH70  
Geobacillus thermodenitrificans NG80-2  
Anoxybacillus Anoxybacillus flavithermus WK1  
Staphylococcus Staphylococcus pseudintermedius HKU10-03  
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305  
Staphylococcus lugdunensis HKU09-01  
Staphylococcus haemolyticus JCSC1435  
Staphylococcus epidermidis RP62A  
Staphylococcus carnosus subsp. carnosus TM300  
Staphylococcus aureus subsp. aureus JH1  
Staphylococcus aureus  
Listeria Listeria welshimeri serovar 6b str. SLCC5334  
Listeria innocua Clip11262  
Listeria seeligeri serovar 1/2b str. SLCC3954  
Listeria monocytogenes serotype 4b str. CLIP 80459  
Listeria ivanovii subsp. ivanovii PAM 55  
Lysinibacillus Lysinibacillus sphaericus C3-41  
Exiguobacterium Exiguobacterium sp. MH3  
Exiguobacterium sp. AT1b  
Exiguobacterium sibiricum 255-15  
Macrococcus Macrococcus caseolyticus JCSC5402  
Brevibacillus Brevibacillus brevis NBRC 100599  
Paenibacillus Paenibacillus sp. JDR-2  
Paenibacillus terrae HPL-003  
Paenibacillus mucilaginosus 3016  
Paenibacillus polymyxa M1  
Alicyclobacillus Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  
Lactococcus Lactococcus garvieae ATCC 49156  
Lactococcus lactis subsp. cremoris MG1363  
Streptococcus Streptococcus sp. I-P16  
Streptococcus sp. I-G2  
Streptococcus intermedius JTH08  
Streptococcus gallolyticus UCN34  
Streptococcus pseudopneumoniae IS7493  
Streptococcus pasteurianus ATCC 43144  
Streptococcus equi subsp. equi 4047  
Streptococcus dysgalactiae subsp. equisimilis GGS_124  
Streptococcus infantarius subsp. infantarius CJ18  
Streptococcus macedonicus ACA-DC 198  
Streptococcus mitis B6  
Streptococcus uberis 0140J  
Streptococcus parauberis KCTC 11537  
Streptococcus parasanguinis ATCC 15912  
Streptococcus pyogenes str. Manfredo  
Streptococcus pneumoniae P1031  
Streptococcus agalactiae A909  
Streptococcus mutans NN2025  
Streptococcus thermophilus LMD-9  
Streptococcus suis P1/7  
Streptococcus sanguinis SK36  
Streptococcus salivarius 57.I  
Streptococcus oralis Uo5  
Streptococcus gordonii str. Challis substr. CH1  
Lactobacillus Lactobacillus casei ATCC 334  
Lactobacillus kefiranofaciens ZW3  
Lactobacillus crispatus ST1  
Lactobacillus rhamnosus Lc 705  
Lactobacillus johnsonii FI9785  
Lactobacillus sanfranciscensis TMW 1.1304  
Lactobacillus salivarius CECT 5713  
Lactobacillus ruminis ATCC 27782  
Lactobacillus fermentum IFO 3956  
Lactobacillus amylovorus GRL1118  
Lactobacillus sakei subsp. sakei 23K  
Lactobacillus reuteri DSM 20016  
Lactobacillus gasseri ATCC 33323  
Lactobacillus plantarum JDM1  
Lactobacillus helveticus DPC 4571  
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365  
Lactobacillus buchneri NRRL B-30929  
Lactobacillus buchneri  
Lactobacillus brevis ATCC 367  
Lactobacillus acidophilus 30SC  
Pediococcus Pediococcus claussenii ATCC BAA-344  
Pediococcus pentosaceus ATCC 25745  
Enterococcus Enterococcus sp. 7L76  
Enterococcus hirae ATCC 9790  
Enterococcus faecium Aus0004  
Enterococcus faecalis 62  
Melissococcus Melissococcus plutonius DAT561  
Oenococcus Oenococcus oeni PSU-1  
Leuconostoc Leuconostoc sp. C2  
Leuconostoc kimchii IMSNU 11154  
Leuconostoc citreum KM20  
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  
Leuconostoc gasicomitatum LMG 18811  
Aerococcus Aerococcus urinae ACS-120-V-Col10a  
Carnobacterium Carnobacterium sp. 17-4  
Carnobacterium sp. WN1359  
Clostridium Clostridium sp. BNL1100  
Clostridium novyi NT  
Clostridium ljungdahlii DSM 13528  
Clostridium kluyveri DSM 555  
Clostridium beijerinckii NCIMB 8052  
Clostridium tetani E88  
Clostridium perfringens ATCC 13124  
Clostridium cellulovorans 743B  
Clostridium botulinum A str. ATCC 3502  
Clostridium acetobutylicum ATCC 824  
Alkaliphilus Alkaliphilus oremlandii OhILAs  
Alkaliphilus metalliredigens QYMF  
Symbiobacterium Symbiobacterium thermophilum IAM 14863  
Syntrophomonas Syntrophomonas wolfei subsp. wolfei str. Goettingen  
Syntrophothermus Syntrophothermus lipocalidus DSM 12680  
Veillonella Veillonella parvula DSM 2008  
Selenomonas Selenomonas sputigena ATCC 35185  
Selenomonas ruminantium subsp. lactilytica TAM6421  
Acidaminococcus Acidaminococcus intestini RyC-MR95  
Acidaminococcus fermentans DSM 20731  
Desulfitobacterium Desulfitobacterium hafniense Y51  
Desulfitobacterium dehalogenans ATCC 51507  
Desulfotomaculum Desulfotomaculum reducens MI-1  
Desulfotomaculum acetoxidans DSM 771  
Desulfotomaculum kuznetsovii DSM 6115  
Desulfotomaculum carboxydivorans CO-1-SRB  
Desulfotomaculum ruminis DSM 2154  
Pelotomaculum Pelotomaculum thermopropionicum SI  
Desulforudis Candidatus Desulforudis audaxviator MP104C  
Thermincola Thermincola potens JR  
Syntrophobotulus Syntrophobotulus glycolicus DSM 8271  
Heliobacterium Heliobacterium modesticaldum Ice1  
Finegoldia Finegoldia magna ATCC 29328  
Anaerococcus Anaerococcus prevotii DSM 20548  
Eubacterium Eubacterium eligens ATCC 27750  
Eubacterium limosum KIST612  
Butyrivibrio Butyrivibrio proteoclasticus B316  
Butyrivibrio fibrisolvens  
Cellulosilyticum Clostridium lentocellum DSM 5427  
Ethanoligenens Ethanoligenens harbinense YUAN-3  
Ruminococcus Ruminococcus sp.  
Ruminococcus bromii  
Ruminococcus albus 7  
Thermaerobacter Thermaerobacter marianensis DSM 12885  
Unclassified Clostridiales butyrate-producing bacterium SS3/4  
butyrate-producing bacterium SM4/1  
Thermoanaerobacter Thermoanaerobacter mathranii subsp. mathranii str. A3  
Thermoanaerobacter pseudethanolicus ATCC 33223  
Thermoanaerobacter sp. X514  
Thermoanaerobacter italicus Ab9  
Thermoanaerobacter wiegelii Rt8.B1  
Thermoanaerobacter brockii subsp. finnii Ako-1  
Carboxydothermus Carboxydothermus hydrogenoformans Z-2901  
Tepidanaerobacter Tepidanaerobacter acetatoxydans Re1  
Moorella Moorella thermoacetica ATCC 39073  
Ammonifex Ammonifex degensii KC4  
Caldicellulosiruptor Caldicellulosiruptor obsidiansis OB47  
Caldicellulosiruptor kronotskyensis 2002  
Caldicellulosiruptor hydrothermalis 108  
Caldicellulosiruptor owensensis OL  
Caldicellulosiruptor lactoaceticus 6A  
Caldicellulosiruptor kristjanssonii 177R1B  
Caldicellulosiruptor saccharolyticus DSM 8903  
Caldicellulosiruptor bescii DSM 6725  
Thermosediminibacter Thermosediminibacter oceani DSM 16646  
Thermoanaerobacterium Thermoanaerobacterium xylanolyticum LX-11  
Thermoanaerobacterium thermosaccharolyticum DSM 571  
Coprothermobacter Coprothermobacter proteolyticus DSM 5265  
Thermodesulfobium Thermodesulfobium narugense DSM 14796  
Mahella Mahella australiensis 50-1 BON  
Natranaerobius Natranaerobius thermophilus JW/NM-WN-LF  
Halothermothrix Halothermothrix orenii H 168  
Halanaerobium Halanaerobium hydrogeniformans  
Halanaerobium praevalens DSM 2228  
Acetohalobium Acetohalobium arabaticum DSM 5501  
Firmicutes/Others Megasphaera elsdenii DSM 20460  
Megamonas hypermegale  
Erysipelothrix rhusiopathiae str. Fujisawa  
Clostridiales genomosp. BVAB3 str. UPII9-5  
Clostridium clariflavum DSM 19732  
Eubacterium siraeum  
Clostridium cellulolyticum H10  
Clostridium thermocellum ATCC 27405  
Faecalibacterium prausnitzii  
Sulfobacillus acidophilus DSM 10332  
Oscillibacter valericigenes Sjm18-20  
Desulfosporosinus acidiphilus SJ4  
Desulfosporosinus orientis DSM 765  
Dehalobacter sp. DCA  
Dehalobacter sp. CF  
Acetobacterium woodii DSM 1030  
Clostridium difficile 630  
Clostridium sticklandii DSM 519  
Filifactor alocis ATCC 35896  
Clostridium saccharolyticum WM1  
Clostridium phytofermentans ISDg  
[Ruminococcus] obeum  
[Ruminococcus] torques  
Eubacterium rectale M104/1  
Eubacterium rectale ATCC 33656  
Coprococcus sp. ART55/1  
Roseburia hominis A2-183  
Roseburia intestinalis  
Candidatus Arthromitus sp. SFB-mouse-Japan  
Thermoanaerobacter tengcongensis MB4  
Tetragenococcus halophilus NBRC 12172  
Weissella koreensis KACC 15510  
Kyrpidia tusciae DSM 2912  
Bacillus selenitireducens MLS10  
Solibacillus silvestris StLB046  
Geobacillus thermoglucosidasius C56-YS93  
Halobacillus halophilus DSM 2266  
Tenericutes Mycoplasma Mycoplasma leachii 99/014/6  
Mycoplasma mycoides subsp. capri LC str. 95010  
Mycoplasma capricolum subsp. capricolum ATCC 27343  
Mycoplasma haemocanis str. Illinois  
Mycoplasma wenyonii str. Massachusetts  
Mycoplasma suis KI3806  
Mycoplasma crocodyli MP145  
Mycoplasma conjunctivae HRC/581  
Mycoplasma haemofelis Ohio2  
Mycoplasma bovis HB0801  
Mycoplasma penetrans HF-2  
Mycoplasma putrefaciens KS1  
Mycoplasma mobile 163K  
Mycoplasma fermentans M64  
Mycoplasma arthritidis 158L3-1  
Mycoplasma agalactiae PG2  
Mycoplasma synoviae 53  
Mycoplasma pulmonis UAB CTIP  
Mycoplasma pneumoniae 309  
Mycoplasma hyorhinis GDL-1  
Mycoplasma hyopneumoniae 168  
Mycoplasma hominis ATCC 23114  
Mycoplasma genitalium G37  
Mycoplasma gallisepticum str. F  
Ureaplasma Ureaplasma parvum serovar 3 str. ATCC 27815  
Ureaplasma urealyticum serovar 10 str. ATCC 33699  
Phytoplasma Candidatus Phytoplasma mali  
Aster yellows witches'-broom phytoplasma AYWB  
Onion yellows phytoplasma OY-M  
Acholeplasma Acholeplasma laidlawii PG-8A  
Mesoplasma Mesoplasma florum L1  
Actinobacteria Mycobacterium Mycobacterium massiliense str. GO 06  
Mycobacterium abscessus ATCC 19977  
Mycobacterium sp. JLS  
Mycobacterium intracellulare ATCC 13950  
Mycobacterium avium 104  
Mycobacterium vanbaalenii PYR-1  
Mycobacterium canettii CIPT 140010059  
Mycobacterium africanum GM041182  
Mycobacterium tuberculosis KZN 1435  
Mycobacterium tuberculosis  
Mycobacterium bovis BCG str. Pasteur 1173P2  
Mycobacterium rhodesiae NBB3  
Mycobacterium ulcerans Agy99  
Mycobacterium gilvum PYR-GCK  
Mycobacterium chubuense NBB4  
Mycobacterium marinum M  
Mycobacterium smegmatis str. MC2 155  
Mycobacterium leprae Br4923  
Amycolicicoccus Amycolicicoccus subflavus DQS3-9A1  
Corynebacterium Corynebacterium resistens DSM 45100  
Corynebacterium aurimucosum ATCC 700975  
Corynebacterium kroppenstedtii DSM 44385  
Corynebacterium efficiens YS-314  
Corynebacterium ulcerans 0102  
Corynebacterium urealyticum DSM 7109  
Corynebacterium jeikeium K411  
Corynebacterium variabile DSM 44702  
Corynebacterium pseudotuberculosis 316  
Corynebacterium glutamicum R  
Corynebacterium diphtheriae NCTC 13129  
Nocardia Nocardia cyriacigeorgica GUH-2  
Nocardia farcinica IFM 10152  
Rhodococcus Rhodococcus jostii RHA1  
Rhodococcus equi 103S  
Rhodococcus opacus B4  
Rhodococcus erythropolis PR4  
Gordonia Gordonia sp. KTR9  
Gordonia polyisoprenivorans VH2  
Gordonia bronchialis DSM 43247  
Tsukamurella Tsukamurella paurometabola DSM 20162  
Segniliparus Segniliparus rotundus DSM 44985  
Streptomyces Streptomyces coelicolor A3(2)  
Streptomyces sp. PAMC26508  
Streptomyces flavogriseus ATCC 33331  
Streptomyces sp. SirexAA-E  
Streptomyces griseus subsp. griseus NBRC 13350  
