SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 53474,53474 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

53474 - alpha/beta-Hydrolases
53474 - alpha/beta-Hydrolases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   0
Macaca_mulatta_76_1   (Rhesus monkey)   0
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   0
Microcebus_murinus_76_1   (Gray mouse lemur)   1
Rattus_norvegicus_76_5.0   (Norway rat)   1
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   4
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Oryctolagus_cuniculus_76_2   (Rabbit)   1
Ochotona_princeps_76   (American pika)   10
Tupaia_belangeri_76   (Northern tree shrew)   2
Sus_scrofa_76_10.2   (Pig)   0
Bos_taurus_76_3.1   (Cattle)   1
Vicugna_pacos_76_1   (Alpaca)   6
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Felis_catus_76_6.2   (Domestic cat)   0
Pteropus_vampyrus_76_1   (Large flying fox)   3
Sorex_araneus_76_1   (European shrew)   4
Erinaceus_europaeus_76   (Western European hedgehog)   3
Procavia_capensis_76_1   (Cape rock hyrax)   0
Loxodonta_africana_76_3   (African savanna elephant)   1
Echinops_telfairi_76   (Small Madagascar hedgehog)   4
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   0
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   2
Macropus_eugenii_76_1.0   (Tammar wallaby)   5
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1
Saccoglossus_kowalevskii_v3.0 3
Gallus_gallus_76_4   (Chicken)   0
Latimeria_chalumnae_76_1   (Coelacanth)   1
Lepisosteus_oculatus_76   (Spotted gar)   0
Gadus_morhua_76_1   (Atlantic cod)   1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1
Takifugu_rubripes_76_4   (Torafugu)   0
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   0
Oryzias_latipes_76_1   (Japanese medaka)   0
Poecilia_formosa_76   (Amazon molly)   2
Astyanax_mexicanus_76   (Mexican tetra)   1
Danio_rerio_76_9   (Zebrafish)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   2
Adineta_vaga 1
Crassostrea_gigas_22   (Pacific oyster)   3
Capitella_sp._I_ 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   3
Heliconius_melpomene_   (Postman butterfly)   6
Bombyx_mori_   (Domestic silkworm)   4
Nasonia_vitripennis_   (Jewel wasp)   5
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   2
Linepithema_humile_v1.1   (Argentine ant)   5
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   4
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   2
Atta_cephalotes_v1.1 4
Camponotus_floridanus_v3.3   (Florida carpenter ant)   5
Lucilia_cuprina   (Australian sheep blowfly)   3
Drosophila_grimshawi_1.3 3
Drosophila_willistoni_1.3 1
Drosophila_pseudoobscura_2.13 0
Drosophila_persimilis_1.3 0
Drosophila_suzukii 3
Drosophila_yakuba_1.3 1
Drosophila_simulans_1.3 0
Drosophila_sechellia_1.3 3
Drosophila_melanogaster_76_5   (Fruit fly)   1
Drosophila_erecta_1.3 2
Drosophila_ananassae_1.3 1
Drosophila_virilis_1.2 1
Drosophila_mojavensis_1.3 1
Megaselia_scalaris_22 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1
