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  Home > SCOP hierarchy > Domain combination - 158560

Domain combinations for 158560 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

158560 - BH3980-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Canis_familiaris_76_3.1   (Dog)   0
Felis_catus_76_6.2   (Domestic cat)   0
Equus_caballus_76_2   (Horse)   0
Erinaceus_europaeus_76   (Western European hedgehog)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   0
Macropus_eugenii_76_1.0   (Tammar wallaby)   0
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   0
Ornithorhynchus_anatinus_76_5   (Platypus)   0
Petromyzon_marinus_76_7.0   (Sea lamprey)   0
Meleagris_gallopavo_76_2   (Turkey)   0
Gallus_gallus_76_4   (Chicken)   0
Anas_platyrhynchos_76_1.0   (Mallard)   0
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   0
Anolis_carolinensis_76_2.0   (Green anole)   0
Latimeria_chalumnae_76_1   (Coelacanth)   0
Lepisosteus_oculatus_76   (Spotted gar)   0
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   0
Takifugu_rubripes_76_4   (Torafugu)   0
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   0
Oryzias_latipes_76_1   (Japanese medaka)   0
Poecilia_formosa_76   (Amazon molly)   0
Oreochromis_niloticus_76_1.0   (Nile tilapia)   0
Astyanax_mexicanus_76   (Mexican tetra)   0
Danio_rerio_76_9   (Zebrafish)   0
Oikopleura_dioica 0
Crassostrea_gigas_22   (Pacific oyster)   0
Helobdella_robusta_ 0
Bombyx_mori_   (Domestic silkworm)   0
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   0
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Camponotus_floridanus_v3.3   (Florida carpenter ant)   0
Drosophila_grimshawi_1.3 0
Drosophila_willistoni_1.3 0
Drosophila_yakuba_1.3 0
Drosophila_melanogaster_76_5   (Fruit fly)   0
Drosophila_erecta_1.3 0
Drosophila_mojavensis_1.3 0
Tribolium_castaneum_3.0   (Red flour beetle)   0
Rhodnius_prolixus_22 0
Tetranychus_urticae_   (Two-spotted spider mite)   0
Onchocerca_volvulus_22 0
Caenorhabditis_japonica_ 0
Caenorhabditis_brenneri_ 0
Schistosoma_mansoni_ 0
Hydra_vulgaris 0
Amphimedon_queenslandica 0
Phycomyces_blakesleeanus_ 0
Rhizopus_oryzae_RA_99-880_ 0
Paxillus_rubicundulus_Ve08.2h10_v1.0 0
Pisolithus_tinctorius_Marx_270_v1.0 0
Tremella_mesenterica_   (Witches' butter)   0
Nectria_haematococca_mpVI_ 0
Trichoderma_asperellum_CBS_433.97_v1.0 0
Trichoderma_atroviride_ 0
Trichoderma_virens_Gv29-8_ 0
Trichoderma_harzianum_CBS_226.95_v1.0 0
Mycosphaerella_graminicola_IPO323_ 0
Dothistroma_septosporum 0
Aspergillus_zonatus_v1.0 0
Candida_albicans_SC5314 0
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 0
Kluyveromyces_thermotolerans_CBS_6340 0
Saccharomyces_mikatae_MIT 0
Saccharomyces_paradoxus_MIT 0
Saccharomyces_cerevisiae_76   (Baker's yeast)   0
Dictyostelium_purpureum_ 0
Entamoeba_dispar_1.2 0
Entamoeba_invadens_1.2 0
Entamoeba_histolytica_1 0
Picea_abies   (Norway spruce)   0
Eucalyptus_grandis_v201   (Rose gum)   0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   0
Gossypium_raimondii_v221 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Carica_papaya_   (Papaya)   0
Medicago_truncatula_   (Barrel medic)   0
Glycine_max_v109   (Soybean)   0