Streptomyces bingchenggensis BCW-1  
Streptomyces violaceusniger Tu 4113  
Streptomyces avermitilis MA-4680  
Streptomyces cattleya NRRL 8057 = DSM 46488  
Streptomyces scabiei 87.22  
Streptomyces hygroscopicus subsp. jinggangensis 5008  
Tropheryma Tropheryma whipplei TW08/27  
Leifsonia Leifsonia xyli subsp. xyli str. CTCB07  
Clavibacter Clavibacter michiganensis subsp. michiganensis NCPPB 382  
Microbacterium Microbacterium testaceum StLB037  
Arthrobacter Arthrobacter sp. Rue61a  
Arthrobacter sp. FB24  
Renibacterium Renibacterium salmoninarum ATCC 33209  
Kocuria Kocuria rhizophila DC2201  
Micrococcus Micrococcus luteus NCTC 2665  
Rothia Rothia mucilaginosa DY-18  
Rothia dentocariosa ATCC 17931  
Beutenbergia Beutenbergia cavernae DSM 12333  
Brachybacterium Brachybacterium faecium DSM 4810  
Jonesia Jonesia denitrificans DSM 20603  
Kytococcus Kytococcus sedentarius DSM 20547  
Xylanimonas Xylanimonas cellulosilytica DSM 15894  
Isoptericola Isoptericola variabilis 225  
Sanguibacter Sanguibacter keddieii DSM 10542  
Cellulomonas Cellulomonas flavigena DSM 20109  
Cellulomonas fimi ATCC 484  
[Cellvibrio] gilvus ATCC 13127  
Intrasporangium Intrasporangium calvum DSM 43043  
Propionibacterium Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1  
Nocardioides Nocardioides sp. JS614  
Kribbella Kribbella flavida DSM 17836  
Thermobifida Thermobifida fusca YX  
Nocardiopsis Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  
Thermomonospora Thermomonospora curvata DSM 43183  
Streptosporangium Streptosporangium roseum DSM 43021  
Frankia Frankia symbiont of Datisca glomerata  
Frankia sp. EAN1pec  
Frankia alni ACN14a  
Acidothermus Acidothermus cellulolyticus 11B  
Nakamurella Nakamurella multipartita DSM 44233  
Geodermatophilus Geodermatophilus obscurus DSM 43160  
Kineococcus Kineococcus radiotolerans SRS30216  
Saccharopolyspora Saccharopolyspora erythraea NRRL 2338  
Saccharomonospora Saccharomonospora viridis DSM 43017  
Thermobispora Thermobispora bispora DSM 43833  
Amycolatopsis Amycolatopsis mediterranei U32  
Pseudonocardia Pseudonocardia dioxanivorans CB1190  
Actinosynnema Actinosynnema mirum DSM 43827  
Salinispora Salinispora arenicola CNS-205  
Salinispora tropica CNB-440  
Micromonospora Micromonospora sp. L5  
Micromonospora aurantiaca ATCC 27029  
Verrucosispora Verrucosispora maris AB-18-032  
Catenulispora Catenulispora acidiphila DSM 44928  
Stackebrandtia Stackebrandtia nassauensis DSM 44728  
Arcanobacterium Arcanobacterium haemolyticum DSM 20595  
Mobiluncus Mobiluncus curtisii ATCC 43063  
Bifidobacterium Bifidobacterium longum subsp. longum JDM301  
Bifidobacterium animalis subsp. lactis Bl-04  
Bifidobacterium dentium Bd1  
Bifidobacterium breve ACS-071-V-Sch8b  
Bifidobacterium bifidum S17  
Bifidobacterium adolescentis ATCC 15703  
Gardnerella Gardnerella vaginalis 409-05  
Rubrobacter Rubrobacter xylanophilus DSM 9941  
Conexibacter Conexibacter woesei DSM 14684  
Acidimicrobium Acidimicrobium ferrooxidans DSM 10331  
Cryptobacterium Cryptobacterium curtum DSM 15641  
Slackia Slackia heliotrinireducens DSM 20476  
Atopobium Atopobium parvulum DSM 20469  
Eggerthella Eggerthella sp. YY7918  
Eggerthella lenta DSM 2243  
Olsenella Olsenella uli DSM 7084  
Coriobacterium Coriobacterium glomerans PW2  
Actinobacteria/Others Modestobacter marinus  
Blastococcus saxobsidens DD2  
Kitasatospora setae KM-6054  
Propionibacterium propionicum F0230a  
Propionibacterium acnes SK137  
Microlunatus phosphovorus NM-1  
Actinoplanes sp. N902-109  
Actinoplanes sp. SE50/110  
Actinoplanes missouriensis 431  
Arthrobacter phenanthrenivorans Sphe3  
Arthrobacter chlorophenolicus A6  
Arthrobacter aurescens TC1  
Arthrobacter arilaitensis Re117  
Actinomyces sp. F0330  
Chlamydiae Chlamydia Chlamydophila pecorum E58  
Chlamydia muridarum Nigg  
Chlamydophila pneumoniae TW-183  
Chlamydophila caviae GPIC  
Chlamydophila felis Fe/C-56  
Chlamydophila abortus S26/3  
Chlamydia psittaci 01DC11  
Chlamydia trachomatis B/Jali20/OT  
Protochlamydia Candidatus Protochlamydia amoebophila UWE25  
Waddlia Waddlia chondrophila WSU 86-1044  
Chlamydiae/Others Parachlamydia acanthamoebae UV-7  
Simkania negevensis Z  
Spirochaetes Borrelia Borrelia recurrentis A1  
Borrelia duttonii Ly  
Borrelia crocidurae str. Achema  
Borrelia turicatae 91E135  
Borrelia hermsii DAH  
Treponema Spirochaeta caldaria DSM 7334  
Treponema azotonutricium ZAS-9  
Treponema primitia ZAS-2  
Treponema brennaborense DSM 12168  
Treponema paraluiscuniculi Cuniculi A  
Treponema succinifaciens DSM 2489  
Treponema pallidum subsp. pallidum SS14  
Treponema denticola ATCC 35405  
Spirochaeta Spirochaeta africana DSM 8902  
Spirochaeta thermophila DSM 6192  
Leptospira Leptospira borgpetersenii serovar Hardjo-bovis str. L550  
Leptospira interrogans serovar Lai str. IPAV  
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'  
Brachyspira Brachyspira murdochii DSM 12563  
Brachyspira intermedia PWS/A  
Brachyspira pilosicoli 95/1000  
Brachyspira hyodysenteriae WA1  
Spirochaetes/Others Turneriella parva DSM 21527  
Borrelia garinii PBi  
Borrelia bissettii DN127  
Borrelia afzelii PKo  
Borrelia burgdorferi B31  
Spirochaeta smaragdinae DSM 11293  
Sphaerochaeta pleomorpha str. Grapes  
Sphaerochaeta globus str. Buddy  
Sphaerochaeta coccoides DSM 17374  
Acidobacteria Koribacter Candidatus Koribacter versatilis Ellin345  
Acidobacterium Acidobacterium capsulatum ATCC 51196  
Terriglobus Terriglobus saanensis SP1PR4  
Terriglobus roseus DSM 18391  
Solibacter Candidatus Solibacter usitatus Ellin6076  
Acidobacteria/Others Candidatus Chloracidobacterium thermophilum B  
Granulicella tundricola MP5ACTX9  
Granulicella mallensis MP5ACTX8  
Bacteroidetes Bacteroides Bacteroides salanitronis DSM 18170  
Bacteroides helcogenes P 36-108  
Bacteroides vulgatus ATCC 8482  
Bacteroides uniformis  
Bacteroides thetaiotaomicron VPI-5482  
Bacteroides fragilis YCH46  
Porphyromonas Porphyromonas asaccharolytica DSM 20707  
Porphyromonas gingivalis ATCC 33277  
Parabacteroides Parabacteroides distasonis ATCC 8503  
Paludibacter Paludibacter propionicigenes WB4  
Odoribacter Odoribacter splanchnicus DSM 20712  
Prevotella Prevotella melaninogenica ATCC 25845  
Prevotella intermedia 17  
Prevotella denticola F0289  
Prevotella ruminicola 23  
Salinibacter Salinibacter ruber M8  
Rhodothermus Rhodothermus marinus DSM 4252  
Chitinophaga Chitinophaga pinensis DSM 2588  
Pedobacter Pedobacter heparinus DSM 2366  
Sphingobacterium Sphingobacterium sp. 21  
Haliscomenobacter Haliscomenobacter hydrossis DSM 1100  
Cytophaga Cytophaga hutchinsonii ATCC 33406  
Dyadobacter Dyadobacter fermentans DSM 18053  
Spirosoma Spirosoma linguale DSM 74  
Leadbetterella Leadbetterella byssophila DSM 17132  
Marivirga Marivirga tractuosa DSM 4126  
Gramella Gramella forsetii KT0803  
Flavobacterium Flavobacterium indicum GPTSA100-9  
Flavobacterium psychrophilum JIP02/86  
Flavobacterium branchiophilum FL-15  
Flavobacterium columnare ATCC 49512  
Flavobacterium johnsoniae UW101  
Capnocytophaga Capnocytophaga canimorsus Cc5  
Capnocytophaga ochracea DSM 7271  
Robiginitalea Robiginitalea biformata HTCC2501  
Zunongwangia Zunongwangia profunda SM-A87  
Croceibacter Croceibacter atlanticus HTCC2559  
Riemerella Riemerella anatipestifer ATCC 11845 = DSM 15868  
Maribacter Maribacter sp. HTCC2170  
Cellulophaga Cellulophaga algicola DSM 14237  
Cellulophaga lytica DSM 7489  
Weeksella Weeksella virosa DSM 16922  
Krokinobacter Krokinobacter sp. 4H-3-7-5  
Unclassified Flavobacteriaceae Flavobacteriaceae bacterium 3519-10  
Sulcia Candidatus Sulcia muelleri DMIN  
Candidatus Sulcia muelleri SMDSEM  
Blattabacterium Blattabacterium sp. (Nauphoeta cinerea)  
Blattabacterium sp. (Blattella germanica) str. Bge  
Fluviicola Fluviicola taffensis DSM 16823  
Amoebophilus Candidatus Amoebophilus asiaticus 5a2  
Bacteroidetes/Others Saprospira grandis str. Lewin  
Niastella koreensis GR20-10  
Flexibacter litoralis DSM 6794  
Candidatus Cardinium hertigii  
Belliella baltica DSM 15883  
Cyclobacterium marinum DSM 745  
Fibrella aestuarina  
Runella slithyformis DSM 19594  
Tannerella forsythia ATCC 43037  
Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2  
Bacteroides sp. CF50  
Alistipes finegoldii DSM 17242  
Pedobacter saltans DSM 12145  
Solitalea canadensis DSM 3403  
Owenweeksia hongkongensis DSM 17368  
Lacinutrix sp. 5H-3-7-4  
Aequorivita sublithincola DSM 14238  
Zobellia galactanivorans  
Muricauda ruestringensis DSM 13258  
Polaribacter sp. MED152  
Ornithobacterium rhinotracheale DSM 15997  
Fibrobacteres Fibrobacter Fibrobacter succinogenes subsp. succinogenes S85  
Fusobacteria Fusobacterium Fusobacterium nucleatum subsp. nucleatum ATCC 25586  
Leptotrichia Leptotrichia buccalis C-1013-b  
Sebaldella Sebaldella termitidis ATCC 33386  
Streptobacillus Streptobacillus moniliformis DSM 12112  
Ilyobacter Ilyobacter polytropus DSM 2926  
Verrucomicrobia Opitutus Opitutus terrae PB90-1  
Coraliomargarita Coraliomargarita akajimensis DSM 45221  
Methylacidiphilum Methylacidiphilum infernorum V4  
Akkermansia Akkermansia muciniphila ATCC BAA-835  
Gemmatimonadetes Gemmatimonas Gemmatimonas aurantiaca T-27  
Planctomycetes Rhodopirellula Rhodopirellula baltica SH 1  
Pirellula Pirellula staleyi DSM 6068  
Isosphaera Isosphaera pallida ATCC 43644  
Planctomycetes/Others Planctomyces brasiliensis DSM 5305  
Planctomyces limnophilus DSM 3776  
Elusimicrobia Elusimicrobium Elusimicrobium minutum Pei191  
Termite group 1 uncultured Termite group 1 bacterium phylotype Rs-D17  
Synergistetes Thermanaerovibrio Thermanaerovibrio acidaminovorans DSM 6589  
Aminobacterium Aminobacterium colombiense DSM 12261  
Synergistetes/Others Fretibacterium fastidiosum  
Thermovirga lienii DSM 17291  
Anaerobaculum mobile DSM 13181  
Cyanobacteria Synechocystis Synechocystis sp. PCC 6803  
Synechococcus Synechococcus sp. PCC 7502  
Synechococcus sp. PCC 6312  
Synechococcus sp. CC9311  
Synechococcus elongatus PCC 7942  
Thermosynechococcus Thermosynechococcus sp. NK55  
Thermosynechococcus elongatus BP-1  
Microcystis Microcystis aeruginosa NIES-843  
Cyanothece Cyanothece sp. PCC 8802  
Gloeobacter Gloeobacter violaceus PCC 7421  
Nostoc Nostoc sp. PCC 7107  
Nostoc punctiforme PCC 73102  
Nostoc sp. PCC 7120  
Nostoc sp. PCC 7524  
Prochlorococcus Prochlorococcus marinus str. MIT 9515  
Trichodesmium Trichodesmium erythraeum IMS101  
Acaryochloris Acaryochloris marina MBIC11017  
Cyanobacteria/Others Leptolyngbya sp. PCC 7376  
Pseudanabaena sp. PCC 7367  
Microcoleus sp. PCC 7113  
Geitlerinema sp. PCC 7407  
Gloeocapsa sp. PCC 7428  
cyanobacterium UCYN-A  
Halothece sp. PCC 7418  
Rivularia sp. PCC 7116  
Calothrix sp. PCC 7507  
