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  Home > SCOP hierarchy > Domain combination - 143587

Domain combinations for 143587 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

143587 - SARS receptor-binding domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Tupaia_belangeri_76   (Northern tree shrew)   0
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   0
Ornithorhynchus_anatinus_76_5   (Platypus)   0
Saccoglossus_kowalevskii_v3.0 0
Lepisosteus_oculatus_76   (Spotted gar)   0
Gadus_morhua_76_1   (Atlantic cod)   0
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   0
Takifugu_rubripes_76_4   (Torafugu)   0
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   0
Oryzias_latipes_76_1   (Japanese medaka)   0
Poecilia_formosa_76   (Amazon molly)   0
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Danio_rerio_76_9   (Zebrafish)   0
Ciona_intestinalis_76   (Vase tunicate)   0
Lottia_gigantea_   (Owl limpet)   0
Helobdella_robusta_ 0
Capitella_sp._I_ 0
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Atta_cephalotes_v1.1 0
Drosophila_grimshawi_1.3 0
Drosophila_persimilis_1.3 0
Drosophila_virilis_1.2 0
Drosophila_mojavensis_1.3 0
Anopheles_gambiae_49_3j   (African malaria mosquito)   0
Acyrthosiphon_pisum_   (Pea aphid)   0
Daphnia_pulex_   (Common water flea)   0
Strigamia_maritima_22 0
Onchocerca_volvulus_22 0
Caenorhabditis_brenneri_ 0
Caenorhabditis_remanei_ 0
Caenorhabditis_elegans_76_235   (Roundworm)   0
Caenorhabditis_briggsae_2 0
Hymenolepis_microstoma_ 0
Hydra_vulgaris 0
Rhizomucor_miehei_CAU432_ 0
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 0
Melampsora_laricis-populina_ 0
Pisolithus_tinctorius_Marx_270_v1.0 0
Podospora_anserina_ 0
Trichoderma_reesei_1.2 0
Trichoderma_virens_Gv29-8_ 0
Cochliobolus_carbonum_26-R-13_v1.0 0
Zasmidium_cellare_ATCC_36951_v1.0 0
Aspergillus_fumigatus_Af293 0
Neosartorya_fischeri_NRRL_181_ 0
Aspergillus_oryzae_RIB40_ 0
Aspergillus_clavatus_NRRL_1_ 0
Candida_parapsilosis_ 0
Candida_guilliermondii_ATCC_6260_ 0
Catenaria_anguillulae_PL171_v1.0 0
Entamoeba_invadens_1.2 0
Selaginella_moellendorffii_ 0
Pinus_taeda   (Loblolly pine)   0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Medicago_truncatula_   (Barrel medic)   0
Malus_domestica_v196   (Apple)   0
Prunus_persica_v139   (Peach)   0
Linum_usitatissimum_v200   (Flax)   0
Populus_trichocarpa_v156   (Black cottonwood)   0
Mimulus_guttatus_v140   (Spotted monkey flower)   0
Musa_acuminata_22   (Wild Malaysian banana)   0
Phaeodactylum_tricornutumCCAP_1055/1 0
Tetrahymena_thermophila_SB210_1_ 0
Plasmodium_chabaudi_ 0
Trichomonas_vaginalis_ 0
Emiliania_huxleyi_CCMP1516_ 0
Mycoplasma_penetrans_HF-2 0
Carnobacterium_sp._WN1359 0
Brachyspira_murdochii_DSM_12563 0
Treponema_denticola_ATCC_35405 0
Campylobacter_hominis_ATCC_BAA-381 0
Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 0
Burkholderia_ambifaria_AMMD 0
Burkholderia_cenocepacia_HI2424 0
Thioalkalivibrio_sulfidophilus_HL-EbGr7 0
Yersinia_pseudotuberculosis_IP_31758 0
Fervidicoccus_fontis_Kam940 0
Aeropyrum_pernix_K1 0
Metallosphaera_cuprina_Ar-4 0
Metallosphaera_sedula_DSM_5348 0
Acidianus_hospitalis_W1 0
Sulfolobus_tokodaii_str._7 0
Sulfolobus_islandicus_Y.N.15.51 0
Sulfolobus_solfataricus_P2 0
Methanosphaerula_palustris_E1-9c 0
Methanoregula_boonei_6A8 0
Methanoplanus_petrolearius_DSM_11571 0
Methanoculleus_marisnigri_JR1 0

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Strains
Genome     Number
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0
Paracoccidioides_brasiliensis_Pb01_ 0
Aspergillus_fumigatus_A1163_ 0
Candida_albicans_WO-1_ 0
Chlamydia_trachomatis_C/TW-3 0
Chlamydia_trachomatis_A/5291 0
Chlamydia_trachomatis_A/363 0
Chlamydia_trachomatis_A2497 0
Chlamydia_trachomatis_A2497 0
Treponema_pedis_str._T_A4 0
Burkholderia_ambifaria_MC40-6 0
Burkholderia_cenocepacia_AU_1054 0
Candidatus_Liberibacter_americanus_str._Sao_Paulo 0
Pseudomonas_putida_ND6 0
Sulfolobus_islandicus_LAL14/1 0
Sulfolobus_islandicus_REY15A 0
Sulfolobus_islandicus_HVE10/4 0
Sulfolobus_islandicus_Y.G.57.14 0
Sulfolobus_islandicus_L.S.2.15 0
Sulfolobus_islandicus_M.16.27 0
Sulfolobus_islandicus_M.14.25 0
Sulfolobus_islandicus_M.16.4 0
Sulfolobus_islandicus_L.D.8.5 0
Sulfolobus_solfataricus_98/2 0
Methanoregula_formicica_Methanoregula_formicicum_SMSP 0
Archaeoglobus_sulfaticallidus_PM70-1 0
Thermococcus_sp._CL1 0

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Longest transcript per gene
Genome     Number
Tupaia_belangeri_69   (Northern tree shrew)   0
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   0
Ornithorhynchus_anatinus_69_5   (Platypus)   0
Gadus_morhua_69_1   (Atlantic cod)   0
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   0
Takifugu_rubripes_69_4   (Torafugu)   0
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   0
Oryzias_latipes_69_1   (Japanese medaka)   0
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0
Danio_rerio_69_9   (Zebrafish)   0
Ciona_intestinalis_69   (Vase tunicate)   0
Caenorhabditis_elegans_69_215   (Roundworm)   0

Others
Genome     Number
Loa_loa_v3.3_(Request)   (Eye worm)   0
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   0
Lotus_japonicus__(Early_assembly) 0
Malus_x_domestica_(Duplicate)   (Apple)   0
NCBI_plasmid_sequences_(Plasmids) 0
UniProt__viral_sequences_(Viral) 9
STRING_v9.0.5_(STRING) 0
Uniprot_2018_03_genome 30
TargetDB__(Targets) 0
Protozoadb_2010_08_(Protozoadb) 0
PDB_chains_(SCOP_1.75)_(PDB) 4
NCBI_viral_sequences_(Viral) 0
NCBI_2017_08_genome 0
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 118
Protein_Data_Bank_(all_PDB_sequenc) 59

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.