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  Home > SCOP hierarchy > Domain combination - 158436

Domain combinations for 158436 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

158436 - Ta0600-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Loxodonta_africana_76_3   (African savanna elephant)   0
Poecilia_formosa_76   (Amazon molly)   0
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   0
Lottia_gigantea_   (Owl limpet)   0
Helobdella_robusta_ 0
Bombyx_mori_   (Domestic silkworm)   0
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   0
Drosophila_willistoni_1.3 0
Megaselia_scalaris_22 0
Rhodnius_prolixus_22 0
Daphnia_pulex_   (Common water flea)   0
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   0
Caenorhabditis_elegans_76_235   (Roundworm)   0
Hymenolepis_microstoma_ 0
Taenia_solium_   (Pork tapeworm)   0
Mucor_circinelloides_ 0
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 0
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 0
Rhodotorula_graminis_WP1_v1.0 0
Sphaerobolus_stellatus_v1.0 0
Scleroderma_citrinum_Foug_A_v1.0 0
Coprinopsis_cinerea_okayama7_130_v3 0
Galerina_marginata_v1.0 0
Hebeloma_cylindrosporum_h7_v2.0 0
Laccaria_bicolor_S238N-H82_ 0
Tulasnella_calospora_AL13/4D_v1.0 0
Trametes_versicolor_v1.0 0
Tremella_mesenterica_   (Witches' butter)   0
Nectria_haematococca_mpVI_ 0
Trichoderma_atroviride_ 0
Trichoderma_harzianum_CBS_226.95_v1.0 0
Botrytis_cinerea_B05.10_ 0
Mycosphaerella_graminicola_IPO323_ 0
Penicillium_chrysogenum_Wisconsin_54-1255_ 0
Aspergillus_wentii_v1.0 0
Candida_tanzawaensis_NRRL_Y-17324__v1.0 0
Pichia_stipitis_CBS_6054_ 0
Debaromyces_hansenii 0
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 0
Candida_lusitaniae_ATCC_42720_ 0
Dictyostelium_purpureum_ 0
Picea_abies   (Norway spruce)   0
Gossypium_raimondii_v221 0
Capsella_rubella_v183 0
Arabidopsis_thaliana_10   (Thale cress)   0
Medicago_truncatula_   (Barrel medic)   0
Linum_usitatissimum_v200   (Flax)   0
Solanum_tuberosum_   (Potato)   0
Actinidia_chinensis_Hongyang_ 0
Aquilegia_coerulea_v195 0
Oryza_punctata_22 0
Panicum_virgatum_v202   (Switchgrass)   0
Musa_acuminata_22   (Wild Malaysian banana)   0
Bigelowiella_natans_CCMP2755_22 0
Cyanophora_paradoxa_ 0
Trypanosoma_cruzi_strain_CL_Brener 0
Albugo_laibachii_22 0
Phytophthora_capsici_ 0
Fragilariopsis_cylindrus 0
Paramecium_tetraurelia_ 0
Symbiodinium_minutum_clade_B1_v1.2 0
Trichomonas_vaginalis_ 0
Rivularia_sp._PCC_7116 0
Calothrix_sp._PCC_7507 0
Anabaena_sp._90 0
Frankia_symbiont_of_Datisca_glomerata 0
Rhodococcus_jostii_RHA1 0
Clostridium_thermocellum_ATCC_27405 0
Dehalobacter_sp._DCA 0
Eubacterium_rectale_M104/1 0
Clostridium_beijerinckii_NCIMB_8052 0
Tepidanaerobacter_acetatoxydans_Re1 0
Lactobacillus_kefiranofaciens_ZW3 0
Lactobacillus_helveticus_DPC_4571 0
Listeria_welshimeri_serovar_6b_str._SLCC5334 0
Bacillus_thuringiensis_str._Al_Hakam 0
Bacillus_cereus_03BB102 0
Bacillus_anthracis_str._A0248 0
Bacillus_pseudofirmus_OF4 0
Bacillus_cellulosilyticus_DSM_2522 0
Gemmatimonas_aurantiaca_T-27 0
Sulfurimonas_autotrophica_DSM_16294 0
Thiomonas_arsenitoxydans 0
Burkholderia_phymatum_STM815 0
Zymomonas_mobilis_subsp._mobilis_NCIMB_11163 0
Paracoccus_denitrificans_PD1222 0
Candidatus_Rickettsia_amblyommii_str._GAT-30V 0
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 0
Mesorhizobium_opportunistum_WSM2075 0
