dcGO - A comprehensive domain-centric ontology resource for post-genomic research on functions, phenotypes, diseases and more   
  
  

Ran binding protein zinc finger-like superfamily

Root:   SCOP hierarchy in SUPERFAMILY [ 0] (11)
Class:   Small proteins [ 56992] (90)
Fold:   Rubredoxin-like [ 57769] (17)
Superfamily:   Ran binding protein zinc finger-like [ 90209]
Families:   Ran binding protein zinc finger-like [ 90210] (6)

DO

Disease Ontology (DO)

DO term FDR (all) SDDO (four levels) Annotation (direct or inherited)
Disease Ontology (DO)sarcoma0.0003378--Direct
Disease Ontology (DO)retinal cancer0.0007472--Direct
Disease Ontology (DO)sensory system cancer0.0008187--Direct
Disease Ontology (DO)cancer0.08566--Inherited
Disease Ontology (DO)disease of cellular proliferation0.09692--Inherited
Disease Ontology (DO)ocular cancer1--Inherited
Disease Ontology (DO)organ system cancer0.7697Least InformativeInherited
Disease Ontology (DO)nervous system cancer0.05957Moderately InformativeInherited
Disease Ontology (DO)cell type cancer0.8455Moderately InformativeInherited
Disease Ontology (DO)retinal cell cancer0.0007229Highly InformativeDirect

LINKTO: Domain2BO Download and Domain2BO Algorithm

HP

Human Phenotype (HP)

HP term FDR (all) SDHP (four levels) Annotation (direct or inherited)
Phenotypic Abnormality (PA)Abnormality of the digestive system0.0415Least InformativeInherited
Phenotypic Abnormality (PA)Abnormality of the gastrointestinal tract0.5373Moderately InformativeInherited
Phenotypic Abnormality (PA)Abnormality of digestive system physiology0.5591Moderately InformativeInherited
Phenotypic Abnormality (PA)Functional abnormality of the gastrointestinal tract0.3388InformativeInherited
Phenotypic Abnormality (PA)Abnormal gastrointestinal motility0.0001012Highly InformativeDirect

LINKTO: Domain2BO Download and Domain2BO Algorithm

MP

Mouse Phenotype (MP)

MP term FDR (all) SDMP (four levels) Annotation (direct or inherited)
Mammalian Phenotype (MP)abnormal mortality induced by ionizing radiation0.000001641--Direct
Mammalian Phenotype (MP)decreased B cell number0.00002683--Direct
Mammalian Phenotype (MP)decreased B-1a cell number0.00005307--Direct
Mammalian Phenotype (MP)increased cell death0.0001151--Direct
Mammalian Phenotype (MP)abnormal B-1a B cell morphology0.0001173--Direct
Mammalian Phenotype (MP)abnormal B cell number0.000143--Direct
Mammalian Phenotype (MP)abnormal B cell morphology0.0002924--Direct
Mammalian Phenotype (MP)decreased leukocyte cell number0.001977--Inherited
Mammalian Phenotype (MP)abnormal apoptosis0.002021--Inherited
Mammalian Phenotype (MP)decreased hematopoietic cell number0.005315--Inherited
Mammalian Phenotype (MP)abnormal leukocyte cell number0.01103--Inherited
Mammalian Phenotype (MP)abnormal cell physiology0.01117--Inherited
Mammalian Phenotype (MP)abnormal lymphocyte morphology0.01225--Inherited
Mammalian Phenotype (MP)abnormal leukocyte morphology0.02047--Inherited
Mammalian Phenotype (MP)abnormal immune system cell morphology0.02149--Inherited
Mammalian Phenotype (MP)abnormal professional antigen presenting cell morphology0.03352--Inherited
Mammalian Phenotype (MP)decreased B-1 B cell number0.03771--Inherited
Mammalian Phenotype (MP)abnormal hematopoietic cell morphology0.07394--Inherited
Mammalian Phenotype (MP)abnormal B-1 B cell morphology0.1038--Inherited
Mammalian Phenotype (MP)decreased lymphocyte cell number0.1405--Inherited
Mammalian Phenotype (MP)abnormal immune system morphology0.1656--Inherited
Mammalian Phenotype (MP)abnormal lymphocyte cell number0.1684--Inherited
Mammalian Phenotype (MP)homeostasis/metabolism phenotype0.2283--Inherited
Mammalian Phenotype (MP)abnormal hematopoietic system morphology/development0.4875--Inherited
Mammalian Phenotype (MP)abnormal mature B cell number0.5771--Inherited
Mammalian Phenotype (MP)cellular phenotype0.02743Least InformativeInherited
Mammalian Phenotype (MP)hematopoietic system phenotype0.1022Least InformativeInherited
Mammalian Phenotype (MP)immune system phenotype0.1101Least InformativeInherited
Mammalian Phenotype (MP)mortality/aging0.4579Least InformativeInherited
Mammalian Phenotype (MP)abnormal metabolism0.0123Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal hematopoietic cell number0.02255Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal induced morbidity/mortality0.02719Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal cell death0.08184Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal cell morphology0.09967Moderately InformativeInherited
Mammalian Phenotype (MP)abnormal mononuclear cell morphology0.5056Moderately InformativeInherited
Mammalian Phenotype (MP)increased apoptosis0.0001108InformativeDirect
Mammalian Phenotype (MP)abnormal response to radiation0.0001295InformativeDirect
Mammalian Phenotype (MP)abnormal mature B cell morphology0.0001483InformativeDirect
Mammalian Phenotype (MP)abnormal sensitivity to induced morbidity/mortality0.01263InformativeInherited
Mammalian Phenotype (MP)increased mortality induced by ionizing radiation0.000001329Highly InformativeDirect
Mammalian Phenotype (MP)abnormal cell nucleus morphology0.0002939Highly InformativeDirect
Mammalian Phenotype (MP)abnormal B-1 B cell number0.001014Highly InformativeInherited
Mammalian Phenotype (MP)decreased mature B cell number0.4298Highly InformativeInherited