Anabaena variabilis ATCC 29413  
'Nostoc azollae' 0708  
Anabaena sp. 90  
Green sulfur bacteria Chlorobaculum Chlorobaculum parvum NCIB 8327  
Chlorobium tepidum TLS  
Chlorobium Chlorobium chlorochromatii CaD3  
Chlorobium phaeobacteroides DSM 266  
Chlorobium phaeovibrioides DSM 265  
Chlorobium limicola DSM 245  
Pelodictyon Pelodictyon phaeoclathratiforme BU-1  
Chlorobium luteolum DSM 273  
Prosthecochloris Prosthecochloris aestuarii DSM 271  
Chloroherpeton Chloroherpeton thalassium ATCC 35110  
Green nonsulfur bacteria Dehalococcoides Dehalococcoides ethenogenes 195  
Dehalococcoides sp. BAV1  
Dehalogenimonas Dehalogenimonas lykanthroporepellens BL-DC-9  
Roseiflexus Roseiflexus sp. RS-1  
Roseiflexus castenholzii DSM 13941  
Chloroflexus Chloroflexus sp. MS-G  
Chloroflexus sp. Y-400-fl  
Chloroflexus aggregans DSM 9485  
Chloroflexus aurantiacus J-10-fl  
Herpetosiphon Herpetosiphon aurantiacus DSM 785  
Thermomicrobium Thermomicrobium roseum DSM 5159  
Sphaerobacterineae Sphaerobacter thermophilus DSM 20745  
Anaerolinea Anaerolinea thermophila UNI-1  
Green nonsulfur bacteria/Other Caldilinea aerophila DSM 14535 = NBRC 104270  
Deinococcus-Thermus Deinococcus Deinococcus gobiensis I-0  
Deinococcus deserti VCD115  
Deinococcus maricopensis DSM 21211  
Deinococcus geothermalis DSM 11300  
Deinococcus proteolyticus MRP  
Deinococcus radiodurans R1  
Truepera Truepera radiovictrix DSM 17093  
Thermus Thermus sp. CCB_US3_UF1  
Thermus scotoductus SA-01  
Thermus thermophilus HB27  
Meiothermus Meiothermus silvanus DSM 9946  
Meiothermus ruber DSM 1279  
Oceanithermus Oceanithermus profundus DSM 14977  
Marinithermus Marinithermus hydrothermalis DSM 14884  
Hyperthermophilic bacteria Aquifex Aquifex aeolicus VF5  
Hydrogenobaculum Hydrogenobaculum sp. SN  
Hydrogenobaculum sp. HO  
Hydrogenobaculum sp. Y04AAS1  
Hydrogenobacter Hydrogenobacter thermophilus TK-6  
Thermocrinis Thermocrinis albus DSM 14484  
Sulfurihydrogenibium Sulfurihydrogenibium sp. YO3AOP1  
Sulfurihydrogenibium azorense Az-Fu1  
Persephonella Persephonella marina EX-H1  
Thermovibrio Thermovibrio ammonificans HB-1  
Desulfurobacterium Desulfurobacterium thermolithotrophum DSM 11699  
Thermotoga Thermotoga sp. RQ2  
Thermotoga naphthophila RKU-10  
Thermotoga petrophila RKU-1  
Thermotoga neapolitana DSM 4359  
Thermotoga maritima MSB8  
Thermosipho Thermosipho melanesiensis BI429  
Thermosipho africanus TCF52B  
Fervidobacterium Fervidobacterium pennivorans DSM 9078  
Fervidobacterium nodosum Rt17-B1  
Petrotoga Petrotoga mobilis SJ95  
Kosmotoga Kosmotoga olearia TBF 19.5.1  
Dictyoglomus Dictyoglomus turgidum DSM 6724  
Dictyoglomus thermophilum H-6-12  
Thermodesulfovibrio Thermodesulfovibrio yellowstonii DSM 11347  
Nitrospira Candidatus Nitrospira defluvii  
Thermobaculum Thermobaculum terrenum ATCC BAA-798  
Deferribacter Deferribacter desulfuricans SSM1  
Denitrovibrio Denitrovibrio acetiphilus DSM 12809  
Calditerrivibrio Calditerrivibrio nitroreducens DSM 19672  
Bacteria/Others Ilumatobacter coccineus  
Candidatus Cloacamonas acidaminovorans  
Melioribacter roseus P3M  
Ignavibacterium album JCM 16511  
Phycisphaera mikurensis NBRC 102666  
Thermodesulfatator indicus DSM 15286  
Thermodesulfobacterium sp. OPB45  
Flexistipes sinusarabici DSM 4947  
Marinitoga piezophila KA3  
Mesotoga prima MesG1.Ag.4.2  
Thermotoga lettingae TMO  
Thermotoga thermarum DSM 5069  
Caldisericum exile AZM16c01  
Leptospirillum ferrooxidans C2-3  
Candidatus Methylomirabilis oxyfera  
candidate division WWE3 bacterium RAAC2_WWE3_1  
candidate division SR1 bacterium RAAC1_SR1_1  
Candidatus Saccharibacteria bacterium RAAC3_TM7_1  
Candidatus Saccharimonas aalborgensis  
Bacteriovorax marinus SJ  
Archaea Euryarchaeota Methanocaldococcus Methanocaldococcus sp. FS406-22  
Methanocaldococcus fervens AG86  
Methanocaldococcus vulcanius M7  
methanocaldococcus infernus ME  
Methanocaldococcus jannaschii DSM 2661  
Methanotorris Methanotorris igneus Kol 5  
Methanococcus Methanococcus aeolicus Nankai-3  
Methanococcus maripaludis C5  
Methanococcus voltae A3  
Methanococcus vannielii SB  
Methanosarcina Methanosarcina acetivorans C2A  
Methanosarcina mazei Go1  
Methanosarcina barkeri str. Fusaro  
Methanococcoides Methanococcoides burtonii DSM 6242  
Methanohalophilus Methanohalophilus mahii DSM 5219  
Methanohalobium Methanohalobium evestigatum Z-7303  
Methanosaeta Methanosaeta harundinacea 6Ac  
Methanosaeta thermophila PT  
Methanosaeta concilii GP6  
Methanospirillum Methanospirillum hungatei JF-1  
Methanocorpusculum Methanocorpusculum labreanum Z  
Methanoculleus Methanoculleus bourgensis MS2  
Methanoculleus marisnigri JR1  
Methanoregula Methanoregula boonei 6A8  
Methanosphaerula Methanosphaerula palustris E1-9c  
Methanocella Methanocella arvoryzae MRE50  
Methanocella conradii HZ254  
Methanocella paludicola SANAE  
Methanothermobacter Methanothermobacter marburgensis str. Marburg  
Methanothermobacter thermautotrophicus str. Delta H  
Methanosphaera Methanosphaera stadtmanae DSM 3091  
Methanobrevibacter Methanobrevibacter sp. AbM4  
Methanobrevibacter ruminantium M1  
Methanobrevibacter smithii ATCC 35061  
Methanobacterium Complete genome sequence of Methanobacterium sp. Mb1  
Methanothermus Methanothermus fervidus DSM 2088  
Methanopyrus Methanopyrus kandleri AV19  
Archaeoglobus Archaeoglobus profundus DSM 5631  
Archaeoglobus veneficus SNP6  
Archaeoglobus fulgidus DSM 4304  
Ferroglobus Ferroglobus placidus DSM 10642  
Halobacterium Halobacterium salinarum R1  
Halobacterium sp. NRC-1  
Haloarcula Haloarcula hispanica ATCC 33960  
Haloarcula marismortui ATCC 43049  
Haloquadratum Haloquadratum walsbyi DSM 16790  
Natronomonas Natronomonas pharaonis DSM 2160  
Halorubrum Halorubrum lacusprofundi ATCC 49239  
Halorhabdus Halorhabdus utahensis DSM 12940  
Halomicrobium Halomicrobium mukohataei DSM 12286  
Haloterrigena Haloterrigena turkmenica DSM 5511  
Natrialba Natrialba magadii ATCC 43099  
Haloferax Haloferax mediterranei ATCC 33500  
Haloferax volcanii DS2  
Halalkalicoccus Halalkalicoccus jeotgali B3  
Halogeometricum Halogeometricum borinquense DSM 11551  
Thermoplasma Thermoplasma volcanium GSS1  
Thermoplasma acidophilum DSM 1728  
Picrophilus Picrophilus torridus DSM 9790  
Pyrococcus Pyrococcus sp. ST04  
Pyrococcus yayanosii CH1  
Pyrococcus horikoshii OT3  
Pyrococcus abyssi GE5  
Pyrococcus furiosus COM1  
Thermococcus Thermococcus sp. 4557  
Thermococcus onnurineus NA1  
Thermococcus kodakarensis KOD1  
Thermococcus gammatolerans EJ3  
Thermococcus sibiricus MM 739  
Thermococcus barophilus MP  
Aciduliprofundum Aciduliprofundum sp. MAR08-339  
Aciduliprofundum boonei T469  
Euryarchaeota/Others Methanosalsum zhilinae DSM 4017  
Methanoplanus petrolearius DSM 11571  
Thermoplasmatales archaeon BRNA1  
Salinarchaeum sp. Harcht-Bsk1  
Halopiger xanaduensis SH-6  
Natrinema sp. J7-2  
Methanothermococcus okinawensis IH1  
Crenarchaeota Aeropyrum Aeropyrum pernix K1  
Staphylothermus Staphylothermus hellenicus DSM 12710  
Staphylothermus marinus F1  
Ignicoccus Ignicoccus hospitalis KIN4/I  
Desulfurococcus Desulfurococcus fermentans DSM 16532  
Desulfurococcus kamchatkensis 1221n  
Desulfurococcus mucosus DSM 2162  
Thermosphaera Thermosphaera aggregans DSM 11486  
Ignisphaera Ignisphaera aggregans DSM 17230  
Hyperthermus Hyperthermus butylicus DSM 5456  
Sulfolobus Sulfolobus tokodaii str. 7  
Sulfolobus islandicus Y.N.15.51  
Sulfolobus solfataricus P2  
Sulfolobus acidocaldarius DSM 639  
Metallosphaera Metallosphaera cuprina Ar-4  
Metallosphaera sedula DSM 5348  
Acidianus Acidianus hospitalis W1  
Pyrobaculum Pyrobaculum sp. 1860  
Pyrobaculum calidifontis JCM 11548  
Pyrobaculum arsenaticum DSM 13514  
Pyrobaculum oguniense TE7  
Thermoproteus neutrophilus V24Sta  
Pyrobaculum aerophilum str. IM2  
Pyrobaculum islandicum DSM 4184  
Caldivirga Caldivirga maquilingensis IC-167  
Thermoproteus Thermoproteus uzoniensis 768-20  
Thermoproteus tenax Kra 1  
Vulcanisaeta Vulcanisaeta moutnovskia 768-28  
Vulcanisaeta distributa DSM 14429  
Thermofilum Thermofilum sp. 1910b  
Thermofilum pendens Hrk 5  
Acidilobus Acidilobus saccharovorans 345-15  
Crenarchaeota/Others Fervidicoccus fontis Kam940  
Pyrolobus fumarii 1A  
Thermogladius cellulolyticus 1633  
Thaumarchaeota Nitrosopumilus Candidatus Nitrosopumilus sp. AR2  
Nitrosopumilus maritimus SCM1  
Cenarchaeum Cenarchaeum symbiosum A  
Thaumarchaeota/Others Candidatus Caldiarchaeum subterraneum  
Nanoarchaeota Nanoarchaeum Nanoarchaeum equitans Kin4-M  
Korarchaeota Korarchaeum Candidatus Korarchaeum cryptofilum OPF8  
Archaea/Others halophilic archaeon DL31  

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Eukaryote strains/versions
Category Organism
Animals Vertebrates Amphibians Xenopus (Silurana) tropicalis v7.1 (annotation v7.2)   (Western clawed frog)  
Arthropods Insects Drosophila melanogaster FlyBase 5.12   (Fruit fly)  
Anopheles gambiae VectorBase AgamP3.6   (African malaria mosquito)  
Nematodes Ascaris suum Victoria/Ghent   (Pig roundworm)  
Caenorhabditis elegans WormBase WS218   (Roundworm)  
Plants Eudicots Mallow family Theobroma cacao Matina 1-6 v0.9   (Chocolate)  
Monocots Grass family Hordeum vulgare 22   (Two-rowed barley)  
Oryza sativa ssp. Indica   (Indian rice)  
Fungi Ascomycetes Saccharomycetes Candida albicans WO-1  
Saccharomyces cerevisiae UC5  
Saccharomyces cerevisiae PW5  
Saccharomyces cerevisiae FL100  
Saccharomyces cerevisiae CLIB382  
Saccharomyces cerevisiae CLIB324  
Saccharomyces cerevisiae CBS7960  
Saccharomyces cerevisiae YJM269  
Saccharomyces cerevisiae T7  
Saccharomyces cerevisiae FostersB  
Saccharomyces cerevisiae FostersO  
Saccharomyces cerevisiae VL3  
Saccharomyces cerevisiae Vin13  
Saccharomyces cerevisiae LalvinQA23  
Saccharomyces cerevisiae AWRI796  
Saccharomyces cerevisiae Sigma1278b  
Saccharomyces cerevisiae W303  
Saccharomyces cerevisiae JAY291  
Saccharomyces cerevisiae AWRI1631  
Saccharomyces cerevisiae YPS163  
Saccharomyces cerevisiae M22  
Saccharomyces cerevisiae T73  
Saccharomyces cerevisiae CLIB215  
Saccharomyces cerevisiae Y10  
Saccharomyces cerevisiae YJM789  
Saccharomyces cerevisiae YJM789  
Saccharomyces cerevisiae RM11-1a  
Saccharomyces cerevisiae RM11-1a  
Saccharomyces cerevisiae SGD   (Brewer's yeast)  
Eurotiomycetes Paracoccidioides brasiliensis Pb01  
Paracoccidioides brasiliensis Pb03  
Coccidioides posadasii str. Silveira  
Coccidioides immitis RMSCC 3703  
Coccidioides immitis RMSCC 2394  
Coccidioides immitis H538.4  
Ajellomyces dermatitidis ER-3  
Histoplasma capsulatum H143  
Histoplasma capsulatum H88  
Histoplasma capsulatum G186AR  
Aspergillus fumigatus A1163  
Schizosaccharomycetes Schizosaccharomyces pombe 972h-  