Prunus_persica_v139   (Peach)   0
Vitis_vinifera_   (Wine grape)   0
Mimulus_guttatus_v140   (Spotted monkey flower)   0
Solanum_tuberosum_   (Potato)   0
Actinidia_chinensis_Hongyang_ 0
Sorghum_bicolor_   (Sorghum)   0
Musa_balbisiana   (Balbis banana)   0
Physcomitrella_patens 0
Phytophthora_capsici_ 0
Perkinsus_marinus_ATCC_50983_ 0
Paramecium_tetraurelia_ 0
Tetrahymena_thermophila_SB210_1_ 0
Ichthyophthirius_multifiliis_strain_G5_ 0
Cryptosporidium_hominis 0
Cryptosporidium_muris 0
Cryptosporidium_parvum_Iowa_II 0
Babesia_bovis_T2Bo_ 0
Plasmodium_knowlesi_strain_H_ 0
Plasmodium_yoelii_ssp._yoelii_1_ 0
Naegleria_gruberi_ 0
Trichomonas_vaginalis_ 0
Guillardia_theta_CCMP2712_v1.0_ 0
Synechococcus_sp._PCC_7502 0
Prochlorococcus_marinus_str._MIT_9515 0
Microcoleus_sp._PCC_7113 0
Anabaena_sp._90 0
Eggerthella_lenta_DSM_2243 0
Thermobispora_bispora_DSM_43833 0
Modestobacter_marinus 0
Streptosporangium_roseum_DSM_43021 3
Kitasatospora_setae_KM-6054 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 2
Kribbella_flavida_DSM_17836 2
Microlunatus_phosphovorus_NM-1 1
Micromonospora_sp._L5 1
Micromonospora_aurantiaca_ATCC_27029 1
Gordonia_polyisoprenivorans_VH2 1
Beutenbergia_cavernae_DSM_12333 1
Arthrobacter_chlorophenolicus_A6 1
Arthrobacter_aurescens_TC1 1
Arthrobacter_sp._Rue61a 1
Deinococcus_gobiensis_I-0 0
Anaerococcus_prevotii_DSM_20548 0
Clostridium_clariflavum_DSM_19732 0
Clostridium_cellulolyticum_H10 0
Faecalibacterium_prausnitzii 0
Thermaerobacter_marianensis_DSM_12885 0
Oscillibacter_valericigenes_Sjm18-20 0
butyrate-producing_bacterium_SM4/1 0
Desulfosporosinus_orientis_DSM_765 0
Dehalobacter_sp._DCA 2
Dehalobacter_sp._CF 2
Desulfitobacterium_hafniense_Y51 0
Desulfitobacterium_dehalogenans_ATCC_51507 0
Desulfotomaculum_reducens_MI-1 0
Acetobacterium_woodii_DSM_1030 0
Clostridium_difficile_630 0
Clostridium_phytofermentans_ISDg 0
Clostridium_lentocellum_DSM_5427 0
Eubacterium_rectale_M104/1 0
Alkaliphilus_oremlandii_OhILAs 0
Alkaliphilus_metalliredigens_QYMF 0
Candidatus_Arthromitus_sp._SFB-mouse-Japan 1
Clostridium_sp._BNL1100 2
Clostridium_kluyveri_DSM_555 3
Clostridium_cellulovorans_743B 3
Clostridium_botulinum_A_str._ATCC_3502 0
Clostridium_acetobutylicum_ATCC_824 0
Thermoanaerobacterium_thermosaccharolyticum_DSM_571 0
Thermoanaerobacter_tengcongensis_MB4 0
Carnobacterium_sp._17-4 0
Carnobacterium_sp._WN1359 0
Aerococcus_urinae_ACS-120-V-Col10a 0
Tetragenococcus_halophilus_NBRC_12172 0
Melissococcus_plutonius_DAT561 0
Enterococcus_sp._7L76 1
Enterococcus_hirae_ATCC_9790 0
Enterococcus_faecium_Aus0004 0
Enterococcus_faecalis_62 1
Oenococcus_oeni_PSU-1 0
Leuconostoc_sp._C2 0
Leuconostoc_kimchii_IMSNU_11154 0
Leuconostoc_citreum_KM20 0
Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293 0
Leuconostoc_gasicomitatum_LMG_18811 0
Lactobacillus_casei_ATCC_334 0
Lactobacillus_rhamnosus_Lc_705 0
Lactobacillus_ruminis_ATCC_27782 0
Lactobacillus_fermentum_IFO_3956 0
Lactobacillus_sakei_subsp._sakei_23K 0
Lactobacillus_reuteri_DSM_20016 0
Lactobacillus_plantarum_JDM1 0
Lactobacillus_helveticus_DPC_4571 0
Lactobacillus_brevis_ATCC_367 0
Pediococcus_claussenii_ATCC_BAA-344 0
Pediococcus_pentosaceus_ATCC_25745 0
Lactococcus_garvieae_ATCC_49156 2