Anopheles_darlingi_22   (American malaria mosquito)   1
Anopheles_gambiae_49_3j   (African malaria mosquito)   4
Tribolium_castaneum_3.0   (Red flour beetle)   5
Acyrthosiphon_pisum_   (Pea aphid)   4
Rhodnius_prolixus_22 1
Daphnia_pulex_   (Common water flea)   1
Strigamia_maritima_22 6
Sarcoptes_scabiei 0
Tetranychus_urticae_   (Two-spotted spider mite)   0
Pristionchus_pacificus_ 5
Meloidogyne_incognita_   (Southern root-knot nematode)   0
Onchocerca_volvulus_22 0
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   2
Caenorhabditis_japonica_ 0
Caenorhabditis_brenneri_ 1
Caenorhabditis_remanei_ 0
Caenorhabditis_elegans_76_235   (Roundworm)   0
Caenorhabditis_briggsae_2 0
Trichinella_spiralis_22 0
Hymenolepis_microstoma_ 0
Echinococcus_multilocularis_ 0
Echinococcus_granulosus_ 0
Taenia_solium_   (Pork tapeworm)   0
Schistosoma_mansoni_ 1
Mnemiopsis_leidyi   (Sea walnut)   1
Acropora_digitifera_v1.0 4
Nematostella_vectensis_1.0   (Starlet sea anemone)   0
Amphimedon_queenslandica 1
Trichoplax_adhaerens_ 1
Proterospongia_sp._ATCC_50818_ 1
Monosiga_brevicollis_ 2
Sphaeroforma_arctica_JP610_ 1
Capsaspora_owczarzaki_ATCC_30864_ 0
Mortierella_verticillata_NRRL_6337_ 0
Sporisorium_reilianum_22 1
Ustilago_maydis_ 0
Melampsora_laricis-populina_ 1
Rhodotorula_graminis_WP1_v1.0 0
Microbotryum_violaceum_22 1
Sphaerobolus_stellatus_v1.0 8
Piloderma_croceum_F_1598_v1.0 1
Serpula_lacrymans_var._lacrymans_S7.9_ 2
Coniophora_puteana 1
Hydnomerulius_pinastri_v2.0 3
Paxillus_rubicundulus_Ve08.2h10_v1.0 1
Pisolithus_microcarpus_441_v1.0 0
Pisolithus_tinctorius_Marx_270_v1.0 0
Coprinopsis_cinerea_okayama7_130_v3 1
Pleurotus_ostreatus_   (Oyster mushroom)   2
Amanita_thiersii_Skay4041_v1.0 0
Amanita_muscaria_Koide_v1.0   (Fly agaric)   2
Galerina_marginata_v1.0 2
Agaricus_bisporus_var._bisporus_ 1
Schizophyllum_commune_ 3
Stereum_hirsutum_FP-91666_SS1__v1.0 2
Heterobasidion_annosum_ 1
Gloeophyllum_trabeumv1.0 4
Punctularia_strigosozonata_v1.0 2
Sebacina_vermifera_MAFF_305830_v1.0 5
Tulasnella_calospora_AL13/4D_v1.0 3
Postia_placenta_ 1
Wolfiporia_cocos_MD-104_SS10__v1.0 0
Phanerochaete_chrysosporium_RP-78_2.1 3
Dichomitus_squalens 1
Trametes_versicolor_v1.0 0
Tremella_mesenterica_   (Witches' butter)   0
Daldinia_eschscholzii_EC12_v1.0 4
Apiospora_montagnei_NRRL_25634_v1.0 9
Magnaporthe_grisea_70-15_ 4
Podospora_anserina_ 7
Sporotrichum_thermophile_ATCC_42464_ 3
Thielavia_terrestris_NRRL_8126_ 3
Chaetomium_globosum_CBS_148.51_ 5
Neurospora_tetrasperma_ 4
Neurospora_discreta_FGSC_8579_ 4
Neurospora_crassa_OR74A_ 4
Cryphonectria_parasitica_   (Chestnut blight fungus)   2
Verticillium_albo-atrum_VaMs.102_ 4
Verticillium_dahliae_VdLs.17_ 5
Acremonium_alcalophilumv_1.0 0
Glomerella_graminicola_22 5
Fusarium_graminearum_ 3
Nectria_haematococca_mpVI_ 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 4
Fusarium_verticillioides_7600_ 3
Trichoderma_asperellum_CBS_433.97_v1.0 1
Trichoderma_atroviride_ 1
Trichoderma_citrinoviride_v1.0 0
Trichoderma_virens_Gv29-8_ 0
Trichoderma_harzianum_CBS_226.95_v1.0 0