Basidiomycetes Cryptococcus neoformans var. grubii H99  
Cryptococcus neoformans B-3501A  
Cryptococcus neoformans JEC21  
Chytridiomycetes Batrachochytrium dendrobatidis JEL423  
Batrachochytrium dendrobatidis JAM81  
Protists Alveolates Apicomplexans Neospora caninum Nc-Liverpool 6.2  
Plasmodium falciparum HB3  
Plasmodium falciparum Dd2  
Euglenozoa Kinetoplasts Trypanosoma brucei Lister 427 v4.1  

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Prokaryote strains
Category Organism
Bacteria Gammaproteobacteria Escherichia Escherichia coli E24377A  
Escherichia coli E. coli PMV-1  
Escherichia coli JJ1886  
Escherichia coli LY180  
Escherichia coli APEC O78  
Escherichia coli O7:K1 str. CE10  
Escherichia coli O104:H4 str. 2009EL-2050  
Escherichia coli O104:H4 str. 2009EL-2071  
Escherichia coli O104:H4 str. 2011C-3493  
Escherichia coli NA114  
Escherichia coli P12b  
Escherichia coli str. 'clone D i2'  
Escherichia coli str. 'clone D i14'  
Escherichia coli UM146  
Escherichia coli 042  
Escherichia coli Xuzhou21  
Escherichia coli IHE3034  
Escherichia coli UMNK88  
Escherichia coli O83:H1 str. NRG 857C  
Escherichia coli ABU 83972  
Escherichia coli KO11FL  
Escherichia coli KO11FL  
Escherichia coli LF82  
Escherichia coli ED1a  
Escherichia coli IAI39  
Escherichia coli UMN026  
Escherichia coli 55989  
Escherichia coli S88  
Escherichia coli IAI1  
Escherichia coli W  
Escherichia coli W  
Escherichia coli DH1  
Escherichia coli DH1  
Escherichia coli ATCC 8739  
Escherichia coli BL21(DE3)  
Escherichia coli BL21(DE3)  
Escherichia coli SMS-3-5  
Escherichia coli SE15  
Escherichia coli SE11  
Escherichia coli APEC O1  
Escherichia coli O103:H2 str. 12009  
Escherichia coli UTI89  
Escherichia coli 536  
Escherichia coli HS  
Escherichia coli ETEC H10407  
Escherichia coli O55:H7 str. RM12579  
Escherichia coli O55:H7 str. CB9615  
Escherichia coli O26:H11 str. 11368  
Escherichia coli CFT073  
Escherichia coli O111:H- str. 11128  
Escherichia coli O127:H6 str. E2348/69  
Escherichia coli O157:H7 str. TW14359  
Escherichia coli O157:H7 str. EC4115  
Escherichia coli O157:H7 str. Sakai  
Escherichia coli O157:H7 str. EDL933  
Escherichia coli str. K-12 substr. MDS42  
Escherichia coli BW2952  
Escherichia coli str. K-12 substr. MG1655  
Escherichia coli str. K-12 substr. W3110  
Escherichia coli str. K-12 substr. DH10B  
Escherichia coli B str. REL606  
Salmonella Salmonella bongori N268-08  
Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980  
Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736  
Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992  
Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  
Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050  
Salmonella enterica subsp. enterica serovar Enteritidis str. P125109  
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67  
Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1  
Salmonella enterica subsp. enterica serovar Newport str. SL254  
Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  
Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921  
Salmonella enterica subsp. enterica serovar Typhimurium str. U288  
Salmonella enterica subsp. enterica serovar Typhimurium str. 798  
Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1  
Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74  
Salmonella enterica subsp. enterica serovar Typhimurium str. T000240  
Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2  
Salmonella enterica subsp. enterica serovar Typhimurium str. D23580  
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344  
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S  
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2  
Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104  
Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12  
Salmonella enterica subsp. enterica serovar Typhi str. Ty21a  
Salmonella enterica subsp. enterica serovar Typhi str. CT18  
Salmonella enterica subsp. enterica serovar Typhi str. Ty2  
Salmonella enterica serovar Bovismorbificans genomics  
Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189  
Salmonella enterica subsp. enterica serovar Agona str. 24249  
Salmonella enterica subsp. enterica serovar Agona str. SL483  
Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1  
Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7  
Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601  
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150  
Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069  
Salmonella enterica subsp. enterica serovar Heidelberg str. B182  
Salmonella enterica subsp. enterica serovar Heidelberg str. 41578  
Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  
Salmonella enterica subsp. enterica serovar Pullorum str. S06004  
Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67  
Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078  
Salmonella enterica subsp. enterica serovar Thompson str. RM6836  
Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91  
Yersinia Yersinia pseudotuberculosis PB1/+  
Yersinia pseudotuberculosis YPIII  
Yersinia pseudotuberculosis IP 32953  
Yersinia pestis biovar Microtus str. 91001  
Yersinia pestis A1122  
Yersinia pestis Z176003  
Yersinia pestis D182038  
Yersinia pestis D106004  
Yersinia pestis biovar Medievalis str. Harbin 35  
Yersinia pestis Nepal516  
Yersinia pestis Antiqua  
Yersinia pestis Angola  
Yersinia pestis CO92  
Yersinia pestis KIM10+  
Yersinia enterocolitica subsp. palearctica 105.5R(r)  
Yersinia enterocolitica subsp. palearctica Y11  
Shigella Shigella sonnei 53G  
Shigella flexneri 2002017  
Shigella flexneri 2a str. 2457T  
Shigella flexneri 2a str. 301  
Shigella dysenteriae 1617  
Shigella boydii Sb227  
Pectobacterium Pectobacterium carotovorum subsp. carotovorum PCC21  
Erwinia Erwinia pyrifoliae DSM 12163  
Erwinia amylovora CFBP1430  
Buchnera Buchnera aphidicola str. Ak (Acyrthosiphon kondoi)  
Buchnera aphidicola (Cinara tujafilina)  
Buchnera aphidicola str. Bp (Baizongia pistaciae)  
Buchnera aphidicola str. Ua (Uroleucon ambrosiae)  
Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)  
Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)  
Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)  
Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)  
Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)  
Buchnera aphidicola str. 5A (Acyrthosiphon pisum)  
Buchnera aphidicola str. APS (Acyrthosiphon pisum)  
Buchnera aphidicola str. Sg (Schizaphis graminum)  
Wigglesworthia Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitans (Yale colony)  
Enterobacter Enterobacter cloacae SCF1  
Enterobacter cloacae EcWSU1  
Enterobacter cloacae subsp. cloacae ENHKU01  
Enterobacter cloacae subsp. cloacae NCTC 9394  
Enterobacter cloacae subsp. cloacae ATCC 13047  
Cronobacter Cronobacter sakazakii CMCC 45402  
Cronobacter sakazakii SP291  
Cronobacter sakazakii ATCC BAA-894  
Klebsiella Klebsiella oxytoca KCTC 1686  
Klebsiella pneumoniae JM45  
Klebsiella pneumoniae CG43  
Klebsiella pneumoniae KCTC 2242  
Klebsiella pneumoniae 342  
Klebsiella pneumoniae subsp. pneumoniae 1084  
Klebsiella pneumoniae subsp. pneumoniae HS11286  
Klebsiella pneumoniae subsp. pneumoniae MGH 78578  
Klebsiella pneumoniae subsp. rhinoscleromatis SB3432  
Enterobacter aerogenes EA1509E  
Serratia Serratia sp. AS13  
Serratia plymuthica S13  
Serratia plymuthica 4Rx13  
Serratia marcescens FGI94  
Serratia marcescens WW4  
Serratia liquefaciens ATCC 27592  
Proteus Proteus mirabilis BB2000  
Edwardsiella Edwardsiella tarda C07-087  
Edwardsiella tarda FL6-60  
Blochmannia Candidatus Blochmannia chromaiodes str. 640  
Candidatus Blochmannia vafer str. BVAF  
Candidatus Blochmannia pennsylvanicus str. BPEN  
Dickeya Dickeya dadantii Ech586  
Dickeya dadantii 3937  
Pantoea Pantoea ananatis LMG 5342  
Pantoea ananatis PA13  
Pantoea ananatis AJ13355  
Rahnella Rahnella aquatilis HX2  
Haemophilus Haemophilus parasuis ZJ0906  
Haemophilus influenzae KR494  
Haemophilus influenzae F3047  
Haemophilus influenzae F3031  
Haemophilus influenzae 10810  
Haemophilus influenzae PittGG  
Haemophilus influenzae 86-028NP  
Haemophilus influenzae R2866  
Haemophilus influenzae R2846  
Haemophilus influenzae Rd KW20  
Histophilus Haemophilus somnus 2336  
Pasteurella Pasteurella multocida 36950  
Pasteurella multocida subsp. multocida str. HN06  
Pasteurella multocida subsp. multocida str. Pm70  
Mannheimia Mannheimia haemolytica USMARC_2286  
Mannheimia haemolytica M42548  
Mannheimia haemolytica D174  
Mannheimia haemolytica D171  
Mannheimia haemolytica D153  
Mannheimia haemolytica USDA-ARS-USMARC-183  
Mannheimia haemolytica USDA-ARS-USMARC-185  
Actinobacillus Actinobacillus suis H91-0380  
Actinobacillus pleuropneumoniae serovar 3 str. JL03  
Actinobacillus pleuropneumoniae serovar 7 str. AP76  
Aggregatibacter Aggregatibacter actinomycetemcomitans ANH9381  
Aggregatibacter actinomycetemcomitans D11S-1  
Xylella Xylella fastidiosa subsp. fastidiosa GB514  
Xylella fastidiosa M12  
Xylella fastidiosa Temecula1  
Xylella fastidiosa 9a5c  
Xanthomonas Xanthomonas citri subsp. citri Aw12879  
Xanthomonas campestris pv. vesicatoria str. 85-10  
Xanthomonas axonopodis pv. citrumelo F1  
Xanthomonas axonopodis Xac29-1  
Xanthomonas oryzae pv. oryzicola BLS256  
Xanthomonas oryzae pv. oryzae MAFF 311018  
Xanthomonas oryzae pv. oryzae KACC 10331  
Xanthomonas campestris pv. raphani 756C  
Xanthomonas campestris pv. campestris str. 8004  
Xanthomonas campestris pv. campestris str. ATCC 33913  
Stenotrophomonas Stenotrophomonas maltophilia D457  
Stenotrophomonas maltophilia JV3  
Stenotrophomonas maltophilia R551-3  
Vibrio Vibrio sp. EJY3  
Vibrio parahaemolyticus BB22OP  
Vibrio alginolyticus NBRC 15630 = ATCC 17749  
Vibrio anguillarum Listonella anguillarum M3  
Vibrio nigripulchritudo VibrioScope  
Vibrio vulnificus CMCP6  
Vibrio vulnificus YJ016  
Vibrio cholerae LMA3984-4  
Vibrio cholerae M66-2  
Vibrio cholerae O395  
Vibrio cholerae IEC224  
Vibrio cholerae O1 str. 2010EL-1786  
Vibrio cholerae MJ-1236  
Vibrio cholerae O1 biovar El Tor str. N16961  
Aliivibrio Vibrio fischeri ES114  
Pseudomonas Pseudomonas denitrificans ATCC 13867  
Pseudomonas syringae pv. phaseolicola 1448A  
Pseudomonas syringae pv. syringae B728a  
Pseudomonas stutzeri CCUG 29243  
Pseudomonas stutzeri DSM 10701  
Pseudomonas stutzeri DSM 4166  
Pseudomonas stutzeri RCH2  
Pseudomonas stutzeri ATCC 17588 = LMG 11199  
Pseudomonas monteilii SB3101  
Pseudomonas monteilii SB3078  
Pseudomonas putida H8234  
Pseudomonas putida HB3267  
Pseudomonas putida NBRC 14164  
Pseudomonas putida DOT-T1E  
Pseudomonas putida S16  
Pseudomonas putida BIRD-1  
Pseudomonas putida W619  