Lactococcus_lactis_subsp._cremoris_MG1363 2
Streptococcus_sp._I-P16 0
Streptococcus_sp._I-G2 0
Streptococcus_intermedius_JTH08 0
Streptococcus_gallolyticus_UCN34 0
Streptococcus_pseudopneumoniae_IS7493 0
Streptococcus_pasteurianus_ATCC_43144 0
Streptococcus_equi_subsp._equi_4047 0
Streptococcus_dysgalactiae_subsp._equisimilis_GGS_124 0
Streptococcus_infantarius_subsp._infantarius_CJ18 1
Streptococcus_macedonicus_ACA-DC_198 0
Streptococcus_mitis_B6 0
Streptococcus_parasanguinis_ATCC_15912 0
Streptococcus_pyogenes_str._Manfredo 0
Streptococcus_pneumoniae_P1031 0
Streptococcus_agalactiae_A909 0
Streptococcus_mutans_NN2025 0
Streptococcus_suis_P1/7 0
Streptococcus_gordonii_str._Challis_substr._CH1 0
Exiguobacterium_sp._MH3 1
Exiguobacterium_sp._AT1b 0
Kyrpidia_tusciae_DSM_2912 0
Brevibacillus_brevis_NBRC_100599 0
Paenibacillus_sp._JDR-2 2
Paenibacillus_mucilaginosus_3016 4
Paenibacillus_polymyxa_M1 0
Listeria_welshimeri_serovar_6b_str._SLCC5334 1
Listeria_innocua_Clip11262 1
Listeria_seeligeri_serovar_1/2b_str._SLCC3954 1
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 1
Listeria_ivanovii_subsp._ivanovii_PAM_55 1
Geobacillus_thermoglucosidasius_C56-YS93 0
Lysinibacillus_sphaericus_C3-41 0
Oceanobacillus_iheyensis_HTE831 1
Anoxybacillus_flavithermus_WK1 0
Geobacillus_sp._WCH70 0
Halobacillus_halophilus_DSM_2266 1
Bacillus_atrophaeus_1942 0
Bacillus_licheniformis_DSM_13_=_ATCC_14580 0
Bacillus_halodurans_C-125 3
Bacillus_weihenstephanensis_KBAB4 1
Bacillus_thuringiensis_str._Al_Hakam 0
Bacillus_cereus_03BB102 1
Bacillus_anthracis_str._A0248 1
Bacillus_clausii_KSM-K16 0
Bacillus_cellulosilyticus_DSM_2522 1
Bacillus_megaterium_DSM_319 0
Bacillus_coagulans_2-6 0
Staphylococcus_pseudintermedius_HKU10-03 0
Staphylococcus_saprophyticus_subsp._saprophyticus_ATCC_15305 0
Staphylococcus_lugdunensis_HKU09-01 0
Staphylococcus_haemolyticus_JCSC1435 0
Staphylococcus_epidermidis_RP62A 0
Staphylococcus_carnosus_subsp._carnosus_TM300 0
Staphylococcus_aureus_subsp._aureus_JH1 0
Staphylococcus_aureus 0
Niastella_koreensis_GR20-10 0
Flexibacter_litoralis_DSM_6794 0
Leadbetterella_byssophila_DSM_17132 0
Odoribacter_splanchnicus_DSM_20712 0
Bacteroides_thetaiotaomicron_VPI-5482 0
Parachlamydia_acanthamoebae_UV-7 0
Brachyspira_hyodysenteriae_WA1 0
Borrelia_afzelii_PKo 0
Treponema_azotonutricium_ZAS-9 0
Treponema_denticola_ATCC_35405 0
Thermodesulfobacterium_sp._OPB45 0
Calditerrivibrio_nitroreducens_DSM_19672 0
Marinitoga_piezophila_KA3 0
Kosmotoga_olearia_TBF_19.5.1 0
Thermodesulfovibrio_yellowstonii_DSM_11347 0
Streptobacillus_moniliformis_DSM_12112 0
Candidatus_Saccharimonas_aalborgensis 0
Campylobacter_hominis_ATCC_BAA-381 0
uncultured_Sulfuricurvum_sp._RIFRC-1 0
Helicobacter_cetorum_MIT_00-7128 0
Desulfomonile_tiedjei_DSM_6799 0
Burkholderia_phytofirmans_PsJN 0
Burkholderia_phymatum_STM815 0
Burkholderia_xenovorans_LB400 0
Ralstonia_eutropha_JMP134 0
Cupriavidus_taiwanensis_LMG_19424 0
Cupriavidus_metallidurans_CH34 0
Ralstonia_eutropha_H16 0
Ralstonia_pickettii_12D 0
Ralstonia_solanacearum_CFBP2957 0
Burkholderia_sp._RPE64 0
Burkholderia_sp._CCGE1002 0
Burkholderia_thailandensis_E264 0
Burkholderia_mallei_SAVP1 0
Burkholderia_ambifaria_AMMD 0