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 0
Pelagibacterium_halotolerans_B2 0
Cellvibrio_japonicus_Ueda107 0
Tolumonas_auensis_DSM_9187 0
Psychromonas_ingrahamii_37 0
Shewanella_piezotolerans_WP3 0
Shewanella_halifaxensis_HAW-EB4 0
Shewanella_sediminis_HAW-EB3 0
Shewanella_pealeana_ATCC_700345 0
Marinobacter_sp._BSs20148 0
Candidatus_Caldiarchaeum_subterraneum 1
Cenarchaeum_symbiosum_A 1
Candidatus_Nitrosopumilus_sp._AR2 1
Nitrosopumilus_maritimus_SCM1 1
Candidatus_Korarchaeum_cryptofilum_OPF8 1
Acidilobus_saccharovorans_345-15 1
Fervidicoccus_fontis_Kam940 1
Pyrolobus_fumarii_1A 1
Hyperthermus_butylicus_DSM_5456 1
Thermogladius_cellulolyticus_1633 1
Ignisphaera_aggregans_DSM_17230 1
Aeropyrum_pernix_K1 1
Ignicoccus_hospitalis_KIN4/I 1
Thermosphaera_aggregans_DSM_11486 1
Staphylothermus_hellenicus_DSM_12710 1
Staphylothermus_marinus_F1 1
Desulfurococcus_fermentans_DSM_16532 1
Desulfurococcus_kamchatkensis_1221n 1
Desulfurococcus_mucosus_DSM_2162 1
Metallosphaera_cuprina_Ar-4 1
Metallosphaera_sedula_DSM_5348 1
Acidianus_hospitalis_W1 1
Sulfolobus_tokodaii_str._7 1
Sulfolobus_islandicus_Y.N.15.51 1
Sulfolobus_solfataricus_P2 1
Sulfolobus_acidocaldarius_DSM_639 1
Thermofilum_sp._1910b 1
Thermofilum_pendens_Hrk_5 1
Vulcanisaeta_moutnovskia_768-28 1
Vulcanisaeta_distributa_DSM_14429 1
Caldivirga_maquilingensis_IC-167 1
Methanocella_arvoryzae_MRE50 1
Methanocella_conradii_HZ254 1
Methanocella_paludicola_SANAE 1
Methanosaeta_harundinacea_6Ac 1
Methanosaeta_thermophila_PT 1
Methanosaeta_concilii_GP6 1
Methanosalsum_zhilinae_DSM_4017 1
Methanohalobium_evestigatum_Z-7303 1
Methanococcoides_burtonii_DSM_6242 1
Methanosarcina_acetivorans_C2A 1
Methanosarcina_mazei_Go1 1
Methanosarcina_barkeri_str._Fusaro 1
Methanohalophilus_mahii_DSM_5219 1
Methanosphaerula_palustris_E1-9c 1
Methanoregula_boonei_6A8 1
Methanospirillum_hungatei_JF-1 1
Methanocorpusculum_labreanum_Z 1
Methanoplanus_petrolearius_DSM_11571 1
Methanoculleus_bourgensis_MS2 1
Methanoculleus_marisnigri_JR1 1
Methanopyrus_kandleri_AV19 0
Ferroglobus_placidus_DSM_10642 1
Archaeoglobus_profundus_DSM_5631 1
Archaeoglobus_veneficus_SNP6 1
Archaeoglobus_fulgidus_DSM_4304 1
Thermococcus_sp._4557 1
Thermococcus_onnurineus_NA1 1
Thermococcus_kodakarensis_KOD1 1
Thermococcus_gammatolerans_EJ3 1
Thermococcus_sibiricus_MM_739 1
Thermococcus_barophilus_MP 1
Pyrococcus_sp._ST04 1
Pyrococcus_yayanosii_CH1 1
Pyrococcus_horikoshii_OT3 1
Pyrococcus_abyssi_GE5 0
Pyrococcus_furiosus_COM1 1
Thermoplasmatales_archaeon_BRNA1 1
Thermoplasma_volcanium_GSS1 1
Thermoplasma_acidophilum_DSM_1728 1
Picrophilus_torridus_DSM_9790 1
Methanotorris_igneus_Kol_5 1
Methanocaldococcus_sp._FS406-22 1
Methanocaldococcus_fervens_AG86 1
Methanocaldococcus_vulcanius_M7 1
methanocaldococcus_infernus_ME 1
Methanocaldococcus_jannaschii_DSM_2661 1
Methanothermococcus_okinawensis_IH1 1
Methanococcus_aeolicus_Nankai-3 1
Methanococcus_maripaludis_C5 1
Methanococcus_voltae_A3 1
Methanococcus_vannielii_SB 1
Methanothermus_fervidus_DSM_2088 1
Methanothermobacter_marburgensis_str._Marburg 1
Methanothermobacter_thermautotrophicus_str._Delta_H 1
Methanosphaera_stadtmanae_DSM_3091 1
Methanobrevibacter_sp._AbM4 1
Methanobrevibacter_ruminantium_M1 1
Methanobrevibacter_smithii_ATCC_35061 1
Complete_genome_sequence_of_Methanobacterium_sp._Mb1 1
Aciduliprofundum_sp._MAR08-339 1
Aciduliprofundum_boonei_T469 1

