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  Home > SCOP hierarchy > Domain combination - 102414

Domain combinations for 102414 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

102414 - Alpha-2,3/8-sialyltransferase CstII

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Ochotona_princeps_76   (American pika)   0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   0
Latimeria_chalumnae_76_1   (Coelacanth)   0
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   0
Ciona_intestinalis_76   (Vase tunicate)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Lottia_gigantea_   (Owl limpet)   0
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   0
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   0
Atta_cephalotes_v1.1 0
Camponotus_floridanus_v3.3   (Florida carpenter ant)   0
Rhodnius_prolixus_22 0
Tetranychus_urticae_   (Two-spotted spider mite)   0
Onchocerca_volvulus_22 0
Caenorhabditis_japonica_ 0
Caenorhabditis_brenneri_ 0
Caenorhabditis_remanei_ 0
Caenorhabditis_elegans_76_235   (Roundworm)   0
Caenorhabditis_briggsae_2 0
Acropora_digitifera_v1.0 0
Hydra_vulgaris 0
Conidiobolus_coronatus_NRRL28638_v1.0 0
Amanita_muscaria_Koide_v1.0   (Fly agaric)   0
Cochliobolus_lunatus_m118_v2.0 0
Pyrenophora_teres_f._teres_22 0
Penicillium_marneffei_ATCC_18224_ 0
Dekkera_bruxellensis_CBS_2499_v2.0 0
Candida_dubliniensis_CD36_ 0
Candida_albicans_SC5314 0
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 0
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 0
Candida_glabrata_CBS138 0
Dictyostelium_discoideum 0
Dictyostelium_purpureum_ 0
Entamoeba_dispar_1.2 0
Malus_domestica_v196   (Apple)   0
Triticum_aestivum_22   (Bread wheat)   0
Brachypodium_distachyon_   (Stiff brome)   0
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Panicum_virgatum_v202   (Switchgrass)   0
Bigelowiella_natans_CCMP2755_22 0
Fragilariopsis_cylindrus 0
Paramecium_tetraurelia_ 0
Cryptosporidium_muris 0
Theileria_annulata 0
Plasmodium_falciparum_3D7_ 0
Plasmodium_vivax_SaI-1_7.0 0
Plasmodium_knowlesi_strain_H_ 0
Plasmodium_yoelii_ssp._yoelii_1_ 0
Plasmodium_chabaudi_ 0
Naegleria_gruberi_ 0
Trichomonas_vaginalis_ 0
Guillardia_theta_CCMP2712_v1.0_ 0
Synechocystis_sp._PCC_6803 0
Gloeocapsa_sp._PCC_7428 0
Mycoplasma_pulmonis_UAB_CTIP 0
Sulfobacillus_acidophilus_DSM_10332 0
Desulfosporosinus_orientis_DSM_765 0
Dehalobacter_sp._DCA 0
Dehalobacter_sp._CF 0
Desulfitobacterium_hafniense_Y51 0
Caldicellulosiruptor_hydrothermalis_108 0
Caldicellulosiruptor_owensensis_OL 0
Caldicellulosiruptor_saccharolyticus_DSM_8903 0
Caldicellulosiruptor_bescii_DSM_6725 0
Exiguobacterium_sibiricum_255-15 0
Geobacillus_thermoglucosidasius_C56-YS93 0
Oceanobacillus_iheyensis_HTE831 0
Chlorobium_limicola_DSM_245 0
Haliscomenobacter_hydrossis_DSM_1100 0
Niastella_koreensis_GR20-10 0
Chitinophaga_pinensis_DSM_2588 0
Cytophaga_hutchinsonii_ATCC_33406 0
Bacteroides_sp._CF50 0
Bacteroides_thetaiotaomicron_VPI-5482 0
Bacteroides_fragilis_YCH46 0
Fluviicola_taffensis_DSM_16823 0
Owenweeksia_hongkongensis_DSM_17368 0
Polaribacter_sp._MED152 0
Flavobacterium_psychrophilum_JIP02/86 0
Borrelia_garinii_PBi 0
Borrelia_burgdorferi_B31 0
Spirochaeta_africana_DSM_8902 0
Thermodesulfatator_indicus_DSM_15286 0
Deferribacter_desulfuricans_SSM1 0
Granulicella_mallensis_MP5ACTX8 0
Acidithiobacillus_ferrivorans_SS3 0
Bdellovibrio_bacteriovorus_HD100 0
Helicobacter_cetorum_MIT_00-7128 2
Helicobacter_bizzozeronii_CIII-1 1
Helicobacter_mustelae_12198 1
Helicobacter_felis_ATCC_49179 2
Helicobacter_acinonychis_str._Sheeba 0
Desulfotalea_psychrophila_LSv54 0
Desulfatibacillum_alkenivorans_AK-01 0
Desulfomicrobium_baculatum_DSM_4028 0
Desulfovibrio_aespoeensis_Aspo-2 0
Burkholderia_rhizoxinica_HKI_454 0
Magnetococcus_marinus_MC-1 0
Magnetospirillum_magneticum_AMB-1 0
Haemophilus_influenzae_PittEE 2
Aeromonas_veronii_B565 0
Vibrio_splendidus_LGP32 0
Vibrio_furnissii_NCTC_11218 0
Psychromonas_sp._CNPT3 0
Shewanella_piezotolerans_WP3 0
Shewanella_sp._MR-4 0
Shewanella_frigidimarina_NCIMB_400 0
Pseudoalteromonas_sp._SM9913 0
Photorhabdus_luminescens_subsp._laumondii_TTO1 0
Enterobacter_cloacae_subsp._dissolvens_SDM 0
Moraxella_catarrhalis_RH4 0
Acinetobacter_sp._ADP1 0
Desulfurococcus_fermentans_DSM_16532 0
Desulfurococcus_kamchatkensis_1221n 0
Desulfurococcus_mucosus_DSM_2162 0
Pyrococcus_sp._ST04 0
Halomicrobium_mukohataei_DSM_12286 0
Methanothermococcus_okinawensis_IH1 0
Methanothermus_fervidus_DSM_2088 0
Methanobrevibacter_smithii_ATCC_35061 0
Acholeplasma_laidlawii_PG-8A 0