LINKTO: Domain2BO Download and Domain2BO Algorithm

WP

Worm Phenotype (WP)

WP term FDR (all) SDWP (four levels) Annotation (direct or inherited)
Worm Phenotype (WP)growth variant0--Direct
Worm Phenotype (WP)slow growth0--Direct
Worm Phenotype (WP)developmental timing variant0--Direct
Worm Phenotype (WP)postembryonic development variant0--Direct
Worm Phenotype (WP)embryonic lethal0--Direct
Worm Phenotype (WP)larval arrest0--Direct
Worm Phenotype (WP)lethal0--Direct
Worm Phenotype (WP)progeny variant0--Direct
Worm Phenotype (WP)fertility variant0--Direct
Worm Phenotype (WP)development variant0--Direct
Worm Phenotype (WP)morphology variant0--Direct
Worm Phenotype (WP)organism development variant0--Direct
Worm Phenotype (WP)organism morphology variant0--Direct
Worm Phenotype (WP)organ system physiology variant0--Direct
Worm Phenotype (WP)organism physiology variant0--Direct
Worm Phenotype (WP)organism homeostasis metabolism variant0--Direct
Worm Phenotype (WP)reproductive system physiology variant0--Direct
Worm Phenotype (WP)maternal sterile0--Direct
Worm Phenotype (WP)hermaphrodite sterile0--Direct
Worm Phenotype (WP)embryonic development variant0--Direct
Worm Phenotype (WP)hermaphrodite fertility variant0--Direct
Worm Phenotype (WP)developmental growth variant0--Direct
Worm Phenotype (WP)hermaphrodite fertility reduced0--Direct
Worm Phenotype (WP)fertility reduced0--Direct
Worm Phenotype (WP)physiology variant1--Inherited
Worm Phenotype (WP)sterile1--Inherited
Worm Phenotype (WP)general pace of development variant0Least InformativeDirect
Worm Phenotype (WP)larval lethal0Least InformativeDirect
Worm Phenotype (WP)retarded heterochronic variations0Least InformativeDirect
Worm Phenotype (WP)larval development variant0Least InformativeDirect
Worm Phenotype (WP)larval growth variant0Least InformativeDirect
Worm Phenotype (WP)sterile progeny0Moderately InformativeDirect

LINKTO: Domain2BO Download and Domain2BO Algorithm

FA

Fly Anatomy (FA)

FA term FDR (all) SDFA (four levels) Annotation (direct or inherited)
Fly Anatomy (FA)organism0--Direct
Fly Anatomy (FA)multicellular structure0--Direct
Fly Anatomy (FA)anatomical structure1--Inherited
Fly Anatomy (FA)material anatomical entity1--Inherited

LINKTO: Domain2BO Download and Domain2BO Algorithm

ZA

Zebrafish Anatomy (ZA)

ZA term FDR (all) SDZA (four levels) Annotation (direct or inherited)
Zebrafish Anatomy (ZA)whole organism0--Direct
Zebrafish Anatomy (ZA)anatomical structure1--Inherited

LINKTO: Domain2BO Download and Domain2BO Algorithm

XA

Xenopus Anatomy (XA)