Burkholderia_cenocepacia_HI2424 0
Burkholderia_multivorans_ATCC_17616 0
Burkholderia_vietnamiensis_G4 0
Burkholderia_gladioli_BSR3 0
Burkholderia_glumae_BGR1 0
Delftia_sp._Cs1-4 0
Sphingomonas_sp._MM-1 0
Candidatus_Pelagibacter_sp._IMCC9063 0
Sinorhizobium_meliloti_AK83 0
Rhizobium_leguminosarum_bv._viciae_3841 0
Teredinibacter_turnerae_T7901 0
Shewanella_piezotolerans_WP3 0
Shewanella_woodyi_ATCC_51908 0
Shewanella_violacea_DSS12 0
Marinomonas_posidonica_IVIA-Po-181 0
Desulfurococcus_mucosus_DSM_2162 0
Sulfolobus_tokodaii_str._7 0
Methanocella_conradii_HZ254 0
Methanosarcina_barkeri_str._Fusaro 0
Methanohalophilus_mahii_DSM_5219 0
Archaeoglobus_veneficus_SNP6 0
Thermococcus_sibiricus_MM_739 0

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Strains
Genome     Number
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   0
Candida_albicans_WO-1_ 0
Saccharomyces_cerevisiae_UC5 0
Saccharomyces_cerevisiae_CBS7960 0
Saccharomyces_cerevisiae_YJM269 0
Saccharomyces_cerevisiae_T7 0
Saccharomyces_cerevisiae_Vin13 0
Saccharomyces_cerevisiae_LalvinQA23 0
Saccharomyces_cerevisiae_Sigma1278b 0
Saccharomyces_cerevisiae_W303 0
Saccharomyces_cerevisiae_JAY291 0
Saccharomyces_cerevisiae_AWRI1631 0
Saccharomyces_cerevisiae_T73 0
Saccharomyces_cerevisiae_CLIB215 0
Saccharomyces_cerevisiae_Y10 0
Saccharomyces_cerevisiae_YJM789_ 0
Saccharomyces_cerevisiae_YJM789 0
Saccharomyces_cerevisiae_RM11-1a 0
Saccharomyces_cerevisiae_RM11-1a_ 0
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   0
Synechococcus_sp._CC9605 0
Synechococcus_sp._PCC_7002 0
Anabaena_cylindrica_PCC_7122 0
Gordonibacter_pamelaeae_7-10-1-b 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 2
Saccharothrix_espanaensis_DSM_44229 2
Amycolatopsis_orientalis_HCCB10007 2
Propionibacterium_acidipropionici_ATCC_4875 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 0
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 0
[Eubacterium]_cylindroides_[Eubacterium]_cylindroides_T2-87 0
Desulfosporosinus_meridiei_DSM_13257 0
Desulfitobacterium_dichloroeliminans_LMG_P-21439 1
Desulfitobacterium_hafniense_DCB-2 2
Clostridium_difficile_BI1 0
Clostridium_difficile_R20291 0
Clostridium_difficile_CD196 0
Candidatus_Arthromitus_sp._SFB-mouse-Yit 1
Clostridium_saccharobutylicum_DSM_13864 0
Clostridium_autoethanogenum_DSM_10061 0
Clostridium_kluyveri_NBRC_12016 3
Clostridium_tetani_genome_12124569 0
Clostridium_pasteurianum_BC1 0
Clostridium_botulinum_H04402_065 0
Clostridium_botulinum_F_str._230613 0
Clostridium_botulinum_F_str._Langeland 0
Clostridium_botulinum_E3_str._Alaska_E43 2
Clostridium_botulinum_B1_str._Okra 0
Clostridium_botulinum_Ba4_str._657 0
Clostridium_botulinum_A2_str._Kyoto 0
Clostridium_botulinum_A3_str._Loch_Maree 0
Clostridium_botulinum_A_str._Hall 0
Clostridium_botulinum_A_str._ATCC_19397 0
Clostridium_acetobutylicum_DSM_1731 0
Clostridium_acetobutylicum_EA_2018 0
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 0
Thermoanaerobacterium_thermosaccharolyticum_M0795 0
Halobacteroides_halobius_DSM_5150 0
Carnobacterium_maltaromaticum_LMA28 1
Melissococcus_plutonius_ATCC_35311 0
Enterococcus_mundtii_QU_25 0
Enterococcus_casseliflavus_EC20 0
Enterococcus_faecium_Aus0085 0
