dcGO - A comprehensive domain-centric ontology resource for post-genomic research on functions, phenotypes, diseases and more   
  
  

TRAF domain-like superfamily

Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   All beta proteins [ 48724] (174)
Fold:   TRAF domain-like [ 49598]
Superfamily:   TRAF domain-like [ 49599] (2)
Families:   MATH domain [ 49600] (4)
  SIAH, seven in absentia homolog [ 69198]

HP

Human Phenotype (HP)

HP term FDR (all) SDHP (four levels) Annotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of head or neck0--Direct
Phenotypic Abnormality (PA)Abnormality of the face0--Direct
Phenotypic Abnormality (PA)Abnormality of the head0Least InformativeDirect

LINKTO: Domain2BO Download and Domain2BO Algorithm

WP

Worm Phenotype (WP)

WP term FDR (all) SDWP (four levels) Annotation (direct or inherited)
Worm Phenotype (WP)lethal0--Direct
Worm Phenotype (WP)development variant0--Direct
Worm Phenotype (WP)organism development variant0--Direct
Worm Phenotype (WP)physiology variant1--Inherited

LINKTO: Domain2BO Download and Domain2BO Algorithm

FA

Fly Anatomy (FA)

FA term FDR (all) SDFA (four levels) Annotation (direct or inherited)
Fly Anatomy (FA)organism0--Direct
Fly Anatomy (FA)organ system0--Direct
Fly Anatomy (FA)multicellular structure0--Direct
Fly Anatomy (FA)anatomical structure1--Inherited
Fly Anatomy (FA)material anatomical entity1--Inherited

LINKTO: Domain2BO Download and Domain2BO Algorithm

XA

Xenopus Anatomy (XA)

XA term FDR (all) SDXA (four levels) Annotation (direct or inherited)
Xenopus ANatomical entity (XAN)anatomical structure0--Direct
Xenopus ANatomical entity (XAN)anatomical group0--Direct
Xenopus ANatomical entity (XAN)organism subdivision0--Direct
Xenopus ANatomical entity (XAN)compound organ0--Direct
Xenopus ANatomical entity (XAN)anatomical region0--Direct
Xenopus ANatomical entity (XAN)multicellular anatomical structure0--Direct
Xenopus ANatomical entity (XAN)whole organism1--Inherited
Xenopus ANatomical entity (XAN)cavitated compound organ0Least InformativeDirect

LINKTO: Domain2BO Download and Domain2BO Algorithm

AP

Arabidopsis Plant Ontology (AP)

AP term FDR (all) SDAP (four levels) Annotation (direct or inherited)
Plant ANatomical entity (PAN)shoot system0.9195--Inherited
Plant ANatomical entity (PAN)phyllome1--Inherited
Plant ANatomical entity (PAN)plant organ1--Inherited
Plant ANatomical entity (PAN)plant structure1--Inherited
Plant ANatomical entity (PAN)vascular leaf1--Inherited
Plant ANatomical entity (PAN)collective plant organ structure1--Inherited
Plant ANatomical entity (PAN)multi-tissue plant structure1--Inherited
Plant ANatomical entity (PAN)collective plant structure1--Inherited
Plant ANatomical entity (PAN)leaf0.9887Least InformativeInherited
Plant ANatomical entity (PAN)rosette leaf0.000233InformativeDirect

LINKTO: Domain2BO Download and Domain2BO Algorithm

EC

Enzyme Commission (EC)

EC term FDR (all) SDEC (four levels) Annotation (direct or inherited)
Enzyme Commission (EC)Acyltransferases0--Direct
Enzyme Commission (EC)Ubiquitinyl hydrolase 10--Direct
Enzyme Commission (EC)Transferases0.0000000000005217--Direct
Enzyme Commission (EC)Meprin A0.00000009705--Direct
Enzyme Commission (EC)Meprin B0.00000009705--Direct
Enzyme Commission (EC)Hydrolases0.2483Least InformativeInherited
Enzyme Commission (EC)Aminoacyltransferases0Moderately InformativeDirect
Enzyme Commission (EC)Acting on peptide bonds (peptidases)0.00000000001824Moderately InformativeDirect
Enzyme Commission (EC)RING-type E3 ubiquitin transferase0InformativeDirect
Enzyme Commission (EC)Omega peptidases0.000000006353InformativeDirect
Enzyme Commission (EC)Metalloendopeptidases0.0001125InformativeDirect

LINKTO: Domain2BO Download and Domain2BO Algorithm

CC

CTD Chemicals (CC)

CC term FDR (all) SDCC (four levels) Annotation (direct or inherited)
CTD Chemicals (CC)Menthol0.0000003054--Direct
CTD Chemicals (CC)Hexanols0.00003501--Direct
CTD Chemicals (CC)Fatty Alcohols0.006994--Inherited
CTD Chemicals (CC)Cyclohexanes0.1176--Inherited
CTD Chemicals (CC)Hydrocarbons, Alicyclic0.2295--Inherited
CTD Chemicals (CC)Cycloparaffins0.3264--Inherited
CTD Chemicals (CC)Polycyclic Compounds0.3442--Inherited
CTD Chemicals (CC)Lipids0.5846--Inherited
CTD Chemicals (CC)Hydrocarbons, Cyclic0.6514--Inherited
CTD Chemicals (CC)Hydrocarbons0.7319--Inherited
CTD Chemicals (CC)Organic Chemicals0.7675--Inherited
CTD Chemicals (CC)Aniline Compounds0.9284--Inherited
CTD Chemicals (CC)Terpenes0.1549Least InformativeInherited
CTD Chemicals (CC)Macrocyclic Compounds0.4301Least InformativeInherited
CTD Chemicals (CC)Amines0.9758Least InformativeInherited
CTD Chemicals (CC)Monoterpenes0.0007045Moderately InformativeDirect
CTD Chemicals (CC)Alcohols0.205Moderately InformativeInherited
CTD Chemicals (CC)Cyclohexane Monoterpenes0.000001143InformativeDirect
CTD Chemicals (CC)Cyclohexanols0.0001114InformativeDirect
CTD Chemicals (CC)2-anisidine0.000004991Highly InformativeDirect

LINKTO: Domain2BO Download and Domain2BO Algorithm

Distribution on sTOL

Plot distribution on species Tree Of Life (sTOL) for this domain, i.e., present or absent across genomes/tips
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