Pseudomonas putida ND6  
Pseudomonas putida KT2440  
Pseudomonas putida GB-1  
Pseudomonas protegens CHA0  
Pseudomonas poae RE*1-1-14  
Pseudomonas fluorescens F113  
Pseudomonas fluorescens A506  
Pseudomonas fluorescens R124  
Pseudomonas fluorescens Pf0-1  
Pseudomonas resinovorans NBRC 106553  
Pseudomonas mendocina NK-01  
Pseudomonas aeruginosa SCV20265  
Pseudomonas aeruginosa MTB-1  
Pseudomonas aeruginosa LES431  
Pseudomonas aeruginosa RP73  
Pseudomonas aeruginosa B136-33  
Pseudomonas aeruginosa PA1R  
Pseudomonas aeruginosa PA1  
Pseudomonas aeruginosa DK2  
Pseudomonas aeruginosa NCGM2.S1  
Pseudomonas aeruginosa M18  
Pseudomonas aeruginosa LESB58  
Pseudomonas aeruginosa PA7  
Pseudomonas aeruginosa PAO1  
Azotobacter Azotobacter vinelandii CA6  
Azotobacter vinelandii CA  
Acinetobacter Acinetobacter genomosp. 13TU RUH2624  
Acinetobacter sp. SH024  
Acinetobacter calcoaceticus ruh2202  
Acinetobacter baumannii ZW85-1  
Acinetobacter baumannii TYTH-1  
Acinetobacter baumannii BJAB0868  
Acinetobacter baumannii BJAB0715  
Acinetobacter baumannii BJAB07104  
Acinetobacter baumannii TCDC-AB0715  
Acinetobacter baumannii D1279779  
Acinetobacter baumannii MDR-TJ  
Acinetobacter baumannii 1656-2  
Acinetobacter baumannii ATCC 19606  
Acinetobacter baumannii AB307-0294  
Acinetobacter baumannii AYE  
Acinetobacter baumannii SDF  
Acinetobacter baumannii MDR-ZJ06  
Acinetobacter baumannii AB0057  
Acinetobacter baumannii ACICU  
Acinetobacter radioresistens SH164  
Acinetobacter junii SH205  
Acinetobacter johnsonii SH046  
Acinetobacter lwoffii SH145  
Shewanella Shewanella sp. W3-18-1  
Shewanella sp. ANA-3  
Shewanella baltica BA175  
Shewanella baltica OS678  
Shewanella baltica OS117  
Shewanella baltica OS223  
Shewanella baltica OS195  
Shewanella baltica OS155  
Shewanella sp. MR-7  
Shewanella putrefaciens 200  
Idiomarina Idiomarina loihiensis GSL 199  
Alteromonas Alteromonas macleodii str. 'Ionian Sea UM4b'  
Alteromonas macleodii str. 'Ionian Sea UM7'  
Alteromonas macleodii str. 'Ionian Sea U8'  
Alteromonas macleodii str. 'Ionian Sea U7'  
Alteromonas macleodii str. 'Ionian Sea U4'  
Alteromonas macleodii str. 'Aegean Sea MED64'  
Alteromonas macleodii str. 'English Channel 615'  
Alteromonas macleodii AltDE1  
Alteromonas macleodii str. 'English Channel 673'  
Alteromonas macleodii str. 'Balearic Sea AD45'  
Alteromonas macleodii str. 'Black Sea 11'  
Alteromonas macleodii ATCC 27126  
Coxiella Coxiella burnetii CbuK_Q154  
Coxiella burnetii CbuG_Q212  
Coxiella burnetii RSA 331  
Coxiella burnetii RSA 493  
Legionella Legionella pneumophila str. Paris  
Legionella pneumophila str. Lens  
Legionella pneumophila subsp. pneumophila LPE509  
Legionella pneumophila subsp. pneumophila str. Thunder Bay  
Legionella pneumophila subsp. pneumophila str. Philadelphia 1  
Legionella pneumophila subsp. pneumophila  
Legionella pneumophila subsp. pneumophila  
Legionella pneumophila subsp. pneumophila ATCC 43290  
Legionella pneumophila 2300/99 Alcoy  
Francisella Francisella noatunensis subsp. orientalis LADL--07-285A  
Francisella tularensis subsp. mediasiatica FSC147  
Francisella tularensis subsp. holarctica F92  
Francisella tularensis subsp. holarctica FTNF002-00  
Francisella tularensis subsp. holarctica OSU18  
Francisella tularensis subsp. holarctica LVS  
Francisella tularensis subsp. holarctica FSC200  
Francisella tularensis subsp. tularensis TIGB03  
Francisella tularensis subsp. tularensis TI0902  
Francisella tularensis subsp. tularensis NE061598  
Francisella tularensis subsp. tularensis FSC198  
Francisella tularensis subsp. tularensis SCHU S4  
Francisella cf. novicida Fx1  
Thioalkalivibrio Thioalkalivibrio nitratireducens DSM 14787  
Alcanivorax Alcanivorax dieselolei B5  
Aeromonas Aeromonas hydrophila ML09-119  
Acidithiobacillus Acidithiobacillus ferrooxidans ATCC 23270  
Gammaproteobacteria/Others Simiduia agarivorans SA1 = DSM 21679  
Mannheimia succiniciproducens MBEL55E  
Bibersteinia trehalosi USDA-ARS-USMARC-192  
Glaciecola psychrophila 170  
Thalassolituus oleivorans MIL-1  
Candidatus Portiera aleyrodidarum TV  
Candidatus Portiera aleyrodidarum BT-QVLC  
Candidatus Portiera aleyrodidarum BT-Q-AWRs  
Candidatus Portiera aleyrodidarum BT-B-HRs whitefly B from Isarael  
Candidatus Portiera aleyrodidarum BT-B-HRs  
Candidatus Carsonella ruddii PC isolate NHV  
Candidatus Carsonella ruddii HT isolate Thao2000  
Candidatus Carsonella ruddii CS isolate Thao2000  
Candidatus Carsonella ruddii CE isolate Thao2000  
Candidatus Carsonella ruddii DC  
Candidatus Carsonella ruddii HC isolate Thao2000  
Spiribacter salinus M19-40  
Thioflavicoccus mobilis 8321  
Morganella morganii subsp. morganii KT  
Candidatus Moranella endobia PCVAL  
secondary endosymbiont of Heteropsylla cubana Thao2000  
Raoultella ornithinolytica B6  
Methylophaga sp. JAM7  
Cycloclasticus zancles 7-ME  
Betaproteobacteria Neisseria Neisseria meningitidis WUE 2594  
Neisseria meningitidis G2136  
Neisseria meningitidis M04-240196  
Neisseria meningitidis M01-240149  
Neisseria meningitidis NZ-05/33  
Neisseria meningitidis M01-240355  
Neisseria meningitidis 8013  
Neisseria meningitidis 053442  
Neisseria meningitidis Z2491  
Neisseria meningitidis H44/76  
Neisseria meningitidis alpha710  
Neisseria meningitidis MC58  
Neisseria gonorrhoeae TCDC-NG08107  
Neisseria gonorrhoeae FA 1090  
Ralstonia Ralstonia pickettii 12J  
Ralstonia solanacearum FQY_4  
Ralstonia solanacearum Po82  
Ralstonia solanacearum PSI07  
Ralstonia solanacearum CMR15  
Ralstonia solanacearum GMI1000  
Burkholderia Burkholderia sp. YI23  
Burkholderia sp. CCGE1003  
Burkholderia sp. CCGE1001  
Burkholderia sp. KJ006  
Burkholderia thailandensis MSMB121  
Burkholderia pseudomallei MSHR305  
Burkholderia pseudomallei NCTC 13179  
Burkholderia pseudomallei BPC006  
Burkholderia pseudomallei 1026b  
Burkholderia pseudomallei MSHR346  
Burkholderia pseudomallei 668  
Burkholderia pseudomallei 1710b  
Burkholderia pseudomallei K96243  
Burkholderia mallei NCTC 10229  
Burkholderia mallei NCTC 10247  
Burkholderia mallei ATCC 23344  
Burkholderia lata  
Burkholderia ambifaria MC40-6  
Burkholderia cenocepacia MC0-3  
Burkholderia cenocepacia AU 1054  
Burkholderia cenocepacia J2315  
Burkholderia multivorans ATCC 17616  
Burkholderia cepacia GG4  
Polynucleobacter Polynucleobacter necessarius subsp. necessarius STIR1  
Bordetella Bordetella pertussis CS  
Bordetella parapertussis 18323  
Bordetella parapertussis Bpp5  
Bordetella bronchiseptica MO149  
Bordetella bronchiseptica 253  
Achromobacter Achromobacter xylosoxidans NBRC 15126 = ATCC 27061  
Taylorella Taylorella asinigenitalis 14/45  
Taylorella equigenitalis 14/56  
Taylorella equigenitalis ATCC 35865  
Variovorax Variovorax paradoxus B4  
Variovorax paradoxus EPS  
Alicycliphilus Alicycliphilus denitrificans BC  
Nitrosomonas Nitrosomonas sp. AL212  
Betaproteobacteria/Others Candidatus Nasuia deltocephalinicola str. NAS-ALF  
Candidatus Tremblaya phenacola PAVE  
Candidatus Tremblaya princeps PCVAL  
Candidatus Kinetoplastibacterium oncopeltii TCC290E  
Candidatus Kinetoplastibacterium galatii TCC219  
Candidatus Kinetoplastibacterium desouzaii TCC079E  
Kinetoplastibacterium blastocrithidii Candidatus (ex Strigomonas culicis)  
Kinetoplastibacterium blastocrithidii Candidatus TCC012E  
Candidatus Kinetoplastibacterium crithidii (ex Angomonas deanei ATCC 30255)  
Candidatus Kinetoplastibacterium crithidii TCC036E  
Burkholderia phenoliruptrix BR3459a  
Pandoraea pnomenusa 3kgm  
Candidatus Symbiobacter mobilis Comamonadaceae bacterium CR  
Sulfuricella denitrificans skB26  
Epsilonproteobacteria Helicobacter Helicobacter cetorum MIT 99-5656  
Helicobacter pylori BM012S  
Helicobacter pylori BM012A  
Helicobacter pylori SouthAfrica20  
Helicobacter pylori UM298  
Helicobacter pylori UM066  
Helicobacter pylori UM037  
Helicobacter pylori UM299  
Helicobacter pylori UM032  
Helicobacter pylori OK310  
Helicobacter pylori OK113  
Helicobacter pylori Rif2  
Helicobacter pylori Rif1  
Helicobacter pylori HUP-B14  
Helicobacter pylori PeCan18  
Helicobacter pylori Shi169  
Helicobacter pylori Shi112  
Helicobacter pylori Shi417  
Helicobacter pylori XZ274  
Helicobacter pylori Aklavik86  
Helicobacter pylori Aklavik117  
Helicobacter pylori SNT49  
Helicobacter pylori Puno135  
Helicobacter pylori Puno120  
Helicobacter pylori ELS37  
Helicobacter pylori Gambia94/24  
Helicobacter pylori SouthAfrica7  
Helicobacter pylori India7  
Helicobacter pylori Lithuania75  
Helicobacter pylori 2017  
Helicobacter pylori 2018  
Helicobacter pylori 908  
Helicobacter pylori F57  
Helicobacter pylori F30  
Helicobacter pylori F16  
Helicobacter pylori Sat464  
Helicobacter pylori Cuz20  
Helicobacter pylori PeCan4  
Helicobacter pylori SJM180  
Helicobacter pylori B8  
Helicobacter pylori 52  
Helicobacter pylori v225d  
Helicobacter pylori 83  
Helicobacter pylori 35A  
Helicobacter pylori P12  
Helicobacter pylori G27  
Helicobacter pylori Shi470  
Helicobacter pylori HPAG1  
Helicobacter pylori 51  
Helicobacter pylori F32  
Helicobacter pylori J99  
Helicobacter pylori 26695  
Helicobacter pylori 26695  
Campylobacter Campylobacter jejuni Waterborne C.jejuni Outbreak  
Campylobacter jejuni RM1221  
Campylobacter jejuni subsp. jejuni 00-2544  
Campylobacter jejuni subsp. jejuni 00-2538  
Campylobacter jejuni subsp. jejuni 00-2426  
Campylobacter jejuni subsp. jejuni 00-2425  
Campylobacter jejuni subsp. jejuni PT14  
Campylobacter jejuni subsp. jejuni ICDCCJ07001  
Campylobacter jejuni subsp. jejuni S3  
Campylobacter jejuni subsp. jejuni M1  
Campylobacter jejuni subsp. jejuni IA3902  
Campylobacter jejuni subsp. jejuni 81116  
Campylobacter jejuni subsp. jejuni 81-176  
Campylobacter jejuni subsp. jejuni NCTC 11168-BN148  
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819  
Campylobacter coli 76339  
Campylobacter coli 15-537360  
Campylobacter coli CVM N29710  
Arcobacter Arcobacter butzleri 7h1h  
Arcobacter butzleri ED-1  
Deltaproteobacteria Geobacter Geobacter sp. M18  
Geobacter sulfurreducens PCA  
Desulfovibrio Desulfovibrio hydrothermalis AM13 = DSM 14728  
Desulfovibrio vulgaris RCH1  
Desulfovibrio vulgaris str. 'Miyazaki F'  
Desulfovibrio vulgaris str. Hildenborough  
Desulfovibrio gigas DSM 1382 = ATCC 19364  
Desulfovibrio desulfuricans ND132  
Lawsonia Lawsonia intracellularis N343  
Bdellovibrio Bdellovibrio exovorus JSS  
Bdellovibrio bacteriovorus str. Tiberius  
Anaeromyxobacter Anaeromyxobacter sp. K  
Anaeromyxobacter dehalogenans 2CP-C  
Myxococcus Myxococcus stipitatus DSM 14675  
Sorangium Sorangium cellulosum So0157-2  
Alphaproteobacteria Rickettsia Rickettsia bellii RML369-C  
Rickettsia canadensis str. CA410  
Rickettsia typhi str. B9991CWPP  