Amorphotheca_resinae_v1.0   (Creosote fungus)   0
Botrytis_cinerea_B05.10_ 1
Sclerotinia_sclerotiorum_ 3
Didymella_exigua_CBS_183.55_v1.0 1
Leptosphaeria_maculans_22 2
Setosphaeria_turcica_v1.0 3
Cochliobolus_miyabeanus_ATCC_44560_v1.0 3
Cochliobolus_victoriae_FI3_v1.0 2
Cochliobolus_carbonum_26-R-13_v1.0 2
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   3
Alternaria_brassicicola_ 2
Cochliobolus_lunatus_m118_v2.0 4
Pyrenophora_teres_f._teres_22 2
Pyrenophora_tritici-repentis_ 1
Stagonospora_nodorum_ 5
Mycosphaerella_graminicola_IPO323_ 1
Zasmidium_cellare_ATCC_36951_v1.0 2
Dothistroma_septosporum 0
Septoria_musiva_v1.0 0
Mycosphaerella_fijiensis_CIRAD86_ 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1
Coccidioides_posadasii_RMSCC_3488_ 0
Coccidioides_immitis_RS_ 0
Ajellomyces_dermatitidis_SLH14081_ 2
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 2
Trichophyton_equinum_CBS_127.97_ 1
Trichophyton_verrucosum_HKI_0517_ 1
Arthroderma_benhamiae_CBS_112371_ 1
Aspergillus_zonatus_v1.0 0
Penicillium_chrysogenum_v1.0 0
Aspergillus_acidus_v1.0 2
Aspergillus_fumigatus_Af293 1
Aspergillus_brasiliensis_v1.0 2
Aspergillus_nidulans_FGSC_A4_ 1
Aspergillus_sydowii_v1.0 2
Aspergillus_versicolor_v1.0 2
Aspergillus_glaucus 0
Aspergillus_carbonarius_ITEM_5010_ 1
Neosartorya_fischeri_NRRL_181_ 2
Aspergillus_terreus_NIH2624_ 1
Aspergillus_tubingensis_v1.0 2
Aspergillus_oryzae_RIB40_ 2
Aspergillus_niger_22 2
Aspergillus_niger_ATCC_1015_ 0
Aspergillus_flavus_NRRL3357_ 3
Aspergillus_clavatus_NRRL_1_ 2
Penicillium_marneffei_ATCC_18224_ 2
Lachancea_kluyveri_ 0
Saccharomyces_mikatae_MIT 0
Saccharomyces_paradoxus_MIT 0
Allomyces_macrogynus_ATCC_38327_ 0
Spizellomyces_punctatus_DAOM_BR117_ 1
Dictyostelium_purpureum_ 1
Selaginella_moellendorffii_ 1
Pinus_taeda   (Loblolly pine)   36
Picea_abies   (Norway spruce)   7
Eucalyptus_grandis_v201   (Rose gum)   1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   3
Gossypium_raimondii_v221 2
Citrus_clementina_v165 1
Citrus_sinensis_v154   (Sweet orange)   2
Thellungiella_halophila_v173 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2
Capsella_rubella_v183 1
Arabidopsis_lyrata_   (Lyrate rockcress)   3
Carica_papaya_   (Papaya)   0
Medicago_truncatula_   (Barrel medic)   1
Phaseolus_vulgaris_v186   (French bean)   0
Glycine_max_v109   (Soybean)   1
Fragaria_vesca_   (Wild strawberry)   6
Malus_domestica_v196   (Apple)   5
Linum_usitatissimum_v200   (Flax)   4
Populus_trichocarpa_v156   (Black cottonwood)   1
Vitis_vinifera_   (Wine grape)   6
Mimulus_guttatus_v140   (Spotted monkey flower)   2
Solanum_lycopersicum_v.2.3   (Tomato)   2
Solanum_tuberosum_   (Potato)   5
Actinidia_chinensis_Hongyang_ 6
Aquilegia_coerulea_v195 2
Triticum_urartu_22 3
Aegilops_tauschii_22 3
Brachypodium_distachyon_   (Stiff brome)   4
Oryza_barthii_22   (African wild rice)   9
Oryza_meridionalis_22 16
Oryza_glumaepatula_22 12
Oryza_punctata_22 11
Oryza_nivara_22 18
Oryza_brachyantha_22   (Malo sina)   1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   1