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Strains
Genome     Number
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0
Coccidioides_posadasii_str._Silveira_ 0
Candida_albicans_WO-1_ 0
Saccharomyces_cerevisiae_UC5 0
Saccharomyces_cerevisiae_PW5 0
Saccharomyces_cerevisiae_T7 0
Saccharomyces_cerevisiae_FostersB 0
Saccharomyces_cerevisiae_FostersO 0
Plasmodium_falciparum_HB3_ 0
Plasmodium_falciparum_Dd2_ 0
Synechocystis_sp._PCC_6803_substr._PCC-P 0
Synechocystis_sp._PCC_6803_substr._PCC-N 0
Synechocystis_sp._PCC_6803_substr._GT-I 0
Synechocystis_sp._PCC_6803 0
Cyanothece_sp._ATCC_51142 0
Sulfobacillus_acidophilus_TPY 0
Streptococcus_agalactiae_ILRI112 0
Streptococcus_agalactiae_ILRI005 0
Streptococcus_agalactiae_NEM316 0
Geobacillus_sp._Y4.1MC1 0
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 0
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 0
Bacillus_subtilis_subsp._natto_BEST195 0
Bacteroides_fragilis_638R 0
Bacteroides_fragilis_NCTC_9343 0
Candidatus_Sulcia_muelleri_CARI 0
Nonlabens_dokdonensis_DSW-6 0
Borrelia_burgdorferi_CA382 0
Borrelia_burgdorferi_JD1 0
Borrelia_burgdorferi_N40 0
Borrelia_burgdorferi_ZS7 0
Campylobacter_jejuni_subsp._jejuni_00-2544 1
Campylobacter_jejuni_subsp._jejuni_00-2538 1
Campylobacter_jejuni_subsp._jejuni_00-2426 1
Campylobacter_jejuni_subsp._jejuni_00-2425 1
Campylobacter_jejuni_subsp._jejuni_PT14 1
Campylobacter_jejuni_subsp._jejuni_ICDCCJ07001 1
Campylobacter_jejuni_subsp._jejuni_IA3902 1
Campylobacter_jejuni_subsp._jejuni_81-176 1
Campylobacter_jejuni_subsp._jejuni_NCTC_11168-BN148 1
Campylobacter_jejuni_subsp._jejuni_NCTC_11168_=_ATCC_700819 1
Campylobacter_coli_76339 1
Helicobacter_cetorum_MIT_99-5656 0
Helicobacter_pylori_Shi169 1
Helicobacter_pylori_Shi417 0
Helicobacter_pylori_Aklavik86 1
Helicobacter_pylori_Puno135 0
Helicobacter_pylori_Puno120 0
Helicobacter_pylori_Sat464 0
Helicobacter_pylori_Cuz20 1
Desulfobacula_toluolica_Tol2 0
Pandoraea_pnomenusa_3kgm 0
Pasteurella_multocida_36950 1
Pasteurella_multocida_subsp._multocida_str._Pm70 1
Haemophilus_influenzae_KR494 1
Haemophilus_influenzae_F3047 1
Haemophilus_influenzae_F3031 1
Haemophilus_influenzae_10810 1
Haemophilus_influenzae_PittGG 2
Haemophilus_influenzae_86-028NP 2
Haemophilus_influenzae_R2866 1
Haemophilus_influenzae_R2846 1
Haemophilus_influenzae_Rd_KW20 1
Shewanella_sp._ANA-3 0
Shewanella_sp._MR-7 0
Alteromonas_macleodii_ATCC_27126 0
Raoultella_ornithinolytica_B6 0
Escherichia_coli_536 0
Pseudomonas_fluorescens_F113 0
Acinetobacter_junii__SH205 0
Acinetobacter_lwoffii__SH145 0
Pyrococcus_sp._NA2 0

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Longest transcript per gene
Genome     Number
Ochotona_princeps_69   (American pika)   0
Latimeria_chalumnae_69_1   (Coelacanth)   0
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   0
Ciona_intestinalis_69   (Vase tunicate)   0
Caenorhabditis_elegans_69_215   (Roundworm)   0

Others
Genome     Number
Loa_loa_v3.3_(Request)   (Eye worm)   0
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   0
Malus_x_domestica_(Duplicate)   (Apple)   0
Nicotiana_benthamiana_0.4.4_(Early_draft) 0
Acholeplasma_laidlawii_PG-8A_(duplicate) 0
NCBI_plasmid_sequences_(Plasmids) 0
PDB_chains_(SCOP_1.75)_(PDB) 2
TargetDB__(Targets) 1
STRING_v9.0.5_(STRING) 10
UniProt__viral_sequences_(Viral) 0
Protein_Data_Bank_(all_PDB_sequenc) 15
Protozoadb_2010_08_(Protozoadb) 0
NCBI_viral_sequences_(Viral) 0
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 45
Uniprot_2018_03_genome 182
NCBI_2017_08_genome 1721

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.