Rickettsia typhi str. TH1527  
Rickettsia prowazekii str. Breinl  
Rickettsia prowazekii str. NMRC Madrid E  
Rickettsia prowazekii str. RpGvF24  
Rickettsia prowazekii str. GvV257  
Rickettsia prowazekii str. Dachau  
Rickettsia prowazekii str. Katsinyian  
Rickettsia prowazekii str. Chernikova  
Rickettsia prowazekii Rp22  
Rickettsia prowazekii str. Madrid E  
Rickettsia slovaca str. D-CWPP  
Rickettsia massiliae str. AZT80  
Rickettsia rickettsii str. Arizona  
Rickettsia rickettsii str. Brazil  
Rickettsia rickettsii str. Hauke  
Rickettsia rickettsii str. Colombia  
Rickettsia rickettsii str. Hlp#2  
Rickettsia rickettsii str. Hino  
Rickettsia rickettsii str. Iowa  
Orientia Orientia tsutsugamushi str. Ikeda  
Wolbachia Wolbachia endosymbiont of Drosophila melanogaster  
Wolbachia endosymbiont of Onchocerca ochengi str. Adamawa_Cameroon  
Wolbachia endosymbiont strain TRS of Brugia malayi  
Wolbachia endosymbiont of Drosophila simulans wHa  
Wolbachia endosymbiont of Drosophila simulans wNo  
Anaplasma Anaplasma phagocytophilum str. Dog2  
Anaplasma phagocytophilum str. HZ2  
Anaplasma phagocytophilum str. JM  
Anaplasma marginale str. Dawn  
Anaplasma marginale str. Gypsy Plains  
Anaplasma marginale str. St. Maries  
Ehrlichia Ehrlichia muris AS145  
Ehrlichia ruminantium str. Welgevonden  
Ehrlichia ruminantium str. Welgevonden  
Pelagibacter Candidatus Pelagibacter ubique HTCC1062  
Mesorhizobium Mesorhizobium australicum WSM2073  
Sinorhizobium Sinorhizobium fredii USDA 257  
Sinorhizobium fredii HH103  
Sinorhizobium meliloti 2011  
Sinorhizobium meliloti GR4  
Sinorhizobium meliloti Rm41  
Sinorhizobium meliloti SM11  
Sinorhizobium meliloti BL225C  
Sinorhizobium meliloti 1021  
Rhizobium Rhizobium etli CFN 42  
Rhizobium etli bv. mimosae str. Mim1  
Rhizobium tropici CIAT 899  
Rhizobium leguminosarum bv. trifolii WSM2304  
Rhizobium leguminosarum bv. trifolii WSM1325  
Liberibacter Liberibacter crescens BT-1  
Candidatus Liberibacter solanacearum CLso-ZC1  
Candidatus Liberibacter americanus str. Sao Paulo  
Candidatus Liberibacter asiaticus str. gxpsy  
Brucella Brucella ceti TE10759-12  
Brucella ceti TE28753-12  
Brucella canis HSK A52141  
Brucella suis VBI22  
Brucella suis 1330  
Brucella suis 1330  
Brucella melitensis NI  
Brucella melitensis M5-90  
Brucella melitensis M28  
Brucella melitensis bv. 1 str. 16M  
Brucella abortus A13334  
Brucella melitensis biovar Abortus 2308  
Brucella abortus bv. 1 str. 9-941  
Bradyrhizobium Bradyrhizobium sp. S23321  
Bradyrhizobium sp. BTAi1  
Bradyrhizobium oligotrophicum S58  
Bradyrhizobium japonicum USDA 6  
Rhodopseudomonas Rhodopseudomonas palustris DX-1  
Rhodopseudomonas palustris TIE-1  
Rhodopseudomonas palustris HaA2  
Rhodopseudomonas palustris BisB5  
Rhodopseudomonas palustris BisB18  
Rhodopseudomonas palustris CGA009  
Oligotropha Oligotropha carboxidovorans OM5  
Oligotropha carboxidovorans OM5  
Bartonella Bartonella australis Aust/NH1  
Bartonella vinsonii subsp. berkhoffii str. Winnie  
Bartonella quintana RM-11  
Methylobacterium Methylobacterium extorquens DM4  
Methylobacterium extorquens PA1  
Hyphomicrobium Hyphomicrobium nitrativorans NL23  
Hyphomicrobium denitrificans 1NES1  
Caulobacter Caulobacter crescentus CB15  
Rhodobacter Rhodobacter sphaeroides KD131  
Rhodobacter sphaeroides ATCC 17025  
Rhodobacter sphaeroides 2.4.1  
Paracoccus Paracoccus aminophilus JCM 7686  
Zymomonas Zymomonas mobilis subsp. mobilis ATCC 29191  
Zymomonas mobilis subsp. mobilis CP4  
Zymomonas mobilis subsp. mobilis ATCC 10988  
Zymomonas mobilis subsp. mobilis ZM4  
Zymomonas mobilis subsp. pomaceae ATCC 29192  
Gluconobacter Gluconobacter oxydans H24  
Gluconacetobacter Gluconacetobacter diazotrophicus PAl 5  
Acetobacter Acetobacter pasteurianus 386B  
Acetobacter pasteurianus IFO 3283-12  
Acetobacter pasteurianus IFO 3283-01-42C  
Acetobacter pasteurianus IFO 3283-32  
Acetobacter pasteurianus IFO 3283-26  
Acetobacter pasteurianus IFO 3283-22  
Acetobacter pasteurianus IFO 3283-07  
Acetobacter pasteurianus IFO 3283-03  
Rhodospirillum Rhodospirillum rubrum ATCC 11170  
Magnetospirillum Magnetospirillum gryphiswaldense MSR-1 v2  
Unclassified Alphaproteobacter Micavibrio aeruginosavorus EPB  
Alphaproteobacteria/Others Phaeobacter gallaeciensis DSM 17395  
Phaeobacter gallaeciensis DSM 26640  
Leisingera methylohalidivorans DSM 14336  
Octadecabacter antarcticus 307  
Octadecabacter arcticus 238  
Candidatus Endolissoclinum faulkneri L2  
Firmicutes Bacillus Bacillus amyloliquefaciens subsp. plantarum sequencing  
Bacillus amyloliquefaciens subsp. plantarum UCMB5033  
Bacillus amyloliquefaciens subsp. plantarum AS43.3  
Bacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2  
Bacillus amyloliquefaciens subsp. plantarum UCMB5113  
Bacillus amyloliquefaciens subsp. plantarum UCMB5036  
Bacillus amyloliquefaciens subsp. plantarum CAU B946  
Bacillus amyloliquefaciens LFB112  
Bacillus amyloliquefaciens CC178  
Bacillus amyloliquefaciens Y2  
Bacillus amyloliquefaciens IT-45  
Bacillus amyloliquefaciens XH7  
Bacillus amyloliquefaciens LL3  
Bacillus amyloliquefaciens TA208  
Bacillus amyloliquefaciens DSM 7  
Bacillus licheniformis 9945A  
Bacillus subtilis PY79  
Bacillus subtilis XF-1  
Bacillus subtilis QB928  
Bacillus subtilis BSn5  
Bacillus subtilis subsp. subtilis str. BAB-1  
Bacillus subtilis subsp. subtilis str. BSP1  
Bacillus subtilis subsp. subtilis str. RO-NN-1  
Bacillus subtilis subsp. subtilis 6051-HGW  
Bacillus subtilis subsp. spizizenii TU-B-10  
Bacillus subtilis subsp. spizizenii str. W23  
Bacillus subtilis subsp. natto BEST195  
Bacillus licheniformis DSM 13 = ATCC 14580  
Bacillus infantis NRRL B-14911  
Bacillus cereus subsp. cytotoxis NVH 391-98  
Bacillus toyonensis BCT-7112  
Bacillus thuringiensis HD-771  
Bacillus thuringiensis HD-789  
Bacillus thuringiensis MC28  
Bacillus thuringiensis serovar chinensis CT-43  
Bacillus thuringiensis YBT-1518  
Bacillus thuringiensis Bt407  
Bacillus thuringiensis serovar konkukian str. 97-27  
Bacillus thuringiensis serovar kurstaki str. HD73  
Bacillus thuringiensis BMB171  
Bacillus thuringiensis serovar finitimus YBT-020  
Bacillus thuringiensis serovar thuringiensis str. IS5056  
Bacillus cereus FRI-35  
Bacillus cereus biovar anthracis str. CI  
Bacillus cereus AH820  
Bacillus cereus AH187  
Bacillus cereus B4264  
Bacillus cereus G9842  
Bacillus cereus Q1  
Bacillus cereus F837/76  
Bacillus cereus NC7401  
Bacillus cereus E33L  
Bacillus cereus ATCC 14579  
Bacillus cereus ATCC 10987  
Bacillus anthracis str. H9401  
Bacillus anthracis str. CDC 684  
Bacillus anthracis str. 'Ames Ancestor'  
Bacillus anthracis str. Sterne  
Bacillus anthracis str. Ames  
Bacillus anthracis str. A2012  
Bacillus megaterium WSH-002  
Bacillus megaterium QM B1551  
Bacillus coagulans 36D1  
Geobacillus Geobacillus sp. C56-T3  
Geobacillus sp. Y4.1MC1  
Geobacillus sp. Y412MC52  
Geobacillus sp. Y412MC61  
Staphylococcus Staphylococcus aureus subsp. aureus MSHR1132  
Staphylococcus pseudintermedius ED99  
Staphylococcus pasteuri SP1  
Staphylococcus lugdunensis N920143  
Staphylococcus warneri SG1  
Staphylococcus epidermidis ATCC 12228  
Staphylococcus aureus CA-347  
Staphylococcus aureus Bmb9393  
Staphylococcus aureus M1  
Staphylococcus aureus 08BA02176  
Staphylococcus aureus ST228/18412  
Staphylococcus aureus ST228/18341  
Staphylococcus aureus ST228/16125  
Staphylococcus aureus ST228/16035  
Staphylococcus aureus ST228/15532  
Staphylococcus aureus ST228/10497  
Staphylococcus aureus ST228/10388  
Staphylococcus aureus 04-02981  
Staphylococcus aureus RF122  
Staphylococcus aureus subsp. aureus Z172  
Staphylococcus aureus subsp. aureus 6850  
Staphylococcus aureus subsp. aureus SA957  
Staphylococcus aureus subsp. aureus CN1  
Staphylococcus aureus subsp. aureus SA40  
Staphylococcus aureus subsp. aureus 11819-97  
Staphylococcus aureus subsp. aureus M013  
Staphylococcus aureus subsp. aureus HO 5096 0412  
Staphylococcus aureus subsp. aureus VC40  
Staphylococcus aureus subsp. aureus T0131  
Staphylococcus aureus subsp. aureus LGA251  
Staphylococcus aureus subsp. aureus ECT-R 2  
Staphylococcus aureus subsp. aureus JKD6159  
Staphylococcus aureus subsp. aureus ED133  
Staphylococcus aureus subsp. aureus ED98  
Staphylococcus aureus subsp. aureus TW20  
Staphylococcus aureus subsp. aureus 55/2053  
Staphylococcus aureus subsp. aureus TCH60  
Staphylococcus aureus subsp. aureus str. JKD6008  
Staphylococcus aureus subsp. aureus 71193  
Staphylococcus aureus subsp. aureus S0385  
Staphylococcus aureus subsp. aureus str. Newman  
Staphylococcus aureus subsp. aureus Mu3  
Staphylococcus aureus subsp. aureus USA300_TCH1516  
Staphylococcus aureus subsp. aureus USA300_FPR3757  
Staphylococcus aureus subsp. aureus JH9  
Staphylococcus aureus subsp. aureus MSSA476  
Staphylococcus aureus subsp. aureus MRSA252  
Staphylococcus aureus subsp. aureus MW2  
Staphylococcus aureus subsp. aureus N315  
Staphylococcus aureus subsp. aureus Mu50  
Staphylococcus aureus subsp. aureus COL  
Staphylococcus aureus subsp. aureus NCTC 8325  
Listeria Listeria monocytogenes EGD sequence  
Listeria monocytogenes N53-1  
Listeria monocytogenes La111  
Listeria monocytogenes serotype 4b str. LL195  
Listeria monocytogenes 07PF0776  
Listeria monocytogenes M7  
Listeria monocytogenes J1-220  
Listeria monocytogenes J1816  
Listeria monocytogenes SLCC2376  
Listeria monocytogenes SLCC5850  
Listeria monocytogenes ATCC 19117  
Listeria monocytogenes L312  
Listeria monocytogenes SLCC2479  
Listeria monocytogenes SLCC7179  
Listeria monocytogenes SLCC2540  
Listeria monocytogenes SLCC2378  
Listeria monocytogenes serotype 1/2b str. SLCC2755  
Listeria monocytogenes serotype 1/2c str. SLCC2372  
Listeria monocytogenes serotype 7 str. SLCC2482  
Listeria monocytogenes 08-5578  
Listeria monocytogenes 08-5923  
Listeria monocytogenes L99  
Listeria monocytogenes HCC23  
Listeria monocytogenes 10403S  
Listeria monocytogenes J0161  
Listeria monocytogenes Finland 1998  
Listeria monocytogenes FSL R2-561  
Listeria monocytogenes serotype 4b str. F2365  
Listeria monocytogenes EGD-e  
Exiguobacterium Exiguobacterium antarcticum B7  
Paenibacillus Paenibacillus sp. Y412MC10  
Paenibacillus mucilaginosus KNP414  
Paenibacillus mucilaginosus K02  
Paenibacillus larvae subsp. larvae DSM 25430  
Paenibacillus polymyxa CR1  
Paenibacillus polymyxa SC2  
Paenibacillus polymyxa E681  
Alicyclobacillus Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1  
Lactococcus Lactococcus garvieae Lg2  
Lactococcus lactis subsp. lactis KLDS 4.0325  
Lactococcus lactis subsp. lactis IO-1  
Lactococcus lactis subsp. lactis CV56  
Lactococcus lactis subsp. lactis KF147  