Enterococcus_faecium_NRRL_B-2354 0
Enterococcus_faecium_DO 0
Enterococcus_faecalis_str._Symbioflor_1 1
Enterococcus_faecalis_D32 1
Enterococcus_faecalis_OG1RF 1
Enterococcus_faecalis_V583 1
Leuconostoc_carnosum_JB16 0
Leuconostoc_mesenteroides_subsp._mesenteroides_J18 0
Leuconostoc_gelidum_JB7 0
Lactobacillus_paracasei_subsp._paracasei_8700:2 0
Lactobacillus_casei_LOCK919 0
Lactobacillus_casei_W56 0
Lactobacillus_casei_LC2W 0
Lactobacillus_casei_BD-II 0
Lactobacillus_casei_BL23 0
Lactobacillus_casei_str._Zhang 0
Lactobacillus_rhamnosus_LOCK908 0
Lactobacillus_rhamnosus_LOCK900 0
Lactobacillus_rhamnosus_ATCC_8530 0
Lactobacillus_rhamnosus_GG 0
Lactobacillus_rhamnosus_GG 0
Lactobacillus_fermentum_F-6 0
Lactobacillus_fermentum_CECT_5716 0
Lactobacillus_reuteri_TD1 0
Lactobacillus_reuteri_I5007 0
Lactobacillus_reuteri_JCM_1112 0
Lactobacillus_reuteri_SD2112 0
Lactobacillus_plantarum_16 0
Lactobacillus_plantarum_ZJ316 0
Lactobacillus_plantarum_subsp._plantarum_ST-III 0
Lactobacillus_plantarum_subsp._plantarum_P-8 0
Lactobacillus_plantarum_WCFS1 0
Lactobacillus_helveticus_R0052 0
Lactobacillus_helveticus_H10 0
Lactobacillus_helveticus_CNRZ32 0
Lactobacillus_delbrueckii_subsp._bulgaricus_ND02 0
Lactobacillus_brevis_KB290 0
Lactobacillus_acidophilus_La-14 0
Lactobacillus_acidophilus_NCFM 0
Pediococcus_pentosaceus_SL4 0
Lactococcus_garvieae_Lg2 2
Lactococcus_lactis_subsp._lactis_KLDS_4.0325 1
Lactococcus_lactis_subsp._lactis_IO-1 2
Lactococcus_lactis_subsp._lactis_CV56 2
Lactococcus_lactis_subsp._lactis_KF147 2
Lactococcus_lactis_subsp._lactis_Il1403 2
Lactococcus_lactis_subsp._cremoris_KW2 2
Lactococcus_lactis_subsp._cremoris_UC509.9 2
Lactococcus_lactis_subsp._cremoris_A76 2
Lactococcus_lactis_subsp._cremoris_NZ9000 2
Lactococcus_lactis_subsp._cremoris_SK11 2
Streptococcus_constellatus_subsp._pharyngis_C1050 0
Streptococcus_constellatus_subsp._pharyngis_C818 0
Streptococcus_constellatus_subsp._pharyngis_C232 0
Streptococcus_anginosus_C238 0
Streptococcus_anginosus_C1051 0
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_BAA-2069 0
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_43143 0
Streptococcus_lutetiensis_033 0
Streptococcus_equi_subsp._zooepidemicus_ATCC_35246 0
Streptococcus_equi_subsp._zooepidemicus_MGCS10565 0
Streptococcus_equi_subsp._zooepidemicus 0
Streptococcus_dysgalactiae_subsp._equisimilis_AC-2713 0
Streptococcus_dysgalactiae_subsp._equisimilis_ATCC_12394 0
Streptococcus_dysgalactiae_subsp._equisimilis_RE378 0
Streptococcus_oligofermentans_AS_1.3089 0
Streptococcus_iniae_SF1 0
Streptococcus_parasanguinis_FW213 0
Streptococcus_pyogenes_HSC5 0
Streptococcus_pyogenes_A20 0
Streptococcus_pyogenes_MGAS1882 0
Streptococcus_pyogenes_MGAS15252 0
Streptococcus_pyogenes_Alab49 0
Streptococcus_pyogenes_MGAS10750 0
Streptococcus_pyogenes_MGAS10270 0
Streptococcus_pyogenes_MGAS2096 0
Streptococcus_pyogenes_MGAS9429 0
Streptococcus_pyogenes_MGAS6180 0
Streptococcus_pyogenes_NZ131 0
Streptococcus_pyogenes_MGAS8232 0
Streptococcus_pyogenes_MGAS10394 0
Streptococcus_pyogenes_MGAS315 0
Streptococcus_pyogenes_SSI-1 0
Streptococcus_pyogenes_M1_476 0
Streptococcus_pyogenes_MGAS5005 0
Streptococcus_pyogenes_M1_GAS 0
Streptococcus_pneumoniae_A026 0