Oryza_sativa_v193   (Rice)   1
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   3
Setaria_italica_v164   (Foxtail millet)   1
Zea_mays_subsp._mays_   (Maize)   2
Zea_mays_v181   (Maize)   2
Sorghum_bicolor_   (Sorghum)   2
Musa_balbisiana   (Balbis banana)   2
Musa_acuminata_22   (Wild Malaysian banana)   3
Physcomitrella_patens 0
Coccomyxa_subellipsoidea_sp._C-169_v2 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 1
Chlorella_vulgaris_ 2
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 0
Chlamydomonas_reinhardtii_4.0 1
Ostreococcus_tauri_ 0
Bathycoccus_prasinos_ 0
Micromonas_sp._RCC299_ 0
Bigelowiella_natans_CCMP2755_22 3
Giardia_lamblia_2.3 0
Leishmania_major_strain_Friedlin_ 0
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 0
Ectocarpus_siliculosus 1
Aureococcus_anophagefferens_ 0
Pythium_iwayamai_DAOM_BR242034_22 1
Pythium_arrhenomanes_ATCC_12531_22 6
Pythium_ultimum_v1.7-2 0
Pythium_aphanidermatum_DAOM_BR444_22 1
Pythium_irregulare_DAOM_BR486_22 1
Pythium_vexans_DAOM_BR484_22 4
Phytophthora_ramorum_1.1   (Sudden oak death agent)   5
Phytophthora_sojae_1.1 5
Phytophthora_infestans_T30-4_ 4
Phytophthora_capsici_ 5
Hyaloperonospora_arabidopsidis_22 0
Fragilariopsis_cylindrus 0
Thalassiosira_pseudonana_CCMP1335 0
Perkinsus_marinus_ATCC_50983_ 1
Tetrahymena_thermophila_SB210_1_ 0
Ichthyophthirius_multifiliis_strain_G5_ 2
Neospora_caninum 0
Toxoplasma_gondii_VEG 0
Toxoplasma_gondii_ME49 0
Toxoplasma_gondii_GT1 0
Theileria_parva__ 1
Plasmodium_vivax_SaI-1_7.0 0
Plasmodium_yoelii_ssp._yoelii_1_ 0
Plasmodium_chabaudi_ 0
Symbiodinium_minutum_clade_B1_v1.2 4
Naegleria_gruberi_ 1
Guillardia_theta_CCMP2712_v1.0_ 0
Emiliania_huxleyi_CCMP1516_ 2
Thermobispora_bispora_DSM_43833 0
Nakamurella_multipartita_DSM_44233 3
Acidothermus_cellulolyticus_11B 0
Catenulispora_acidiphila_DSM_44928 1
Thermobifida_fusca_YX 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 1
Thermomonospora_curvata_DSM_43183 1
Streptosporangium_roseum_DSM_43021 0
Kitasatospora_setae_KM-6054 2
Streptomyces_coelicolor_A3(2) 2
Streptomyces_sp._PAMC26508 2
Streptomyces_flavogriseus_ATCC_33331 2
Streptomyces_griseus_subsp._griseus_NBRC_13350 3
Streptomyces_bingchenggensis_BCW-1 1
Streptomyces_violaceusniger_Tu_4113 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Streptomyces_scabiei_87.22 0
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1
Actinosynnema_mirum_DSM_43827 0
Saccharomonospora_viridis_DSM_43017 1
Saccharopolyspora_erythraea_NRRL_2338 1
Amycolatopsis_mediterranei_U32 4
Kribbella_flavida_DSM_17836 1
Nocardioides_sp._JS614 1
Microlunatus_phosphovorus_NM-1 1
Verrucosispora_maris_AB-18-032 1
Micromonospora_sp._L5 1
Micromonospora_aurantiaca_ATCC_27029 1
Actinoplanes_sp._N902-109 0
Actinoplanes_sp._SE50/110 1
Actinoplanes_missouriensis_431 1
Tsukamurella_paurometabola_DSM_20162 1
Gordonia_bronchialis_DSM_43247 1
Rhodococcus_jostii_RHA1 2
Rhodococcus_opacus_B4 1
Rhodococcus_erythropolis_PR4 1
Amycolicicoccus_subflavus_DQS3-9A1 0
Mycobacterium_vanbaalenii_PYR-1 1
