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  Home > SCOP hierarchy > Domain combination - 140459

Domain combinations for 140459 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

140459 - PE/PPE dimer-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Macaca_mulatta_76_1   (Rhesus monkey)   0
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_76_3   (Small-eared galago)   0
Microcebus_murinus_76_1   (Gray mouse lemur)   0
Rattus_norvegicus_76_5.0   (Norway rat)   0
Mus_musculus_76_38   (House mouse)   0
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   0
Oryctolagus_cuniculus_76_2   (Rabbit)   0
Sus_scrofa_76_10.2   (Pig)   0
Mustela_putorius_furo_76_1.0   (Domestic ferret)   0
Equus_caballus_76_2   (Horse)   0
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Ornithorhynchus_anatinus_76_5   (Platypus)   0
Petromyzon_marinus_76_7.0   (Sea lamprey)   0
Gadus_morhua_76_1   (Atlantic cod)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   0
Atta_cephalotes_v1.1 0
Drosophila_pseudoobscura_2.13 0
Drosophila_persimilis_1.3 0
Tribolium_castaneum_3.0   (Red flour beetle)   0
Trichinella_spiralis_22 0
Sphaeroforma_arctica_JP610_ 0
Capsaspora_owczarzaki_ATCC_30864_ 0
Mixia_osmundae_IAM_14324_v1.0 0
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 0
Rhodotorula_graminis_WP1_v1.0 0
Sporobolomyces_roseus_IAM_13481_ 0
Microbotryum_violaceum_22 0
Paxillus_rubicundulus_Ve08.2h10_v1.0 0
Pisolithus_microcarpus_441_v1.0 0
Agaricus_bisporus_var._bisporus_ 0
Tulasnella_calospora_AL13/4D_v1.0 1
Fomitopsis_pinicolav1.0 0
Acremonium_alcalophilumv_1.0 0
Trichoderma_reesei_1.2 0
Cochliobolus_victoriae_FI3_v1.0 0
Cochliobolus_carbonum_26-R-13_v1.0 0
Coccidioides_posadasii_RMSCC_3488_ 0
Microsporum_canis_CBS_113480_ 0
Candida_albicans_SC5314 0
Babjeviella_inositovora_NRRL_Y-12698_v1.0 0
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 0
Entamoeba_invadens_1.2 0
Selaginella_moellendorffii_ 0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Thellungiella_halophila_v173 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Linum_usitatissimum_v200   (Flax)   0
Mimulus_guttatus_v140   (Spotted monkey flower)   0
Solanum_tuberosum_   (Potato)   0
Triticum_urartu_22 0
Triticum_aestivum_22   (Bread wheat)   0
Aegilops_tauschii_22 0
Brachypodium_distachyon_   (Stiff brome)   0
Oryza_barthii_22   (African wild rice)   0
Oryza_meridionalis_22 0
Oryza_glumaepatula_22 0
Oryza_glaberrima   (African rice)   0
Oryza_punctata_22 0
Oryza_nivara_22 0
Oryza_brachyantha_22   (Malo sina)   0
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   0
Oryza_sativa_v193   (Rice)   0
Setaria_italica_v164   (Foxtail millet)   0
Zea_mays_subsp._mays_   (Maize)   0
Zea_mays_v181   (Maize)   0
Sorghum_bicolor_   (Sorghum)   0
Musa_balbisiana   (Balbis banana)   0
Coccomyxa_subellipsoidea_sp._C-169_v2 0
Chlorella_vulgaris_ 0
Chlamydomonas_reinhardtii_4.0 0
Ostreococcus_lucimarinus_CCE9901_ 0
Cyanophora_paradoxa_ 0
Leishmania_mexicana_2.4 0
Ectocarpus_siliculosus 0
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_vexans_DAOM_BR484_22 0
Phytophthora_capsici_ 0
Phaeodactylum_tricornutumCCAP_1055/1 0