Streptococcus_pneumoniae_ST556 0
Streptococcus_pneumoniae_SPNA45 0
Streptococcus_pneumoniae_SPN994039 0
Streptococcus_pneumoniae_SPN994038 0
Streptococcus_pneumoniae_SPN034183 0
Streptococcus_pneumoniae_SPN034156 0
Streptococcus_pneumoniae_INV104 0
Streptococcus_pneumoniae_INV200 0
Streptococcus_pneumoniae_OXC141 0
Streptococcus_pneumoniae_gamPNI0373 0
Streptococcus_pneumoniae_AP200 0
Streptococcus_pneumoniae_ATCC_700669 0
Streptococcus_pneumoniae_TCH8431/19A 0
Streptococcus_pneumoniae_CGSP14 0
Streptococcus_pneumoniae_G54 0
Streptococcus_pneumoniae_JJA 0
Streptococcus_pneumoniae_70585 0
Streptococcus_pneumoniae_Hungary19A-6 0
Streptococcus_pneumoniae_Taiwan19F-14 0
Streptococcus_pneumoniae_D39 0
Streptococcus_pneumoniae_670-6B 0
Streptococcus_pneumoniae_R6 0
Streptococcus_pneumoniae_TIGR4 0
Streptococcus_agalactiae_ILRI112 0
Streptococcus_agalactiae_ILRI005 0
Streptococcus_agalactiae_09mas018883 0
Streptococcus_agalactiae_2-22 0
Streptococcus_agalactiae_SA20-06 0
Streptococcus_agalactiae_GD201008-001 0
Streptococcus_agalactiae_NEM316 0
Streptococcus_agalactiae_2603V/R 0
Streptococcus_mutans_GS-5 0
Streptococcus_mutans_LJ23 0
Streptococcus_mutans_UA159 0
Streptococcus_suis_T15 0
Streptococcus_suis_TL13 0
Streptococcus_suis_SC070731 0
Streptococcus_suis_S735 0
Streptococcus_suis_ST3 0
Streptococcus_suis_D9 0
Streptococcus_suis_SS12 0
Streptococcus_suis_D12 0
Streptococcus_suis_ST1 0
Streptococcus_suis_A7 0
Streptococcus_suis_JS14 0
Streptococcus_suis_BM407 0
Streptococcus_suis_SC84 0
Streptococcus_suis_GZ1 0
Streptococcus_suis_98HAH33 0
Streptococcus_suis_05ZYH33 0
Paenibacillus_sp._Y412MC10 3
Paenibacillus_mucilaginosus_KNP414 2
Paenibacillus_mucilaginosus_K02 0
Paenibacillus_polymyxa_CR1 0
Paenibacillus_polymyxa_SC2 0
Paenibacillus_polymyxa_E681 0
Listeria_monocytogenes_EGD_sequence 1
Listeria_monocytogenes_N53-1 1
Listeria_monocytogenes_La111 1
Listeria_monocytogenes_serotype_4b_str._LL195 1
Listeria_monocytogenes_07PF0776 1
Listeria_monocytogenes_M7 1
Listeria_monocytogenes_J1-220 1
Listeria_monocytogenes_J1816 1
Listeria_monocytogenes_SLCC2376 1
Listeria_monocytogenes_SLCC5850 1
Listeria_monocytogenes_ATCC_19117 1
Listeria_monocytogenes_L312 1
Listeria_monocytogenes_SLCC2479 1
Listeria_monocytogenes_SLCC7179 1
Listeria_monocytogenes_SLCC2540 1
Listeria_monocytogenes_SLCC2378 1
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 1
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 1
Listeria_monocytogenes_serotype_7_str._SLCC2482 1
Listeria_monocytogenes_08-5578 1
Listeria_monocytogenes_08-5923 1
Listeria_monocytogenes_L99 1
Listeria_monocytogenes_HCC23 1
Listeria_monocytogenes_10403S 1
Listeria_monocytogenes_J0161 1
Listeria_monocytogenes_Finland_1998 1
Listeria_monocytogenes_FSL_R2-561 1
Listeria_monocytogenes_serotype_4b_str._F2365 1
Listeria_monocytogenes_EGD-e 1
Geobacillus_sp._Y4.1MC1 0
Amphibacillus_xylanus_NBRC_15112 0
Bacillus_amyloliquefaciens_LFB112 0
Bacillus_amyloliquefaciens_Y2 0
Bacillus_licheniformis_9945A 0
Bacillus_subtilis_subsp._spizizenii_str._W23 0
Bacillus_licheniformis_DSM_13_=_ATCC_14580 0
Bacillus_infantis_NRRL_B-14911 1
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 0
Bacillus_toyonensis_BCT-7112 1
