dcGO - A comprehensive domain-centric ontology resource for post-genomic research on functions, phenotypes, diseases and more   
  
  

IF2B-like family

Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Alpha and beta proteins (a/b) [ 51349] (147)
Fold:   NagB/RpiA/CoA transferase-like [ 100949]
Superfamily:   NagB/RpiA/CoA transferase-like [ 100950] (8)
Family:   IF2B-like [ 110513] (5)

HP

Human Phenotype (HP)

HP term FDR (all) SDHP (four levels) Annotation (direct or inherited)
Mode of Inheritance (MI)Autosomal recessive inheritance0--Direct
 
HP term FDR (all) SDHP (four levels) Annotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of female internal genitalia0--Direct
Phenotypic Abnormality (PA)Abnormality of the genital system0--Direct
Phenotypic Abnormality (PA)Amenorrhea0--Direct
Phenotypic Abnormality (PA)Abnormality of head or neck0--Direct
Phenotypic Abnormality (PA)Abnormality of the head0--Direct
Phenotypic Abnormality (PA)Abnormality of vision0--Direct
Phenotypic Abnormality (PA)Abnormality of the optic nerve0--Direct
Phenotypic Abnormality (PA)Blindness0--Direct
Phenotypic Abnormality (PA)Optic atrophy0--Direct
Phenotypic Abnormality (PA)Abnormality of the nervous system0--Direct
Phenotypic Abnormality (PA)Delusions0--Direct
Phenotypic Abnormality (PA)Personality changes0--Direct
Phenotypic Abnormality (PA)Abnormal internal genitalia0--Direct
Phenotypic Abnormality (PA)Menstrual irregularities0--Direct
Phenotypic Abnormality (PA)Secondary amenorrhea0--Direct
Phenotypic Abnormality (PA)Abnormality of the skeletal system0--Direct
Phenotypic Abnormality (PA)Abnormal skull morphology0--Direct
Phenotypic Abnormality (PA)Lethargy0--Direct
Phenotypic Abnormality (PA)Spasticity0--Direct
Phenotypic Abnormality (PA)Morphological abnormality of the central nervous system0--Direct
Phenotypic Abnormality (PA)Gliosis0--Direct
Phenotypic Abnormality (PA)Unsteady gait0--Direct
Phenotypic Abnormality (PA)Leukoencephalopathy0--Direct
Phenotypic Abnormality (PA)Upper motor neuron dysfunction0--Direct
Phenotypic Abnormality (PA)CNS hypomyelination0--Direct
Phenotypic Abnormality (PA)Abnormal muscle tone0--Direct
Phenotypic Abnormality (PA)Abnormal posterior eye segment morphology0--Direct
Phenotypic Abnormality (PA)Abnormality of temperature regulation0--Direct
Phenotypic Abnormality (PA)Cessation of head growth0--Direct
Phenotypic Abnormality (PA)Postnatal microcephaly0--Direct
Phenotypic Abnormality (PA)Cerebral hypomyelination0--Direct
Phenotypic Abnormality (PA)CNS demyelination0--Direct
Phenotypic Abnormality (PA)Aplasia/Hypoplasia of the cerebrum0--Direct
Phenotypic Abnormality (PA)Primary gonadal insufficiency0--Direct
Phenotypic Abnormality (PA)Premature ovarian insufficiency0--Direct
Phenotypic Abnormality (PA)Puberty and gonadal disorders0--Direct
Phenotypic Abnormality (PA)Abnormal axial skeleton morphology0--Direct
Phenotypic Abnormality (PA)Abnormality of the female genitalia0--Direct
Phenotypic Abnormality (PA)Abnormal muscle physiology0--Direct
Phenotypic Abnormality (PA)Abnormal eye morphology0--Direct
Phenotypic Abnormality (PA)Abnormality of brain morphology0--Direct
Phenotypic Abnormality (PA)Abnormal myelination0--Direct
Phenotypic Abnormality (PA)Neurodevelopmental abnormality0--Direct
Phenotypic Abnormality (PA)Abnormal ovarian physiology0--Direct
Phenotypic Abnormality (PA)Abnormal circulating progesterone level0--Direct
Phenotypic Abnormality (PA)Increased head circumference0--Direct
Phenotypic Abnormality (PA)Decreased head circumference0--Direct
Phenotypic Abnormality (PA)Cognitive impairment0--Direct
Phenotypic Abnormality (PA)Abnormality of forebrain morphology0--Direct
Phenotypic Abnormality (PA)Abnormality of the glial cells0--Direct
Phenotypic Abnormality (PA)Abnormality of the genitourinary system0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the eye0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of metabolism/homeostasis0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the musculature0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of skeletal morphology0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of nervous system physiology0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of nervous system morphology0Least InformativeDirect
Phenotypic Abnormality (PA)Abnormality of skull size0Moderately InformativeDirect
Phenotypic Abnormality (PA)Behavioral abnormality0Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the endocrine system0Moderately InformativeDirect
Phenotypic Abnormality (PA)Muscular hypotonia0Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the cerebrum0Moderately InformativeDirect
Phenotypic Abnormality (PA)Aplasia/Hypoplasia involving the central nervous system0Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormality of central motor function0Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormality of higher mental function0Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormal reproductive system morphology0Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormal homeostasis0Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormal eye physiology0Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormality of movement0Moderately InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the ovary0InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the menstrual cycle0InformativeDirect
Phenotypic Abnormality (PA)Microcephaly0InformativeDirect
Phenotypic Abnormality (PA)Visual impairment0InformativeDirect
Phenotypic Abnormality (PA)Abnormal fundus morphology0InformativeDirect
Phenotypic Abnormality (PA)Seizures0InformativeDirect
Phenotypic Abnormality (PA)Hypertonia0InformativeDirect
Phenotypic Abnormality (PA)Generalized hypotonia0InformativeDirect
Phenotypic Abnormality (PA)Fever0InformativeDirect
Phenotypic Abnormality (PA)Neurological speech impairment0InformativeDirect
Phenotypic Abnormality (PA)Abnormal circulating hormone level0InformativeDirect
Phenotypic Abnormality (PA)Reduced consciousness/confusion0InformativeDirect
Phenotypic Abnormality (PA)Impairment in personality functioning0InformativeDirect
Phenotypic Abnormality (PA)Macrocephaly0Highly InformativeDirect
Phenotypic Abnormality (PA)Emotional lability0Highly InformativeDirect
Phenotypic Abnormality (PA)Primary amenorrhea0Highly InformativeDirect
Phenotypic Abnormality (PA)Dysarthria0Highly InformativeDirect
Phenotypic Abnormality (PA)Gait disturbance0Highly InformativeDirect
Phenotypic Abnormality (PA)Memory impairment0Highly InformativeDirect
Phenotypic Abnormality (PA)Developmental regression0Highly InformativeDirect
Phenotypic Abnormality (PA)Reduced visual acuity0Highly InformativeDirect
Phenotypic Abnormality (PA)Abnormal CNS myelination0Highly InformativeDirect
Phenotypic Abnormality (PA)Abnormality of the optic disc0Highly InformativeDirect