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Strains
Genome     Number
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0
Coccidioides_posadasii_str._Silveira_ 0
Cyanothece_sp._PCC_7822 0
Cylindrospermum_stagnale_PCC_7417 0
Anabaena_cylindrica_PCC_7122 0
Frankia_sp._CcI3 0
Mycobacterium_canettii_CIPT_140070010 0
Corynebacterium_terpenotabidum_Y-11 0
Clostridium_thermocellum_DSM_1313 0
Lactobacillus_helveticus_R0052 0
Lactococcus_lactis_subsp._cremoris_A76 0
Lactococcus_lactis_subsp._cremoris_SK11 0
Streptococcus_suis_D12 0
Streptococcus_suis_JS14 0
Bacillus_thuringiensis_serovar_finitimus_YBT-020 0
Bacillus_cereus_FRI-35 0
Bacillus_cereus_biovar_anthracis_str._CI 0
Bacillus_cereus_AH820 0
Bacillus_cereus_AH187 0
Bacillus_cereus_Q1 0
Bacillus_cereus_F837/76 0
Bacillus_cereus_NC7401 0
Bacillus_cereus_E33L 0
Bacillus_anthracis_str._H9401 0
Bacillus_anthracis_str._CDC_684 0
Bacillus_anthracis_str._'Ames_Ancestor' 0
Bacillus_anthracis_str._Sterne 0
Bacillus_anthracis_str._Ames 0
Desulfobacula_toluolica_Tol2 0
Zymomonas_mobilis_subsp._mobilis_ATCC_29191 0
Zymomonas_mobilis_subsp._mobilis_CP4 0
Zymomonas_mobilis_subsp._mobilis_ATCC_10988 0
Zymomonas_mobilis_subsp._mobilis_ZM4 0
Rhizobium_tropici_CIAT_899 0
Rhizobium_leguminosarum_bv._trifolii_WSM1325 0
Vibrio_nigripulchritudo_VibrioScope 0
Pseudomonas_stutzeri_RCH2 0
Candidatus_Nitrososphaera_gargensis_Ga9.2 1
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 1
Caldisphaera_lagunensis_DSM_15908 1
Aeropyrum_camini_SY1_=_JCM_12091 1
Sulfolobus_islandicus_LAL14/1 1
Sulfolobus_islandicus_REY15A 1
Sulfolobus_islandicus_HVE10/4 1
Sulfolobus_islandicus_Y.G.57.14 1
Sulfolobus_islandicus_L.S.2.15 1
Sulfolobus_islandicus_M.16.27 1
Sulfolobus_islandicus_M.14.25 1
Sulfolobus_islandicus_M.16.4 1
Sulfolobus_islandicus_L.D.8.5 1
Sulfolobus_solfataricus_98/2 1
Sulfolobus_acidocaldarius_SUSAZ 1
Sulfolobus_acidocaldarius_Ron12/I 1
Sulfolobus_acidocaldarius_N8 1
Methanomethylovorans_hollandica_DSM_15978 1
Methanolobus_psychrophilus_R15 1
Methanosarcina_mazei_Tuc01 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1
Archaeoglobus_sulfaticallidus_PM70-1 1
Thermococcus_sp._AM4 1
Thermococcus_sp._CL1 1
Thermococcus_litoralis_DSM_5473 1
Pyrococcus_sp._NA2 1
Pyrococcus_furiosus_DSM_3638 1
Candidatus_Methanomethylophilus_alvus_Mx1201 1
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 1
Ferroplasma_acidarmanus_fer1 1
Methanococcus_maripaludis_X1 1
Methanococcus_maripaludis_C6 1
Methanococcus_maripaludis_C7 1
Methanococcus_maripaludis_S2 1
Methanobacterium_sp._SWAN-1 1

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Longest transcript per gene
Genome     Number
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   0
Loxodonta_africana_69_3   (African savanna elephant)   0
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   0
Caenorhabditis_elegans_69_215   (Roundworm)   0
Arabidopsis_thaliana_10   (Thale cress)   0

Others
Genome     Number
Loa_loa_v3.3_(Request)   (Eye worm)   0
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   0
Lotus_japonicus__(Early_assembly) 0
Ricinus_communis__(Early_assembly)   (Castor bean)   0
NCBI_plasmid_sequences_(Plasmids) 0
Protein_Data_Bank_(all_PDB_sequenc) 5
UniProt__viral_sequences_(Viral) 0
NCBI_viral_sequences_(Viral) 0
TargetDB__(Targets) 13
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 15
STRING_v9.0.5_(STRING) 53
PDB_chains_(SCOP_1.75)_(PDB) 2
Protozoadb_2010_08_(Protozoadb) 0
NCBI_2017_08_genome 439
Uniprot_2018_03_genome 799

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.