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  Home > SCOP hierarchy > Domain combination - 109859

Domain combinations for 109859 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

109859 - NblA-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Felis_catus_76_6.2   (Domestic cat)   0
Oikopleura_dioica 0
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   0
Caenorhabditis_remanei_ 0
Pisolithus_microcarpus_441_v1.0 0
Pisolithus_tinctorius_Marx_270_v1.0 0
Dictyostelium_purpureum_ 0
Picea_abies   (Norway spruce)   0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Phaseolus_vulgaris_v186   (French bean)   0
Populus_trichocarpa_v156   (Black cottonwood)   0
Vitis_vinifera_   (Wine grape)   0
Solanum_lycopersicum_v.2.3   (Tomato)   0
Actinidia_chinensis_Hongyang_ 0
Triticum_urartu_22 0
Triticum_aestivum_22   (Bread wheat)   0
Aegilops_tauschii_22 0
Brachypodium_distachyon_   (Stiff brome)   0
Oryza_barthii_22   (African wild rice)   0
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 0
Oryza_punctata_22 0
Oryza_nivara_22 0
Oryza_brachyantha_22   (Malo sina)   0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   0
Panicum_virgatum_v202   (Switchgrass)   0
Setaria_italica_v164   (Foxtail millet)   0
Zea_mays_subsp._mays_   (Maize)   0
Zea_mays_v181   (Maize)   0
Sorghum_bicolor_   (Sorghum)   0
Cyanidioschyzon_merolae_strain_10D_22 1
Cyanidioschyzon_merolae 1
Porphyridium_purpureum_02_2012 0
Cyanophora_paradoxa_ 0
Phytophthora_infestans_T30-4_ 0
Symbiodinium_minutum_clade_B1_v1.2 0
Trichomonas_vaginalis_ 0
Leptolyngbya_sp._PCC_7376 3
Pseudanabaena_sp._PCC_7367 0
Acaryochloris_marina_MBIC11017 1
Synechocystis_sp._PCC_6803 2
Thermosynechococcus_sp._NK55 1
Thermosynechococcus_elongatus_BP-1 1
Synechococcus_sp._PCC_6312 2
Synechococcus_sp._CC9311 0
Synechococcus_elongatus_PCC_7942 1
Microcoleus_sp._PCC_7113 2
Geitlerinema_sp._PCC_7407 2
Cyanothece_sp._PCC_8802 2
Gloeocapsa_sp._PCC_7428 2
Halothece_sp._PCC_7418 1
Microcystis_aeruginosa_NIES-843 1
Rivularia_sp._PCC_7116 2
Calothrix_sp._PCC_7507 2
Anabaena_variabilis_ATCC_29413 1
'Nostoc_azollae'_0708 2
Nostoc_sp._PCC_7107 1
Nostoc_punctiforme_PCC_73102 4
Nostoc_sp._PCC_7120 2
Nostoc_sp._PCC_7524 1
Anabaena_sp._90 1
Bacillus_megaterium_DSM_319 0
Borrelia_afzelii_PKo 0
Borrelia_burgdorferi_B31 0
Marinomonas_posidonica_IVIA-Po-181 0

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Strains
Genome     Number
Hordeum_vulgare_22   (Domesticated barley)   0
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0
Chroococcidiopsis_thermalis_PCC_7203 3
Chamaesiphon_minutus_PCC_6605 3
Synechocystis_sp._PCC_6803_substr._PCC-P 2
Synechocystis_sp._PCC_6803_substr._PCC-N 2
Synechocystis_sp._PCC_6803_substr._GT-I 2
Synechocystis_sp._PCC_6803 2
Dactylococcopsis_salina_PCC_8305 1
Synechococcus_sp._JA-2-3B'a(2-13) 1
Synechococcus_sp._JA-3-3Ab 1
Synechococcus_sp._WH_7803 0
Synechococcus_sp._PCC_7002 2
Synechococcus_elongatus_PCC_6301 1
Crinalium_epipsammum_PCC_9333 1
Oscillatoria_nigro-viridis_PCC_7112 2
Oscillatoria_acuminata_PCC_6304 2
Arthrospira_platensis_NIES-39 2
Cyanothece_sp._PCC_7822 2
Cyanothece_sp._PCC_7425 2
Cyanothece_sp._PCC_7424 2
Cyanothece_sp._ATCC_51142 2
Cyanothece_sp._PCC_8801 2
Cyanobacterium_aponinum_PCC_10605 1
Cyanobacterium_stanieri_PCC_7202 2
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 5
Stanieria_cyanosphaera_PCC_7437 5
Calothrix_parietina_Calothrix_sp._PCC_6303 3
Cylindrospermum_stagnale_PCC_7417 2
Anabaena_cylindrica_PCC_7122 2
Bacillus_megaterium_WSH-002 0
Bacillus_megaterium_QM_B1551 0
Borrelia_afzelii_PKo 0
Borrelia_burgdorferi_JD1 0
Borrelia_burgdorferi_N40 0
Wolbachia_endosymbiont_strain_TRS_of_Brugia_malayi 0
Acinetobacter_calcoaceticus_ruh2202 0
Acinetobacter_baumannii_BJAB0715 0

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Others
Genome     Number
Lotus_japonicus__(Early_assembly) 0
Nicotiana_benthamiana_0.4.4_(Early_draft) 0
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   0
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   0
Wolbachia_endosymbiont_of_Brugia_malayi_v1.0_(Broad_Institute) 0
NCBI_plasmid_sequences_(Plasmids) 2
PDB_chains_(SCOP_1.75)_(PDB) 1
Protein_Data_Bank_(all_PDB_sequenc) 22
STRING_v9.0.5_(STRING) 28
UniProt__viral_sequences_(Viral) 1
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 52
NCBI_viral_sequences_(Viral) 2
NCBI_2017_08_genome 445
Uniprot_2018_03_genome 596

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.