Fragilariopsis_cylindrus 0
Emiliania_huxleyi_CCMP1516_ 0
Leptolyngbya_sp._PCC_7376 0
Thermosynechococcus_elongatus_BP-1 0
Synechococcus_sp._CC9311 0
Gloeocapsa_sp._PCC_7428 0
Anabaena_sp._90 0
Blastococcus_saxobsidens_DD2 0
Kineococcus_radiotolerans_SRS30216 0
Catenulispora_acidiphila_DSM_44928 0
Stackebrandtia_nassauensis_DSM_44728 0
Frankia_symbiont_of_Datisca_glomerata 0
Frankia_sp._EAN1pec 0
Thermobifida_fusca_YX 0
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 0
Streptosporangium_roseum_DSM_43021 0
Kitasatospora_setae_KM-6054 0
Streptomyces_coelicolor_A3(2) 0
Streptomyces_flavogriseus_ATCC_33331 0
Streptomyces_sp._SirexAA-E 0
Streptomyces_griseus_subsp._griseus_NBRC_13350 0
Streptomyces_bingchenggensis_BCW-1 0
Streptomyces_avermitilis_MA-4680 0
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 0
Streptomyces_scabiei_87.22 0
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 0
Actinosynnema_mirum_DSM_43827 0
Saccharomonospora_viridis_DSM_43017 1
Pseudonocardia_dioxanivorans_CB1190 0
Saccharopolyspora_erythraea_NRRL_2338 0
Amycolatopsis_mediterranei_U32 1
Propionibacterium_propionicum_F0230a 0
Propionibacterium_acnes_SK137 0
Salinispora_arenicola_CNS-205 0
Actinoplanes_sp._N902-109 0
Actinoplanes_sp._SE50/110 0
Actinoplanes_missouriensis_431 0
Segniliparus_rotundus_DSM_44985 2
Tsukamurella_paurometabola_DSM_20162 0
Gordonia_sp._KTR9 1
Gordonia_polyisoprenivorans_VH2 0
Gordonia_bronchialis_DSM_43247 1
Rhodococcus_jostii_RHA1 0
Rhodococcus_equi_103S 1
Rhodococcus_opacus_B4 1
Rhodococcus_erythropolis_PR4 0
Nocardia_cyriacigeorgica_GUH-2 1
Nocardia_farcinica_IFM_10152 1
Amycolicicoccus_subflavus_DQS3-9A1 0
Mycobacterium_massiliense_str._GO_06 3
Mycobacterium_abscessus_ATCC_19977 3
Mycobacterium_sp._JLS 2
Mycobacterium_intracellulare_ATCC_13950 8
Mycobacterium_avium_104 6
Mycobacterium_vanbaalenii_PYR-1 1
Mycobacterium_canettii_CIPT_140010059 22
Mycobacterium_africanum_GM041182 25
Mycobacterium_tuberculosis_KZN_1435 27
Mycobacterium_tuberculosis 31
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 25
Mycobacterium_rhodesiae_NBB3 2
Mycobacterium_ulcerans_Agy99 11
Mycobacterium_gilvum_PYR-GCK 2
Mycobacterium_chubuense_NBB4 0
Mycobacterium_marinum_M 16
Mycobacterium_smegmatis_str._MC2_155 1
Mycobacterium_leprae_Br4923 5
Corynebacterium_aurimucosum_ATCC_700975 0
Beutenbergia_cavernae_DSM_12333 0
Xylanimonas_cellulosilytica_DSM_15894 0
[Cellvibrio]_gilvus_ATCC_13127 0
Arthrobacter_aurescens_TC1 0
Actinomyces_sp._F0330 0
Deinococcus_maricopensis_DSM_21211 0
Pelotomaculum_thermopropionicum_SI 0
Desulfotomaculum_carboxydivorans_CO-1-SRB 0
Carnobacterium_sp._17-4 0
Paenibacillus_sp._JDR-2 0
Chlorobium_chlorochromatii_CaD3 0
Chlamydophila_felis_Fe/C-56 0
Planctomyces_limnophilus_DSM_3776 0
Rhodopirellula_baltica_SH_1 0
Granulicella_mallensis_MP5ACTX8 0
Desulfovibrio_piezophilus 0
Geobacter_sp._M21 0
Geobacter_bemidjiensis_Bem 0
Geobacter_metallireducens_GS-15 0
Myxococcus_fulvus_HW-1 0
Dechloromonas_aromatica_RCB 0
Thauera_sp._MZ1T 0
Azoarcus_sp._BH72 0
Rubrivivax_gelatinosus_IL144 0
Burkholderia_phytofirmans_PsJN 0
Ralstonia_eutropha_JMP134 0
Cupriavidus_taiwanensis_LMG_19424 0