Mycobacterium_gilvum_PYR-GCK 0
Corynebacterium_kroppenstedtii_DSM_44385 1
Tropheryma_whipplei_TW08/27 1
Beutenbergia_cavernae_DSM_12333 1
Cellulomonas_flavigena_DSM_20109 0
Cellulomonas_fimi_ATCC_484 0
Arthrobacter_aurescens_TC1 1
Kocuria_rhizophila_DC2201 2
Rothia_mucilaginosa_DY-18 1
Arthrobacter_sp._FB24 1
Bifidobacterium_dentium_Bd1 1
Arcanobacterium_haemolyticum_DSM_20595 1
Herpetosiphon_aurantiacus_DSM_785 0
Deinococcus_deserti_VCD115 1
Meiothermus_ruber_DSM_1279 1
Acidaminococcus_fermentans_DSM_20731 1
Faecalibacterium_prausnitzii 0
Roseburia_hominis_A2-183 0
Roseburia_intestinalis 0
Clostridium_acetobutylicum_ATCC_824 1
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 1
Streptococcus_dysgalactiae_subsp._equisimilis_GGS_124 1
Paenibacillus_mucilaginosus_3016 2
Bacillus_pseudofirmus_OF4 0
Bacillus_megaterium_DSM_319 0
Haliscomenobacter_hydrossis_DSM_1100 0
Saprospira_grandis_str._Lewin 1
Chitinophaga_pinensis_DSM_2588 0
Cyclobacterium_marinum_DSM_745 3
Leadbetterella_byssophila_DSM_17132 1
Spirosoma_linguale_DSM_74 0
Bacteroides_vulgatus_ATCC_8482 1
Pedobacter_saltans_DSM_12145 1
Pedobacter_heparinus_DSM_2366 1
Flavobacterium_johnsoniae_UW101 1
Isosphaera_pallida_ATCC_43644 0
Planctomyces_brasiliensis_DSM_5305 1
Rhodopirellula_baltica_SH_1 0
Pirellula_staleyi_DSM_6068 1
Treponema_azotonutricium_ZAS-9 1
Treponema_primitia_ZAS-2 0
Petrotoga_mobilis_SJ95 0
Thermotoga_sp._RQ2 0
Thermotoga_naphthophila_RKU-10 0
Thermotoga_petrophila_RKU-1 1
Thermotoga_maritima_MSB8 0
Candidatus_Solibacter_usitatus_Ellin6076 0
Granulicella_mallensis_MP5ACTX8 1
Terriglobus_roseus_DSM_18391 1
Desulfobulbus_propionicus_DSM_2032 0
Desulfatibacillum_alkenivorans_AK-01 1
Geobacter_daltonii_FRC-32 0
Geobacter_metallireducens_GS-15 0
Haliangium_ochraceum_DSM_14365 2
Anaeromyxobacter_sp._Fw109-5 1
Anaeromyxobacter_dehalogenans_2CP-1 2
Stigmatella_aurantiaca_DW4/3-1 2
Corallococcus_coralloides_DSM_2259 1
Myxococcus_xanthus_DK_1622 1
Myxococcus_fulvus_HW-1 2
Dechloromonas_aromatica_RCB 0
Thauera_sp._MZ1T 1
Chromobacterium_violaceum_ATCC_12472 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 0
Rubrivivax_gelatinosus_IL144 0
Burkholderia_rhizoxinica_HKI_454 3
Burkholderia_phytofirmans_PsJN 2
Burkholderia_phymatum_STM815 1
Burkholderia_xenovorans_LB400 2
Cupriavidus_taiwanensis_LMG_19424 1
Cupriavidus_metallidurans_CH34 1
Cupriavidus_necator_N-1 1
Ralstonia_pickettii_12D 0
Ralstonia_solanacearum_CFBP2957 0
Burkholderia_sp._RPE64 4
Burkholderia_sp._CCGE1002 2
Burkholderia_thailandensis_E264 1
Burkholderia_pseudomallei_1106a 1
Burkholderia_mallei_SAVP1 1
Burkholderia_ambifaria_AMMD 2
Burkholderia_cenocepacia_HI2424 2
Burkholderia_multivorans_ATCC_17616 2
Burkholderia_vietnamiensis_G4 2
Burkholderia_gladioli_BSR3 3
Burkholderia_glumae_BGR1 1
Ramlibacter_tataouinensis_TTB310 1
Delftia_acidovorans_SPH-1 0
Rhodoferax_ferrireducens_T118 0
Acidovorax_sp._KKS102 0
Collimonas_fungivorans_Ter331 1
Parvularcula_bermudensis_HTCC2503 1
Brevundimonas_subvibrioides_ATCC_15264 1
Caulobacter_sp._K31 1
Sphingobium_chlorophenolicum_L-1 1