Bacillus_thuringiensis_HD-771 1
Bacillus_thuringiensis_HD-789 1
Bacillus_thuringiensis_MC28 2
Bacillus_thuringiensis_serovar_chinensis_CT-43 1
Bacillus_thuringiensis_YBT-1518 1
Bacillus_thuringiensis_Bt407 1
Bacillus_thuringiensis_serovar_konkukian_str._97-27 1
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 1
Bacillus_thuringiensis_BMB171 1
Bacillus_thuringiensis_serovar_finitimus_YBT-020 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1
Bacillus_cereus_FRI-35 1
Bacillus_cereus_biovar_anthracis_str._CI 1
Bacillus_cereus_AH820 1
Bacillus_cereus_AH187 1
Bacillus_cereus_B4264 1
Bacillus_cereus_G9842 1
Bacillus_cereus_Q1 1
Bacillus_cereus_F837/76 1
Bacillus_cereus_NC7401 1
Bacillus_cereus_E33L 1
Bacillus_cereus_ATCC_14579 1
Bacillus_cereus_ATCC_10987 1
Bacillus_anthracis_str._H9401 1
Bacillus_anthracis_str._CDC_684 1
Bacillus_anthracis_str._'Ames_Ancestor' 1
Bacillus_anthracis_str._Sterne 1
Bacillus_anthracis_str._Ames 1
Bacillus_megaterium_WSH-002 1
Bacillus_megaterium_QM_B1551 1
Bacillus_coagulans_36D1 2
Staphylococcus_aureus_subsp._aureus_MSHR1132 0
Staphylococcus_pseudintermedius_ED99 0
Staphylococcus_pasteuri_SP1 0
Staphylococcus_lugdunensis_N920143 0
Staphylococcus_warneri_SG1 0
Staphylococcus_epidermidis_ATCC_12228 0
Staphylococcus_aureus_CA-347 0
Staphylococcus_aureus_Bmb9393 0
Staphylococcus_aureus_M1 0
Staphylococcus_aureus_08BA02176 0
Staphylococcus_aureus_ST228/18412 0
Staphylococcus_aureus_ST228/18341 0
Staphylococcus_aureus_ST228/16125 0
Staphylococcus_aureus_ST228/16035 0
Staphylococcus_aureus_ST228/15532 0
Staphylococcus_aureus_ST228/10497 0
Staphylococcus_aureus_ST228/10388 0
Staphylococcus_aureus_04-02981 0
Staphylococcus_aureus_RF122 0
Staphylococcus_aureus_subsp._aureus_Z172 0
Staphylococcus_aureus_subsp._aureus_6850 0
Staphylococcus_aureus_subsp._aureus_SA957 0
Staphylococcus_aureus_subsp._aureus_CN1 0
Staphylococcus_aureus_subsp._aureus_SA40 0
Staphylococcus_aureus_subsp._aureus_11819-97 0
Staphylococcus_aureus_subsp._aureus_M013 0
Staphylococcus_aureus_subsp._aureus_HO_5096_0412 0
Staphylococcus_aureus_subsp._aureus_VC40 0
Staphylococcus_aureus_subsp._aureus_T0131 0
Staphylococcus_aureus_subsp._aureus_LGA251 0
Staphylococcus_aureus_subsp._aureus_ECT-R_2 0
Staphylococcus_aureus_subsp._aureus_JKD6159 0
Staphylococcus_aureus_subsp._aureus_ED133 0
Staphylococcus_aureus_subsp._aureus_ED98 0
Staphylococcus_aureus_subsp._aureus_TW20 0
Staphylococcus_aureus_subsp._aureus_55/2053 0
Staphylococcus_aureus_subsp._aureus_TCH60 0
Staphylococcus_aureus_subsp._aureus_str._JKD6008 0
Staphylococcus_aureus_subsp._aureus_71193 0
Staphylococcus_aureus_subsp._aureus_S0385 0
Staphylococcus_aureus_subsp._aureus_str._Newman 0
Staphylococcus_aureus_subsp._aureus_Mu3 0
Staphylococcus_aureus_subsp._aureus_USA300_TCH1516 0
Staphylococcus_aureus_subsp._aureus_USA300_FPR3757 0
Staphylococcus_aureus_subsp._aureus_JH9 0
Staphylococcus_aureus_subsp._aureus_MSSA476 0
Staphylococcus_aureus_subsp._aureus_MRSA252 0
Staphylococcus_aureus_subsp._aureus_MW2 0
Staphylococcus_aureus_subsp._aureus_N315 0
Staphylococcus_aureus_subsp._aureus_Mu50 0
Staphylococcus_aureus_subsp._aureus_COL 0
Staphylococcus_aureus_subsp._aureus_NCTC_8325 0