Cupriavidus_necator_N-1 0
Ralstonia_eutropha_H16 0
Ralstonia_solanacearum_CFBP2957 0
Burkholderia_glumae_BGR1 0
Delftia_sp._Cs1-4 0
Polaromonas_naphthalenivorans_CJ2 0
Acidovorax_sp._JS42 0
Acidovorax_citrulli_AAC00-1 0
Acidovorax_avenae_subsp._avenae_ATCC_19860 0
Comamonas_testosteroni_CNB-2 0
Bordetella_petrii_DSM_12804 0
Achromobacter_xylosoxidans 0
Novosphingobium_sp._PP1Y 0
Rhodospirillum_rubrum_F11 0
Azospirillum_brasilense_Sp245 0
Acidiphilium_multivorum_AIU301 0
Methylobacterium_extorquens_AM1 0
Methylobacterium_populi_BJ001 0
Methylobacterium_radiotolerans_JCM_2831 0
Rhizobium_leguminosarum_bv._viciae_3841 0
Agrobacterium_radiobacter_K84 0
Hyphomicrobium_denitrificans_ATCC_51888 0
Oligotropha_carboxidovorans_OM4 0
Bradyrhizobium_sp._ORS_278 0
Aeromonas_salmonicida_subsp._salmonicida_A449 0
Vibrio_cholerae_O395 0
Dichelobacter_nodosus_VCS1703A 0
Xanthomonas_axonopodis_pv._citri_str._306 0
Xanthomonas_albilineans_GPE_PC73 0
Xanthomonas_campestris_pv._campestris_str._B100 0
Pantoea_vagans_C9-1 0
Shigella_flexneri_5_str._8401 0
Shigella_dysenteriae_Sd197 0
Shigella_boydii_CDC_3083-94 0
Klebsiella_pneumoniae_NTUH-K2044 0
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 0
Pseudomonas_entomophila_L48 0
Pseudomonas_protegens_Pf-5 0
Pseudomonas_aeruginosa_UCBPP-PA14 0
Psychrobacter_arcticus_273-4 0
Methylophaga_sp._JAM1 0
Ferroglobus_placidus_DSM_10642 0
Halopiger_xanaduensis_SH-6 0
Natrinema_sp._J7-2 0
Haloarcula_hispanica_ATCC_33960 0
Haloarcula_marismortui_ATCC_43049 0
Methanocaldococcus_vulcanius_M7 0
Methanothermococcus_okinawensis_IH1 0

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Strains
Genome     Number
Paracoccidioides_brasiliensis_Pb01_ 0
Candida_albicans_WO-1_ 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   0
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   0
Oscillatoria_nigro-viridis_PCC_7112 0
Cyanothece_sp._PCC_7822 0
Nocardiopsis_alba_ATCC_BAA-2165 0
Streptomyces_albus_J1074 0
Streptomyces_davawensis_JCM_4913 0
Streptomyces_fulvissimus_DSM_40593 0
Streptomyces_venezuelae_ATCC_10712 0
Streptomyces_collinus_Tu_365 0
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 0
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 0
Saccharothrix_espanaensis_DSM_44229 0
Amycolatopsis_mediterranei_RB 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_orientalis_HCCB10007 1
Propionibacterium_acnes_ATCC_11828 0
Propionibacterium_acnes_TypeIA2_P.acn31 0
Propionibacterium_acnes_TypeIA2_P.acn17 0
Propionibacterium_acnes_TypeIA2_P.acn33 0
Propionibacterium_acnes_C1 0
Propionibacterium_acnes_HL096PA1 0
Propionibacterium_acnes_6609 0
Propionibacterium_acnes_266 0
Propionibacterium_acnes_KPA171202 0
Rhodococcus_pyridinivorans_SB3094 0
Rhodococcus_erythropolis_CCM2595 0
Nocardia_brasiliensis_ATCC_700358 1
Mycobacterium_sp._MOTT36Y 11
Mycobacterium_sp._JDM601 12
Mycobacterium_abscessus_subsp._bolletii_50594 3
Mycobacterium_liflandii_128FXT 16
Mycobacterium_sp._KMS 4
Mycobacterium_sp._MCS 3
Mycobacterium_yongonense_05-1390 14
Mycobacterium_intracellulare_MOTT-64 9
Mycobacterium_indicus_pranii_MTCC_9506 11
Mycobacterium_intracellulare_MOTT-02 8