LINKTO: Domain2BO Download and Domain2BO Algorithm

WP

Worm Phenotype (WP)

WP term FDR (all) SDWP (four levels) Annotation (direct or inherited)
Worm Phenotype (WP)growth variant0--Direct
Worm Phenotype (WP)developmental timing variant0--Direct
Worm Phenotype (WP)general pace of development variant0--Direct
Worm Phenotype (WP)postembryonic development variant0--Direct
Worm Phenotype (WP)embryonic lethal0--Direct
Worm Phenotype (WP)lethal0--Direct
Worm Phenotype (WP)fertility variant0--Direct
Worm Phenotype (WP)retarded heterochronic variations0--Direct
Worm Phenotype (WP)development variant0--Direct
Worm Phenotype (WP)morphology variant0--Direct
Worm Phenotype (WP)organism development variant0--Direct
Worm Phenotype (WP)organism morphology variant0--Direct
Worm Phenotype (WP)organ system physiology variant0--Direct
Worm Phenotype (WP)organism physiology variant0--Direct
Worm Phenotype (WP)organism homeostasis metabolism variant0--Direct
Worm Phenotype (WP)reproductive system physiology variant0--Direct
Worm Phenotype (WP)maternal sterile0--Direct
Worm Phenotype (WP)hermaphrodite sterile0--Direct
Worm Phenotype (WP)embryonic development variant0--Direct
Worm Phenotype (WP)larval development variant0--Direct
Worm Phenotype (WP)hermaphrodite fertility variant0--Direct
Worm Phenotype (WP)developmental growth variant0--Direct
Worm Phenotype (WP)larval growth variant0--Direct
Worm Phenotype (WP)hermaphrodite fertility reduced0--Direct
Worm Phenotype (WP)fertility reduced0--Direct
Worm Phenotype (WP)physiology variant1--Inherited
Worm Phenotype (WP)sterile1--Inherited
Worm Phenotype (WP)slow growth0Least InformativeDirect
Worm Phenotype (WP)larval arrest0Least InformativeDirect

LINKTO: Domain2BO Download and Domain2BO Algorithm

YP

Yeast Phenotype (YP)

YP term FDR (all) SDYP (four levels) Annotation (direct or inherited)
Yeast Phenotype (YP)competitive fitness0--Direct
Yeast Phenotype (YP)fitness0--Direct