Emticicia_oligotrophica_DSM_17448 0
Borrelia_afzelii_PKo 0
Campylobacter_jejuni_Waterborne_C.jejuni_Outbreak 0
Campylobacter_jejuni_subsp._jejuni_00-2544 0
Campylobacter_jejuni_subsp._jejuni_00-2538 0
Campylobacter_jejuni_subsp._jejuni_00-2426 0
Campylobacter_jejuni_subsp._jejuni_00-2425 0
Campylobacter_jejuni_subsp._jejuni_ICDCCJ07001 0
Campylobacter_jejuni_subsp._jejuni_M1 0
Campylobacter_jejuni_subsp._jejuni_81116 0
Campylobacter_jejuni_subsp._jejuni_NCTC_11168-BN148 0
Campylobacter_jejuni_subsp._jejuni_NCTC_11168_=_ATCC_700819 0
Campylobacter_coli_15-537360 0
Campylobacter_coli_CVM_N29710 0
Myxococcus_stipitatus_DSM_14675 1
Burkholderia_phenoliruptrix_BR3459a 0
Pandoraea_pnomenusa_3kgm 0
Ralstonia_pickettii_12J 0
Ralstonia_solanacearum_FQY_4 0
Ralstonia_solanacearum_Po82 0
Ralstonia_solanacearum_PSI07 0
Ralstonia_solanacearum_CMR15 0
Ralstonia_solanacearum_GMI1000 0
Burkholderia_sp._YI23 0
Burkholderia_sp._CCGE1003 0
Burkholderia_sp._CCGE1001 0
Burkholderia_sp._KJ006 0
Burkholderia_thailandensis_MSMB121 0
Burkholderia_mallei_ATCC_23344 0
Burkholderia_lata 0
Burkholderia_ambifaria_MC40-6 0
Burkholderia_cenocepacia_MC0-3 0
Burkholderia_cenocepacia_AU_1054 0
Burkholderia_cenocepacia_J2315 0
Burkholderia_multivorans_ATCC_17616 0
Burkholderia_cepacia_GG4 0
Bradyrhizobium_sp._BTAi1 0
Proteus_mirabilis_BB2000 0
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 0
Pseudomonas_stutzeri_RCH2 0
Sulfolobus_islandicus_L.S.2.15 0
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Canis_familiaris_69_3.1   (Dog)   0
Equus_caballus_69_2   (Horse)   0
Erinaceus_europaeus_69   (Western European hedgehog)   0
Macropus_eugenii_69_1.0   (Tammar wallaby)   0
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   0
Ornithorhynchus_anatinus_69_5   (Platypus)   0
Petromyzon_marinus_69_7.0   (Sea lamprey)   0
Meleagris_gallopavo_69_2   (Turkey)   0
Gallus_gallus_69_2   (Chicken)   0
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   0
Latimeria_chalumnae_69_1   (Coelacanth)   0
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   0
Takifugu_rubripes_69_4   (Torafugu)   0
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   0
Oryzias_latipes_69_1   (Japanese medaka)   0
Oreochromis_niloticus_69_1.0   (Nile tilapia)   0
Danio_rerio_69_9   (Zebrafish)   0
Drosophila_melanogaster_69_5   (Fruit fly)   0
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   0

Others
Genome     Number
Heliconius_numata__(Incomplete) 0
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   0
Moniliophthora_perniciosa_FA553__(Genome_survey) 0
Encephalitozoon_cuniculi_(endoparasite) 0
Picea_sitchensis__(Incomplete)   (Sitka spruce)   0
Lotus_japonicus__(Early_assembly) 0
Nicotiana_benthamiana_0.4.4_(Early_draft) 0
Phoenix_dactylifera__(Early_draft)   (Date palm)   0
NCBI_plasmid_sequences_(Plasmids) 5
PDB_chains_(SCOP_1.75)_(PDB) 3
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 12
Protozoadb_2010_08_(Protozoadb) 0
TargetDB__(Targets) 19
STRING_v9.0.5_(STRING) 56
Uniprot_2018_03_genome 1702
NCBI_2017_08_genome 5284
Protein_Data_Bank_(all_PDB_sequenc) 4
UniProt__viral_sequences_(Viral) 0
NCBI_viral_sequences_(Viral) 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.