Lactococcus lactis subsp. lactis Il1403  
Lactococcus lactis subsp. cremoris KW2  
Lactococcus lactis subsp. cremoris UC509.9  
Lactococcus lactis subsp. cremoris A76  
Lactococcus lactis subsp. cremoris NZ9000  
Lactococcus lactis subsp. cremoris SK11  
Streptococcus Streptococcus constellatus subsp. pharyngis C1050  
Streptococcus constellatus subsp. pharyngis C818  
Streptococcus constellatus subsp. pharyngis C232  
Streptococcus intermedius B196  
Streptococcus intermedius C270  
Streptococcus anginosus C238  
Streptococcus anginosus C1051  
Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069  
Streptococcus gallolyticus subsp. gallolyticus ATCC 43143  
Streptococcus lutetiensis 033  
Streptococcus equi subsp. zooepidemicus ATCC 35246  
Streptococcus equi subsp. zooepidemicus MGCS10565  
Streptococcus equi subsp. zooepidemicus  
Streptococcus dysgalactiae subsp. equisimilis 167  
Streptococcus dysgalactiae subsp. equisimilis AC-2713  
Streptococcus dysgalactiae subsp. equisimilis ATCC 12394  
Streptococcus dysgalactiae subsp. equisimilis RE378  
Streptococcus oligofermentans AS 1.3089  
Streptococcus iniae SF1  
Streptococcus parasanguinis FW213  
Streptococcus pyogenes HSC5  
Streptococcus pyogenes A20  
Streptococcus pyogenes MGAS1882  
Streptococcus pyogenes MGAS15252  
Streptococcus pyogenes Alab49  
Streptococcus pyogenes MGAS10750  
Streptococcus pyogenes MGAS10270  
Streptococcus pyogenes MGAS2096  
Streptococcus pyogenes MGAS9429  
Streptococcus pyogenes MGAS6180  
Streptococcus pyogenes NZ131  
Streptococcus pyogenes MGAS8232  
Streptococcus pyogenes MGAS10394  
Streptococcus pyogenes MGAS315  
Streptococcus pyogenes SSI-1  
Streptococcus pyogenes M1 476  
Streptococcus pyogenes MGAS5005  
Streptococcus pyogenes M1 GAS  
Streptococcus pneumoniae A026  
Streptococcus pneumoniae ST556  
Streptococcus pneumoniae SPNA45  
Streptococcus pneumoniae SPN994039  
Streptococcus pneumoniae SPN994038  
Streptococcus pneumoniae SPN034183  
Streptococcus pneumoniae SPN034156  
Streptococcus pneumoniae INV104  
Streptococcus pneumoniae INV200  
Streptococcus pneumoniae OXC141  
Streptococcus pneumoniae gamPNI0373  
Streptococcus pneumoniae AP200  
Streptococcus pneumoniae ATCC 700669  
Streptococcus pneumoniae TCH8431/19A  
Streptococcus pneumoniae CGSP14  
Streptococcus pneumoniae G54  
Streptococcus pneumoniae JJA  
Streptococcus pneumoniae 70585  
Streptococcus pneumoniae Hungary19A-6  
Streptococcus pneumoniae Taiwan19F-14  
Streptococcus pneumoniae D39  
Streptococcus pneumoniae 670-6B  
Streptococcus pneumoniae R6  
Streptococcus pneumoniae TIGR4  
Streptococcus agalactiae ILRI112  
Streptococcus agalactiae ILRI005  
Streptococcus agalactiae 09mas018883  
Streptococcus agalactiae 2-22  
Streptococcus agalactiae SA20-06  
Streptococcus agalactiae GD201008-001  
Streptococcus agalactiae NEM316  
Streptococcus agalactiae 2603V/R  
Streptococcus mutans GS-5  
Streptococcus mutans LJ23  
Streptococcus mutans UA159  
Streptococcus thermophilus MN-ZLW-002  
Streptococcus thermophilus JIM 8232  
Streptococcus thermophilus ND03  
Streptococcus thermophilus CNRZ1066  
Streptococcus thermophilus LMG 18311  
Streptococcus suis T15  
Streptococcus suis TL13  
Streptococcus suis SC070731  
Streptococcus suis S735  
Streptococcus suis ST3  
Streptococcus suis D9  
Streptococcus suis SS12  
Streptococcus suis D12  
Streptococcus suis ST1  
Streptococcus suis A7  
Streptococcus suis JS14  
Streptococcus suis BM407  
Streptococcus suis SC84  
Streptococcus suis GZ1  
Streptococcus suis 98HAH33  
Streptococcus suis 05ZYH33  
Streptococcus salivarius CCHSS3  
Streptococcus salivarius JIM8777  
Lactobacillus Lactobacillus paracasei subsp. paracasei 8700:2  
Lactobacillus casei LOCK919  
Lactobacillus casei W56  
Lactobacillus casei LC2W  
Lactobacillus casei BD-II  
Lactobacillus casei BL23  
Lactobacillus casei str. Zhang  
Lactobacillus rhamnosus LOCK908  
Lactobacillus rhamnosus LOCK900  
Lactobacillus rhamnosus ATCC 8530  
Lactobacillus rhamnosus GG  
Lactobacillus rhamnosus GG  
Lactobacillus johnsonii N6.2  
Lactobacillus johnsonii DPC 6026  
Lactobacillus johnsonii NCC 533  
Lactobacillus salivarius UCC118  
Lactobacillus fermentum F-6  
Lactobacillus fermentum CECT 5716  
Lactobacillus amylovorus GRL 1112  
Lactobacillus reuteri TD1  
Lactobacillus reuteri I5007  
Lactobacillus reuteri JCM 1112  
Lactobacillus reuteri SD2112  
Lactobacillus plantarum 16  
Lactobacillus plantarum ZJ316  
Lactobacillus plantarum subsp. plantarum ST-III  
Lactobacillus plantarum subsp. plantarum P-8  
Lactobacillus plantarum WCFS1  
Lactobacillus helveticus R0052  
Lactobacillus helveticus H10  
Lactobacillus helveticus CNRZ32  
Lactobacillus delbrueckii subsp. bulgaricus ND02  
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842  
Lactobacillus delbrueckii subsp. bulgaricus 2038  
Lactobacillus brevis KB290  
Lactobacillus acidophilus La-14  
Lactobacillus acidophilus NCFM  
Pediococcus Pediococcus pentosaceus SL4  
Enterococcus Enterococcus mundtii QU 25  
Enterococcus casseliflavus EC20  
Enterococcus faecium Aus0085  
Enterococcus faecium NRRL B-2354  
Enterococcus faecium DO  
Enterococcus faecalis str. Symbioflor 1  
Enterococcus faecalis D32  
Enterococcus faecalis OG1RF  
Enterococcus faecalis V583  
Melissococcus Melissococcus plutonius ATCC 35311  
Leuconostoc Leuconostoc carnosum JB16  
Leuconostoc mesenteroides subsp. mesenteroides J18  
Leuconostoc gelidum JB7  
Carnobacterium Carnobacterium maltaromaticum LMA28  
Clostridium Clostridium sp. SY8519  
Clostridium saccharobutylicum DSM 13864  
Clostridium autoethanogenum DSM 10061  
Clostridium saccharoperbutylacetonicum N1-4(HMT)  
Clostridium kluyveri NBRC 12016  
Clostridium tetani genome 12124569  
Clostridium perfringens SM101  
Clostridium perfringens str. 13  
Clostridium pasteurianum BC1  
Clostridium botulinum H04402 065  
Clostridium botulinum BKT015925  
Clostridium botulinum F str. 230613  
Clostridium botulinum F str. Langeland  
Clostridium botulinum E3 str. Alaska E43  
Clostridium botulinum B1 str. Okra  
Clostridium botulinum Ba4 str. 657  
Clostridium botulinum A2 str. Kyoto  
Clostridium botulinum A3 str. Loch Maree  
Clostridium botulinum A str. Hall  
Clostridium botulinum A str. ATCC 19397  
Clostridium acetobutylicum DSM 1731  
Clostridium acetobutylicum EA 2018  
Desulfitobacterium Desulfitobacterium dichloroeliminans LMG P-21439  
Desulfitobacterium hafniense DCB-2  
Desulfotomaculum Desulfotomaculum gibsoniae DSM 7213  
Ruminococcus Ruminococcus champanellensis 18P13  
Unclassified Clostridiales Clostridium acidurici 9a  
Thermoanaerobacter Thermoanaerobacter sp. X513  
Thermoanaerobacterium Thermoanaerobacterium saccharolyticum JW/SL-YS485  
Thermoanaerobacterium thermosaccharolyticum M0795  
Firmicutes/Others [Eubacterium] cylindroides [Eubacterium] cylindroides T2-87  
Erysipelothrix rhusiopathiae SY1027  
Eubacterium siraeum V10Sc8a  
Clostridium thermocellum DSM 1313  
[Clostridium] stercorarium Clostridiu subsp. stercorarium DSM 8532  
Faecalibacterium prausnitzii L2-6  
Sulfobacillus acidophilus TPY  
Desulfosporosinus meridiei DSM 13257  
Clostridium difficile BI1  
Clostridium difficile R20291  
Clostridium difficile CD196  
Clostridium saccharolyticum Clostridium cf. saccharolyticum K10  
Coprococcus catus GD/7  
Roseburia intestinalis XB6B4  
Candidatus Arthromitus sp. SFB-rat-Yit  
Candidatus Arthromitus sp. SFB-mouse-Yit  
Thermacetogenium phaeum DSM 12270  
Halobacteroides halobius DSM 5150  
Thermobacillus composti KWC4  
Amphibacillus xylanus NBRC 15112  
Tenericutes Mycoplasma Mycoplasma parvum str. Indiana  
Mycoplasma leachii PG50  
Mycoplasma mycoides subsp. mycoides SC str. Gladysdale  
Mycoplasma mycoides subsp. mycoides SC str. PG1  
Candidatus Mycoplasma haemominutum 'Birmingham 1'  
Mycoplasma ovis str. Michigan  
Mycoplasma cynos C142  
Candidatus Mycoplasma haemolamae str. Purdue  
Mycoplasma suis str. Illinois  
Mycoplasma haemofelis str. Langford 1  
Mycoplasma bovis Hubei-1  
Mycoplasma bovis PG45  
Mycoplasma putrefaciens Mput9231  
Mycoplasma fermentans JER  
Mycoplasma fermentans PG18  
Mycoplasma agalactiae  
Mycoplasma pneumoniae M129-B7  
Mycoplasma pneumoniae FH  
Mycoplasma pneumoniae M129  
Mycoplasma hyorhinis SK76  
Mycoplasma hyorhinis MCLD  
Mycoplasma hyorhinis HUB-1  
Mycoplasma hyorhinis DBS 1050  
Mycoplasma hyopneumoniae 168-L  
Mycoplasma hyopneumoniae 7422  
Mycoplasma hyopneumoniae 232  
Mycoplasma hyopneumoniae 7448  
Mycoplasma hyopneumoniae J  
Mycoplasma genitalium M2321  
Mycoplasma genitalium M2288  
Mycoplasma genitalium M6282  
Mycoplasma genitalium M6320  
Mycoplasma gallisepticum NC08_2008.031-4-3P  
Mycoplasma gallisepticum CA06_2006.052-5-2P  
Mycoplasma gallisepticum NC06_2006.080-5-2P  
Mycoplasma gallisepticum WI01_2001.043-13-2P  
Mycoplasma gallisepticum NY01_2001.047-5-1P  
Mycoplasma gallisepticum NC96_1596-4-2P  
Mycoplasma gallisepticum NC95_13295-2-2P  
Mycoplasma gallisepticum VA94_7994-1-7P  
Mycoplasma gallisepticum S6  
Mycoplasma gallisepticum str. R(high)  
Mycoplasma gallisepticum str. R(low)  
Ureaplasma Ureaplasma parvum serovar 3 str. ATCC 700970  
Phytoplasma Candidatus Phytoplasma solani tobfin_28409  
Candidatus Phytoplasma australiense Strawberry lethal yellows phytoplasma (CPA) str. NZSb11  
Candidatus Phytoplasma australiense  
Mesoplasma Mesoplasma florum W37  
Tenericutes/Others Spiroplasma syrphidicola EA-1  
Spiroplasma diminutum CUAS-1  
Spiroplasma chrysopicola DF-1  
Spiroplasma taiwanense CT-1  
Spiroplasma apis B31  
Actinobacteria Mycobacterium Mycobacterium sp. MOTT36Y  
Mycobacterium sp. JDM601  
Mycobacterium abscessus subsp. bolletii 50594  
Mycobacterium liflandii 128FXT  
Mycobacterium sp. KMS  
Mycobacterium sp. MCS  
Mycobacterium yongonense 05-1390  
Mycobacterium intracellulare MOTT-64  
Mycobacterium indicus pranii MTCC 9506  
Mycobacterium intracellulare MOTT-02  
Mycobacterium avium subsp. paratuberculosis MAP4  
Mycobacterium avium subsp. paratuberculosis K-10  
Mycobacterium canettii CIPT 140070017  
Mycobacterium canettii CIPT 140060008  
Mycobacterium canettii CIPT 140070008  
Mycobacterium canettii CIPT 140070010  
Mycobacterium tuberculosis EAI5/NITR206  
Mycobacterium tuberculosis EAI5  
Mycobacterium tuberculosis CAS/NITR204  
Mycobacterium tuberculosis str. Beijing/NITR203  
Mycobacterium tuberculosis UT205  
Mycobacterium tuberculosis RGTB423  
Mycobacterium tuberculosis RGTB327  
Mycobacterium tuberculosis CTRI-2  
Mycobacterium tuberculosis str. Erdman = ATCC 35801  
Mycobacterium tuberculosis KZN 605  
Mycobacterium tuberculosis KZN 4207  
Mycobacterium tuberculosis CCDC5180  
Mycobacterium tuberculosis CCDC5079  
Mycobacterium tuberculosis CCDC5079  
Mycobacterium tuberculosis H37Ra  