LINKTO: Domain2BO Download and Domain2BO Algorithm

FP

Fly Phenotype (FP)

FP term FDR (all) SDFP (four levels) Annotation (direct or inherited)
Fly Phenotype (FP)phenotype0--Direct
Fly Phenotype (FP)increased mortality0Least InformativeDirect

LINKTO: Domain2BO Download and Domain2BO Algorithm

XA

Xenopus Anatomy (XA)

XA term FDR (all) SDXA (four levels) Annotation (direct or inherited)
Xenopus ANatomical entity (XAN)head region0--Direct
Xenopus ANatomical entity (XAN)trunk region0--Direct
Xenopus ANatomical entity (XAN)genital system0--Direct
Xenopus ANatomical entity (XAN)male genitalia0--Direct
Xenopus ANatomical entity (XAN)central nervous system0--Direct
Xenopus ANatomical entity (XAN)anatomical structure0--Direct
Xenopus ANatomical entity (XAN)anatomical group0--Direct
Xenopus ANatomical entity (XAN)male organism0--Direct
Xenopus ANatomical entity (XAN)primary germ layer0--Direct
Xenopus ANatomical entity (XAN)organism subdivision0--Direct
Xenopus ANatomical entity (XAN)compound organ0--Direct
Xenopus ANatomical entity (XAN)gonad0--Direct
Xenopus ANatomical entity (XAN)anatomical region0--Direct
Xenopus ANatomical entity (XAN)multicellular anatomical structure0--Direct
Xenopus ANatomical entity (XAN)anatomical system1--Inherited
Xenopus ANatomical entity (XAN)whole organism1--Inherited
Xenopus ANatomical entity (XAN)embryo0Least InformativeDirect
Xenopus ANatomical entity (XAN)urogenital system0Least InformativeDirect
Xenopus ANatomical entity (XAN)nervous system0Least InformativeDirect
Xenopus ANatomical entity (XAN)head0Least InformativeDirect
Xenopus ANatomical entity (XAN)trunk0Least InformativeDirect
Xenopus ANatomical entity (XAN)tissue0Least InformativeDirect
Xenopus ANatomical entity (XAN)cavitated compound organ0Least InformativeDirect
Xenopus ANatomical entity (XAN)testis0Moderately InformativeDirect
 
XA term FDR (all) SDXA (four levels) Annotation (direct or inherited)
Xenopus DEvelopment stage (XDE)tadpole stage0--Direct
Xenopus DEvelopment stage (XDE)metamorphosing tadpole stage0--Direct
Xenopus DEvelopment stage (XDE)climax stage0--Direct
Xenopus DEvelopment stage (XDE)NF stage0--Direct
Xenopus DEvelopment stage (XDE)post-embryonic stage0Least InformativeDirect

LINKTO: Domain2BO Download and Domain2BO Algorithm

AP

Arabidopsis Plant Ontology (AP)

AP term FDR (all) SDAP (four levels) Annotation (direct or inherited)
Plant ANatomical entity (PAN)guard cell0--Direct
Plant ANatomical entity (PAN)stomatal complex0--Direct
Plant ANatomical entity (PAN)epidermal cell0--Direct
Plant ANatomical entity (PAN)epidermis0--Direct
Plant ANatomical entity (PAN)shoot epidermis0--Direct
Plant ANatomical entity (PAN)plant cell0--Direct
Plant ANatomical entity (PAN)shoot system0--Direct
Plant ANatomical entity (PAN)portion of plant tissue0--Direct
Plant ANatomical entity (PAN)shoot epidermal cell0--Direct
Plant ANatomical entity (PAN)collective plant structure0--Direct
Plant ANatomical entity (PAN)plant structure1--Inherited
Plant ANatomical entity (PAN)collective plant organ structure1--Inherited
 