XA term FDR (all) SDXA (four levels) Annotation (direct or inherited)
Xenopus ANatomical entity (XAN)anatomical structure0--Direct
Xenopus ANatomical entity (XAN)anatomical group0--Direct
Xenopus ANatomical entity (XAN)organism subdivision0--Direct
Xenopus ANatomical entity (XAN)compound organ0--Direct
Xenopus ANatomical entity (XAN)anatomical region0--Direct
Xenopus ANatomical entity (XAN)multicellular anatomical structure0--Direct
Xenopus ANatomical entity (XAN)anatomical system1--Inherited
Xenopus ANatomical entity (XAN)whole organism1--Inherited
Xenopus ANatomical entity (XAN)urogenital system0Least InformativeDirect
Xenopus ANatomical entity (XAN)cavitated compound organ0Least InformativeDirect

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AP

Arabidopsis Plant Ontology (AP)

AP term FDR (all) SDAP (four levels) Annotation (direct or inherited)
Plant ANatomical entity (PAN)stomatal complex0--Direct
Plant ANatomical entity (PAN)epidermal cell0--Direct
Plant ANatomical entity (PAN)epidermis0--Direct
Plant ANatomical entity (PAN)shoot epidermis0--Direct
Plant ANatomical entity (PAN)plant cell0--Direct
Plant ANatomical entity (PAN)shoot system0--Direct
Plant ANatomical entity (PAN)portion of plant tissue0--Direct
Plant ANatomical entity (PAN)shoot epidermal cell0--Direct
Plant ANatomical entity (PAN)collective plant structure0--Direct
Plant ANatomical entity (PAN)plant structure1--Inherited
Plant ANatomical entity (PAN)collective plant organ structure1--Inherited
Plant ANatomical entity (PAN)guard cell0Least InformativeDirect
 
AP term FDR (all) SDAP (four levels) Annotation (direct or inherited)
Plant structure DEvelopment stage (PDE)whole plant development stage0--Direct
Plant structure DEvelopment stage (PDE)sporophyte vegetative stage0--Direct
Plant structure DEvelopment stage (PDE)plant embryo stage0--Direct
Plant structure DEvelopment stage (PDE)life of whole plant stage1--Inherited
Plant structure DEvelopment stage (PDE)sporophyte development stage1--Inherited
Plant structure DEvelopment stage (PDE)E expanded cotyledon stage0Least InformativeDirect

LINKTO: Domain2BO Download and Domain2BO Algorithm

EC

Enzyme Commission (EC)

EC term FDR (all) SDEC (four levels) Annotation (direct or inherited)
Enzyme Commission (EC)Ubiquitinyl hydrolase 10--Direct
Enzyme Commission (EC)Acyltransferases5.111e-16--Direct
Enzyme Commission (EC)RBR-type E3 ubiquitin transferase0.0000000004394--Direct
Enzyme Commission (EC)Other carbon-oxygen lyases0.00000284--Direct
Enzyme Commission (EC)Transferases0.008813--Inherited
Enzyme Commission (EC)Hydrolases0.09462Least InformativeInherited
Enzyme Commission (EC)Lyases0.4084Least InformativeInherited
Enzyme Commission (EC)Aminoacyltransferases0Moderately InformativeDirect
Enzyme Commission (EC)Acting on peptide bonds (peptidases)0.0000002456Moderately InformativeDirect
Enzyme Commission (EC)Carbon-oxygen lyases0.0616Moderately InformativeInherited
Enzyme Commission (EC)Omega peptidases0.000000000000002018InformativeDirect
Enzyme Commission (EC)DNA-(apurinic or apyrimidinic site) lyase0.000001898Highly InformativeDirect

LINKTO: Domain2BO Download and Domain2BO Algorithm

CD

CTD Diseases (CD)

CD term FDR (all) SDCD (four levels) Annotation (direct or inherited)
CTD Diseases (CD)Neoplasms, Connective and Soft Tissue0.009304--Inherited
CTD Diseases (CD)Neoplasms by Histologic Type0.08968--Inherited
CTD Diseases (CD)Neoplasms0.2507Least InformativeInherited
CTD Diseases (CD)Sarcoma0.0005462Highly InformativeDirect

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CC

CTD Chemicals (CC)

CC term FDR (all) SDCC (four levels) Annotation (direct or inherited)
CTD Chemicals (CC)Inorganic Chemicals0--Direct
CTD Chemicals (CC)Organic Chemicals0--Direct

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Distribution on sTOL

Plot distribution on species Tree Of Life (sTOL) for this domain, i.e., present or absent across genomes/tips
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