Mycobacterium_avium_subsp._paratuberculosis_MAP4 6
Mycobacterium_avium_subsp._paratuberculosis_K-10 7
Mycobacterium_canettii_CIPT_140070017 24
Mycobacterium_canettii_CIPT_140060008 27
Mycobacterium_canettii_CIPT_140070008 29
Mycobacterium_canettii_CIPT_140070010 28
Mycobacterium_tuberculosis_EAI5/NITR206 30
Mycobacterium_tuberculosis_EAI5 23
Mycobacterium_tuberculosis_CAS/NITR204 44
Mycobacterium_tuberculosis_str._Beijing/NITR203 33
Mycobacterium_tuberculosis_UT205 22
Mycobacterium_tuberculosis_RGTB423 27
Mycobacterium_tuberculosis_RGTB327 34
Mycobacterium_tuberculosis_CTRI-2 26
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 29
Mycobacterium_tuberculosis_KZN_605 26
Mycobacterium_tuberculosis_KZN_4207 25
Mycobacterium_tuberculosis_CCDC5180 13
Mycobacterium_tuberculosis_CCDC5079 33
Mycobacterium_tuberculosis_CCDC5079 33
Mycobacterium_tuberculosis_H37Ra 26
Mycobacterium_tuberculosis_str._Haarlem/NITR202 35
Mycobacterium_tuberculosis_str._Haarlem 25
Mycobacterium_tuberculosis_F11 27
Mycobacterium_tuberculosis_H37Rv 27
Mycobacterium_tuberculosis_CDC1551 24
Mycobacterium_bovis_AF2122/97 26
Mycobacterium_bovis_BCG_str._Korea_1168P 26
Mycobacterium_bovis_BCG_str._Mexico 26
Mycobacterium_bovis_BCG_str._Tokyo_172 25
Mycobacterium_gilvum_Spyr1 1
Mycobacterium_smegmatis_str._MC2_155 1
Mycobacterium_leprae_TN 5
Mycobacterium_kansasii_ATCC_12478 27
Corynebacterium_terpenotabidum_Y-11 0
Bifidobacterium_thermophilum_RBL67 0
Actinomyces_viscosus_C505 0
Ruminococcus_champanellensis_18P13 0
Lactobacillus_paracasei_subsp._paracasei_8700:2 0
Lactobacillus_casei_W56 0
Lactobacillus_casei_LC2W 0
Lactobacillus_casei_BD-II 0
Lactobacillus_casei_BL23 0
Bacillus_cereus_AH187 0
Bacillus_cereus_Q1 0
Bacillus_cereus_NC7401 0
Chlamydia_pecorum_PV3056/3 0
Helicobacter_pylori_PeCan18 0
Helicobacter_pylori_Shi169 0
Helicobacter_pylori_Shi112 0
Helicobacter_pylori_Shi417 0
Helicobacter_pylori_Gambia94/24 0
Helicobacter_pylori_v225d 0
Sorangium_cellulosum_So0157-2 0
Anaeromyxobacter_sp._K 0
Ralstonia_solanacearum_FQY_4 0
Ralstonia_solanacearum_PSI07 0
Ralstonia_solanacearum_GMI1000 0
Burkholderia_thailandensis_MSMB121 0
Burkholderia_lata 0
Zymomonas_mobilis_subsp._pomaceae_ATCC_29192 0
Rhodobacter_sphaeroides_ATCC_17025 0
Rhodospirillum_rubrum_ATCC_11170 0
Oligotropha_carboxidovorans_OM5 0
Oligotropha_carboxidovorans_OM5 0
Rhodopseudomonas_palustris_DX-1 0
Rhodopseudomonas_palustris_HaA2 0
Rhodopseudomonas_palustris_BisB5 0
Bradyrhizobium_japonicum_USDA_6 0
Vibrio_cholerae_M66-2 0
Vibrio_cholerae_O395 0
Vibrio_cholerae_IEC224 0
Vibrio_cholerae_O1_str._2010EL-1786 0
Vibrio_cholerae_MJ-1236 0
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 0
Stenotrophomonas_maltophilia_D457 0
Xanthomonas_citri_subsp._citri_Aw12879 0
Xanthomonas_campestris_pv._vesicatoria_str._85-10 0
Xanthomonas_axonopodis_pv._citrumelo_F1 0
Xanthomonas_axonopodis_Xac29-1 0
Xanthomonas_campestris_pv._raphani_756C 0
Xanthomonas_campestris_pv._campestris_str._8004 0
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 0
Shigella_flexneri_2002017 0
Shigella_flexneri_2a_str._2457T 0
Shigella_flexneri_2a_str._301 0
Shigella_dysenteriae_1617 0