AP term FDR (all) SDAP (four levels) Annotation (direct or inherited)
Plant structure DEvelopment stage (PDE)whole plant development stage0--Direct
Plant structure DEvelopment stage (PDE)1 main shoot growth stage0--Direct
Plant structure DEvelopment stage (PDE)sporophyte vegetative stage0--Direct
Plant structure DEvelopment stage (PDE)floral organ differentiation stage0--Direct
Plant structure DEvelopment stage (PDE)corolla development stage0--Direct
Plant structure DEvelopment stage (PDE)flowering stage0--Direct
Plant structure DEvelopment stage (PDE)plant embryo stage0--Direct
Plant structure DEvelopment stage (PDE)collective plant organ structure development stage0--Direct
Plant structure DEvelopment stage (PDE)plant organ development stage0--Direct
Plant structure DEvelopment stage (PDE)reproductive shoot system development stage0--Direct
Plant structure DEvelopment stage (PDE)collective phyllome structure development stage0--Direct
Plant structure DEvelopment stage (PDE)phyllome development stage0--Direct
Plant structure DEvelopment stage (PDE)floral organ formation stage0--Direct
Plant structure DEvelopment stage (PDE)leaf development stage1--Inherited
Plant structure DEvelopment stage (PDE)leaf production stage1--Inherited
Plant structure DEvelopment stage (PDE)flower development stage1--Inherited
Plant structure DEvelopment stage (PDE)life of whole plant stage1--Inherited
Plant structure DEvelopment stage (PDE)shoot system development stage1--Inherited
Plant structure DEvelopment stage (PDE)sporophyte development stage1--Inherited
Plant structure DEvelopment stage (PDE)4 leaf senescence stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)E expanded cotyledon stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)F mature embryo stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)C globular stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)D bilateral stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.12 twelve leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.08 eight leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.02 two leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.10 ten leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.04 four leaves visible stage0Least InformativeDirect
Plant structure DEvelopment stage (PDE)LP.06 six leaves visible stage0Least InformativeDirect

LINKTO: Domain2BO Download and Domain2BO Algorithm

EC

Enzyme Commission (EC)

EC term FDR (all) SDEC (four levels) Annotation (direct or inherited)
Enzyme Commission (EC)S-methyl-5-thioribose-1-phosphate isomerase0--Direct
Enzyme Commission (EC)Ribose 1,5-bisphosphate isomerase0.00000024--Direct
Enzyme Commission (EC)Isomerases0Moderately InformativeDirect
Enzyme Commission (EC)Intramolecular oxidoreductases0InformativeDirect
Enzyme Commission (EC)Interconverting aldoses and ketoses0Highly InformativeDirect

LINKTO: Domain2BO Download and Domain2BO Algorithm

CD

CTD Diseases (CD)

CD term FDR (all) SDCD (four levels) Annotation (direct or inherited)
CTD Diseases (CD)Vanishing White Matter Leukodystrophy with Ovarian Failure0--Direct
CTD Diseases (CD)Adnexal Diseases0--Direct
CTD Diseases (CD)Central Nervous System Diseases0--Direct
CTD Diseases (CD)Gonadal Disorders0--Direct
CTD Diseases (CD)Female Urogenital Diseases0--Direct
CTD Diseases (CD)Leukoencephalopathies0--Direct
CTD Diseases (CD)Female Urogenital Diseases and Pregnancy Complications0Least InformativeDirect
CTD Diseases (CD)Nervous System Diseases0Least InformativeDirect
CTD Diseases (CD)Brain Diseases0Moderately InformativeDirect
CTD Diseases (CD)Endocrine System Diseases0Moderately InformativeDirect
CTD Diseases (CD)Genital Diseases, Female0InformativeDirect
CTD Diseases (CD)Ovarian Diseases0Highly InformativeDirect

LINKTO: Domain2BO Download and Domain2BO Algorithm

CC

CTD Chemicals (CC)

CC term FDR (all) SDCC (four levels) Annotation (direct or inherited)
CTD Chemicals (CC)Heterocyclic Compounds, Fused-Ring0--Direct
CTD Chemicals (CC)Heterocyclic Compounds0--Direct
CTD Chemicals (CC)Heterocyclic Compounds, 1-Ring0--Direct
CTD Chemicals (CC)Heterocyclic Compounds, 2-Ring0--Direct
CTD Chemicals (CC)Hydrocarbons0--Direct
CTD Chemicals (CC)Hydrocarbons, Aromatic0--Direct
CTD Chemicals (CC)Hydrocarbons, Cyclic0--Direct
CTD Chemicals (CC)Inorganic Chemicals0--Direct
CTD Chemicals (CC)Organic Chemicals0--Direct
CTD Chemicals (CC)Polycyclic Compounds0--Direct
CTD Chemicals (CC)Pyrans0--Direct
CTD Chemicals (CC)Acids, Noncarboxylic1--Inherited
CTD Chemicals (CC)Acids0Least InformativeDirect
CTD Chemicals (CC)Benzopyrans0Least InformativeDirect
CTD Chemicals (CC)Polycyclic Aromatic Hydrocarbons0Least InformativeDirect
CTD Chemicals (CC)Sulfur Compounds0Least InformativeDirect
CTD Chemicals (CC)Complex Mixtures0Least InformativeDirect
CTD Chemicals (CC)Sulfur Acids0Moderately InformativeDirect

LINKTO: Domain2BO Download and Domain2BO Algorithm

Distribution on sTOL

Plot distribution on species Tree Of Life (sTOL) for this domain, i.e., present or absent across genomes/tips
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