Mycobacterium tuberculosis str. Haarlem/NITR202  
Mycobacterium tuberculosis str. Haarlem  
Mycobacterium tuberculosis F11  
Mycobacterium tuberculosis H37Rv  
Mycobacterium tuberculosis CDC1551  
Mycobacterium bovis AF2122/97  
Mycobacterium bovis BCG str. Korea 1168P  
Mycobacterium bovis BCG str. Mexico  
Mycobacterium bovis BCG str. Tokyo 172  
Mycobacterium gilvum Spyr1  
Mycobacterium smegmatis str. MC2 155  
Mycobacterium leprae TN  
Mycobacterium kansasii ATCC 12478  
Corynebacterium Corynebacterium maris DSM 45190  
Corynebacterium halotolerans YIM 70093 = DSM 44683  
Corynebacterium terpenotabidum Y-11  
Corynebacterium ulcerans BR-AD22  
Corynebacterium ulcerans 809  
Corynebacterium urealyticum DSM 7111  
Corynebacterium argentoratense DSM 44202  
Corynebacterium callunae DSM 20147  
Corynebacterium pseudotuberculosis 258  
Corynebacterium pseudotuberculosis Cp162  
Corynebacterium pseudotuberculosis P54B96  
Corynebacterium pseudotuberculosis 267  
Corynebacterium pseudotuberculosis 1/06-A  
Corynebacterium pseudotuberculosis 42/02-A  
Corynebacterium pseudotuberculosis 3/99-5  
Corynebacterium pseudotuberculosis 31  
Corynebacterium pseudotuberculosis CIP 52.97  
Corynebacterium pseudotuberculosis PAT10  
Corynebacterium pseudotuberculosis I19  
Corynebacterium pseudotuberculosis FRC41  
Corynebacterium pseudotuberculosis C231  
Corynebacterium pseudotuberculosis 1002  
Corynebacterium glutamicum MB001  
Corynebacterium glutamicum SCgG2  
Corynebacterium glutamicum SCgG1  
Corynebacterium glutamicum ATCC 13032  
Corynebacterium glutamicum ATCC 13032  
Corynebacterium glutamicum ATCC 13032  
Corynebacterium diphtheriae BH8  
Corynebacterium diphtheriae INCA 402  
Corynebacterium diphtheriae VA01  
Corynebacterium diphtheriae HC04  
Corynebacterium diphtheriae HC03  
Corynebacterium diphtheriae HC02  
Corynebacterium diphtheriae HC01  
Corynebacterium diphtheriae 241  
Corynebacterium diphtheriae CDCE 8392  
Corynebacterium diphtheriae PW8  
Corynebacterium diphtheriae C7 (beta)  
Corynebacterium diphtheriae 31A  
Nocardia Nocardia brasiliensis ATCC 700358  
Rhodococcus Rhodococcus pyridinivorans SB3094  
Rhodococcus erythropolis CCM2595  
Streptomyces Streptomyces albus J1074  
Streptomyces rapamycinicus NRRL 5491  
Streptomyces davawensis JCM 4913  
Streptomyces fulvissimus DSM 40593  
Streptomyces venezuelae ATCC 10712  
Streptomyces collinus Tu 365  
Streptomyces cattleya NRRL 8057 = DSM 46488  
Streptomyces hygroscopicus subsp. jinggangensis TL01  
Tropheryma Tropheryma whipplei str. Twist  
Leifsonia Leifsonia xyli subsp. cynodontis DSM 46306  
Clavibacter Clavibacter michiganensis subsp. sepedonicus  
Clavibacter michiganensis subsp. nebraskensis NCPPB 2581  
Nocardiopsis Nocardiopsis alba ATCC BAA-2165  
Frankia Frankia sp. EuI1c  
Frankia sp. CcI3  
Amycolatopsis Amycolatopsis mediterranei RB  
Amycolatopsis mediterranei S699  
Amycolatopsis mediterranei S699  
Amycolatopsis orientalis HCCB10007  
Bifidobacterium Bifidobacterium longum NCC2705  
Bifidobacterium longum DJO10A  
Bifidobacterium longum subsp. infantis 157F  
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222  
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222  
Bifidobacterium longum subsp. longum KACC 91563  
Bifidobacterium longum subsp. longum BBMN68  
Bifidobacterium longum subsp. longum F8  
Bifidobacterium longum subsp. longum JCM 1217  
Bifidobacterium thermophilum RBL67  
Bifidobacterium animalis subsp. animalis ATCC 25527  
Bifidobacterium animalis subsp. lactis Bl12  
Bifidobacterium animalis subsp. lactis B420  
Bifidobacterium animalis subsp. lactis ATCC 27673  
Bifidobacterium animalis subsp. lactis BLC1  
Bifidobacterium animalis subsp. lactis CNCM I-2494  
Bifidobacterium animalis subsp. lactis Bi-07  
Bifidobacterium animalis subsp. lactis V9  
Bifidobacterium animalis subsp. lactis DSM 10140  
Bifidobacterium animalis subsp. lactis BB-12  
Bifidobacterium animalis subsp. lactis AD011  
Bifidobacterium breve UCC2003  
Bifidobacterium asteroides PRL2011  
Bifidobacterium bifidum PRL2010  
Bifidobacterium bifidum BGN4  
Gardnerella Gardnerella vaginalis HMP9231  
Gardnerella vaginalis ATCC 14019  
Actinobacteria/Others Saccharothrix espanaensis DSM 44229  
Propionibacterium avidum 44067  
Propionibacterium acnes ATCC 11828  
Propionibacterium acnes TypeIA2 P.acn31  
Propionibacterium acnes TypeIA2 P.acn17  
Propionibacterium acnes TypeIA2 P.acn33  
Propionibacterium acnes C1  
Propionibacterium acnes HL096PA1  
Propionibacterium acnes 6609  
Propionibacterium acnes 266  
Propionibacterium acnes KPA171202  
Propionibacterium acidipropionici ATCC 4875  
Actinoplanes friuliensis DSM 7358  
Actinomyces graevenitzii C83  
Actinomyces odontolyticus ATCC 17982  
Actinomyces viscosus C505  
Chlamydiae Chlamydia Chlamydia pecorum P787  
Chlamydia pecorum W73  
Chlamydia pecorum PV3056/3  
Chlamydophila pneumoniae LPCoLN  
Chlamydophila pneumoniae J138  
Chlamydophila pneumoniae CWL029  
Chlamydophila pneumoniae AR39  
Chlamydia psittaci 01DC12  
Chlamydia psittaci WC  
Chlamydia psittaci M56  
Chlamydia psittaci WS/RT/E30  
Chlamydia psittaci VS225  
Chlamydia psittaci MN  
Chlamydia psittaci GR9  
Chlamydia psittaci 84/55  
Chlamydia psittaci 08DC60  
Chlamydia psittaci 02DC15  
Chlamydia psittaci C19/98  
Chlamydia psittaci NJ1  
Chlamydia psittaci CP3  
Chlamydophila psittaci RD1  
Chlamydia psittaci Mat116  
Chlamydophila psittaci 6BC  
Chlamydophila psittaci 6BC  
Chlamydia trachomatis C/TW-3  
Chlamydia trachomatis L2/434/Bu(f)  
Chlamydia trachomatis L2/434/Bu(i)  
Chlamydia trachomatis IU888  
Chlamydia trachomatis IU824  
Chlamydia trachomatis L2b/Canada2  
Chlamydia trachomatis L2b/Canada1  
Chlamydia trachomatis L3/404/LN  
Chlamydia trachomatis L2b/Ams5  
Chlamydia trachomatis L2b/Ams4  
Chlamydia trachomatis L2b/Ams3  
Chlamydia trachomatis L2b/Ams2  
Chlamydia trachomatis L2b/Ams1  
Chlamydia trachomatis L2b/795  
Chlamydia trachomatis L2b/CV204  
Chlamydia trachomatis L2b/LST  
Chlamydia trachomatis L2b/UCH-2  
Chlamydia trachomatis L2b/8200/07  
Chlamydia trachomatis L2/25667R  
Chlamydia trachomatis L1/224  
Chlamydia trachomatis L1/115  
Chlamydia trachomatis L1/440/LN  
Chlamydia trachomatis K/SotonK1  
Chlamydia trachomatis Ia/SotonIa3  
Chlamydia trachomatis Ia/SotonIa1  
Chlamydia trachomatis G/SotonG1  
Chlamydia trachomatis F/SotonF3  
Chlamydia trachomatis F/SW5  
Chlamydia trachomatis F/SW4  
Chlamydia trachomatis E/SotonE8  
Chlamydia trachomatis E/SotonE4  
Chlamydia trachomatis E/SW3  
Chlamydia trachomatis D/SotonD6  
Chlamydia trachomatis D/SotonD5  
Chlamydia trachomatis D/SotonD1  
Chlamydia trachomatis A/5291  
Chlamydia trachomatis A/363  
Chlamydia trachomatis RC-J/971  
Chlamydia trachomatis RC-L2/55  
Chlamydia trachomatis J/6276tet1  
Chlamydia trachomatis RC-J/966  
Chlamydia trachomatis RC-J(s)/122  
Chlamydia trachomatis RC-F(s)/342  
Chlamydia trachomatis RC-L2(s)/3  
Chlamydia trachomatis RC-J/953  
Chlamydia trachomatis RC-J943  
Chlamydia trachomatis RC-Fs852  
Chlamydia trachomatis RC-L2s46  
Chlamydia trachomatis RC-F69  
Chlamydia trachomatis L2c  
Chlamydia trachomatis D-LC  
Chlamydia trachomatis D-EC  
Chlamydia trachomatis G/9301  
Chlamydia trachomatis G/11074  
Chlamydia trachomatis G/11222  
Chlamydia trachomatis G/9768  
Chlamydia trachomatis E/150  
Chlamydia trachomatis E/11023  
Chlamydia trachomatis B/TZ1A828/OT  
Chlamydia trachomatis Sweden2  
Chlamydia trachomatis E/Bour  
Chlamydia trachomatis A2497  
Chlamydia trachomatis A2497  
Chlamydia trachomatis L2b/UCH-1/proctitis  
Chlamydia trachomatis 434/Bu  
Chlamydia trachomatis A/HAR-13  
Chlamydia trachomatis D/UW-3/CX  
Spirochaetes Borrelia Borrelia miyamotoi LB-2001  
Treponema Treponema pedis str. T A4  
Treponema pallidum str. Fribourg-Blanc  
Treponema pallidum subsp. pertenue str. Gauthier  
Treponema pallidum subsp. pertenue str. CDC2  
Treponema pallidum subsp. pertenue str. SamoaD  
Treponema pallidum subsp. pallidum str. Mexico A  
Treponema pallidum subsp. pallidum str. Chicago  
Treponema pallidum subsp. pallidum DAL-1  
Treponema pallidum subsp. pallidum str. Nichols  
Spirochaeta Spirochaeta thermophila DSM 6578  
Leptospira Leptospira borgpetersenii serovar Hardjo-bovis str. JB197  
Leptospira interrogans serovar Lai str. 56601  
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130  
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'  
Brachyspira Brachyspira pilosicoli WesB  
Brachyspira pilosicoli B2904  
Brachyspira pilosicoli P43/6/78  
Spirochaetes/Others Borrelia valaisiana VS116  
Borrelia garinii NMJW1  
Borrelia garinii BgVir  
Borrelia afzelii HLJ01  
Borrelia afzelii PKo  
Borrelia burgdorferi CA382  
Borrelia burgdorferi JD1  
Borrelia burgdorferi N40  
Borrelia burgdorferi ZS7  
Bacteroidetes Bacteroides Bacteroides xylanisolvens XB1A  
Bacteroides fragilis 638R  
Bacteroides fragilis NCTC 9343  
Porphyromonas Porphyromonas gingivalis TDC60  
Porphyromonas gingivalis W83  
Prevotella Prevotella sp. oral taxon 299 str. F0039  
Prevotella dentalis DSM 3688  
Salinibacter Salinibacter ruber DSM 13855  
Rhodothermus Rhodothermus marinus SG0.5JP17-172  
Riemerella Riemerella anatipestifer RA-CH-2  
Riemerella anatipestifer RA-CH-1  
Riemerella anatipestifer RA-GD  
Riemerella anatipestifer ATCC 11845 = DSM 15868  
Sulcia Candidatus Sulcia muelleri str. Sulcia-ALF  
Candidatus Sulcia muelleri CARI  
Candidatus Sulcia muelleri GWSS  
Blattabacterium Blattabacterium sp. (Panesthia angustipennis spadica) Blattabacterium sp. (Panesthia angustipennis spadica) str. BPAA  
Blattabacterium sp. (Blaberus giganteus)  
Blattabacterium sp. (Blatta orientalis) Blattabacterium sp. (Blatta orientalis) str. Tarazona  
Blattabacterium sp. (Periplaneta americana) str. BPLAN  
Blattabacterium sp. (Cryptocercus punctulatus) str. Cpu  
Blattabacterium sp. (Mastotermes darwiniensis) str. MADAR  
Bacteroidetes/Others Echinicola vietnamensis DSM 17526  
Emticicia oligotrophica DSM 17448  
Alistipes shahii WAL 8301  
Candidatus Uzinura diaspidicola str. ASNER  
Nonlabens dokdonensis DSW-6  
Psychroflexus torquis ATCC 700755  
Fibrobacteres Fibrobacter Fibrobacter succinogenes subsp. succinogenes S85  
Fusobacteria Fusobacterium Fusobacterium nucleatum subsp. vincentii 3_1_36A2  
Fusobacterium nucleatum subsp. animalis 4_8  
Fusobacterium nucleatum subsp. polymorphum ATCC 10953  
Planctomycetes Planctomycetes/Others Singulisphaera acidiphila DSM 18658  
Cyanobacteria Synechocystis Synechocystis sp. PCC 6803 substr. PCC-P  
Synechocystis sp. PCC 6803 substr. PCC-N  
Synechocystis sp. PCC 6803 substr. GT-I  
Synechocystis sp. PCC 6803  
Synechococcus Synechococcus sp. JA-2-3B'a(2-13)  
Synechococcus sp. JA-3-3Ab  
Synechococcus sp. CC9902  
Synechococcus sp. RCC307  
Synechococcus sp. CC9605