Shigella_boydii_Sb227 0
Klebsiella_pneumoniae_JM45 0
Klebsiella_pneumoniae_KCTC_2242 0
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 0
Escherichia_coli_E24377A 0
Escherichia_coli_E._coli_PMV-1 0
Escherichia_coli_LY180 0
Escherichia_coli_APEC_O78 0
Escherichia_coli_O7:K1_str._CE10 0
Escherichia_coli_str._'clone_D_i2' 0
Escherichia_coli_str._'clone_D_i14' 0
Escherichia_coli_UM146 0
Escherichia_coli_042 0
Escherichia_coli_Xuzhou21 0
Escherichia_coli_IHE3034 0
Escherichia_coli_UMNK88 0
Escherichia_coli_O83:H1_str._NRG_857C 0
Escherichia_coli_ABU_83972 0
Escherichia_coli_KO11FL 0
Escherichia_coli_KO11FL 0
Escherichia_coli_LF82 0
Escherichia_coli_IAI39 0
Escherichia_coli_UMN026 0
Escherichia_coli_S88 0
Escherichia_coli_IAI1 0
Escherichia_coli_W 0
Escherichia_coli_W 0
Escherichia_coli_DH1 0
Escherichia_coli_DH1 0
Escherichia_coli_ATCC_8739 0
Escherichia_coli_SMS-3-5 0
Escherichia_coli_SE11 0
Escherichia_coli_APEC_O1 0
Escherichia_coli_UTI89 0
Escherichia_coli_536 0
Escherichia_coli_O55:H7_str._RM12579 0
Escherichia_coli_O55:H7_str._CB9615 0
Escherichia_coli_CFT073 0
Escherichia_coli_O127:H6_str._E2348/69 0
Escherichia_coli_O157:H7_str._TW14359 0
Escherichia_coli_O157:H7_str._EC4115 0
Escherichia_coli_O157:H7_str._Sakai 0
Escherichia_coli_O157:H7_str._EDL933 0
Escherichia_coli_BW2952 0
Escherichia_coli_str._K-12_substr._MG1655 0
Escherichia_coli_str._K-12_substr._W3110 0
Escherichia_coli_str._K-12_substr._DH10B 0
Pseudomonas_syringae_pv._phaseolicola_1448A 0
Pseudomonas_protegens_CHA0 0
Pseudomonas_aeruginosa_SCV20265 0
Pseudomonas_aeruginosa_MTB-1 0
Pseudomonas_aeruginosa_LES431 0
Pseudomonas_aeruginosa_RP73 0
Pseudomonas_aeruginosa_B136-33 0
Pseudomonas_aeruginosa_PA1 0
Pseudomonas_aeruginosa_DK2 0
Pseudomonas_aeruginosa_NCGM2.S1 0
Pseudomonas_aeruginosa_M18 0
Pseudomonas_aeruginosa_LESB58 0
Pseudomonas_aeruginosa_PAO1 0
Natronomonas_moolapensis_8.8.11 0
Haloarcula_hispanica_N601 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   0
Macaca_mulatta_69_1   (Rhesus monkey)   0
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Otolemur_garnettii_69_3   (Small-eared galago)   0
Microcebus_murinus_69_1   (Gray mouse lemur)   0
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   0
Oryctolagus_cuniculus_69_2   (Rabbit)   0
Sus_scrofa_69_10.2   (Pig)   0
Mustela_putorius_furo_69_1.0   (Domestic ferret)   0
Equus_caballus_69_2   (Horse)   0
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Ornithorhynchus_anatinus_69_5   (Platypus)   0
Gadus_morhua_69_1   (Atlantic cod)   0

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Homo_sapiens__(NCBI_version)   (Human)   0
Loa_loa_v3.3_(Request)   (Eye worm)   0
Nicotiana_benthamiana_0.4.4_(Early_draft) 0
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 27
NCBI_plasmid_sequences_(Plasmids) 8
Protein_Data_Bank_(all_PDB_sequenc) 14
UniProt__viral_sequences_(Viral) 0
TargetDB__(Targets) 40
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 35
NCBI_viral_sequences_(Viral) 0
STRING_v9.0.5_(STRING) 277
Uniprot_2018_03_genome 3828
NCBI_2017_08_genome 168864
PDB_chains_(SCOP_1.75)_(PDB) 2

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.