Sphingomonas_sp._MM-1 1
Sphingomonas_wittichii_RW1 1
Hirschia_baltica_ATCC_49814 1
Hyphomonas_neptunium_ATCC_15444 1
Roseobacter_denitrificans_OCh_114 0
Rhodospirillum_centenum_SW 1
Rhodospirillum_rubrum_F11 1
Azospirillum_lipoferum_4B 2
Azospirillum_sp._B510 1
Azospirillum_brasilense_Sp245 1
Granulibacter_bethesdensis_CGDNIH1 1
Acidiphilium_cryptum_JF-5 2
Polymorphum_gilvum_SL003B-26A1 1
Starkeya_novella_DSM_506 0
Xanthobacter_autotrophicus_Py2 0
Azorhizobium_caulinodans_ORS_571 1
Methylobacterium_extorquens_AM1 1
Methylobacterium_sp._4-46 3
Methylobacterium_radiotolerans_JCM_2831 1
Parvibaculum_lavamentivorans_DS-1 0
Ochrobactrum_anthropi_ATCC_49188 2
Brucella_ovis_ATCC_25840 1
Brucella_abortus_S19 1
Sinorhizobium_fredii_NGR234 2
Sinorhizobium_medicae_WSM419 1
Sinorhizobium_meliloti_AK83 1
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 2
Rhizobium_etli_CIAT_652 1
Rhizobium_leguminosarum_bv._viciae_3841 2
Agrobacterium_tumefaciens_str._C58 1
Agrobacterium_radiobacter_K84 1
Agrobacterium_sp._H13-3 2
Agrobacterium_vitis_S4 2
Mesorhizobium_sp._BNC1 0
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 1
Mesorhizobium_loti_MAFF303099 1
Methylocella_silvestris_BL2 2
Beijerinckia_indica_subsp._indica_ATCC_9039 1
Hyphomicrobium_denitrificans_ATCC_51888 1
Rhodopseudomonas_palustris_BisA53 1
Nitrobacter_hamburgensis_X14 1
Bradyrhizobium_japonicum_USDA_110 1
Bradyrhizobium_sp._ORS_278 1
Methylocystis_sp._SC2 0
Saccharophagus_degradans_2-40 2
Teredinibacter_turnerae_T7901 1
Cellvibrio_japonicus_Ueda107 0
Aggregatibacter_actinomycetemcomitans_D7S-1 1
Aeromonas_veronii_B565 1
Photobacterium_profundum_SS9 1
Psychromonas_ingrahamii_37 1
Shewanella_denitrificans_OS217 1
Shewanella_sp._MR-4 1
Shewanella_amazonensis_SB2B 2
Shewanella_frigidimarina_NCIMB_400 1
Shewanella_putrefaciens_CN-32 0
Colwellia_psychrerythraea_34H 1
Pseudoalteromonas_atlantica_T6c 1
Glaciecola_sp._4H-3-7+YE-5 1
Marinobacter_hydrocarbonoclasticus_ATCC_49840 0
Marinobacter_aquaeolei_VT8 0
Marinomonas_sp._MWYL1 0
Methylomonas_methanica_MC09 1
Stenotrophomonas_maltophilia_K279a 2
Xylella_fastidiosa_M23 1
Xanthomonas_axonopodis_pv._citri_str._306 2
Xanthomonas_albilineans_GPE_PC73 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 2
Xanthomonas_campestris_pv._campestris_str._B100 2
Alkalilimnicola_ehrlichii_MLHE-1 1
Allochromatium_vinosum_DSM_180 1
Thiocystis_violascens_DSM_198 1
Xenorhabdus_bovienii_SS-2004 0
Xenorhabdus_nematophila_ATCC_19061 0
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 0
Pectobacterium_atrosepticum_SCRI1043 0
Pseudomonas_entomophila_L48 0
Pseudomonas_syringae_pv._tomato_str._DC3000 0
Pseudomonas_protegens_Pf-5 1
Pseudomonas_fluorescens_SBW25 0
Pseudomonas_mendocina_ymp 0
Pseudomonas_aeruginosa_UCBPP-PA14 0
Methanocorpusculum_labreanum_Z 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   0
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   4
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0
Paracoccidioides_brasiliensis_Pb01_ 1
Paracoccidioides_brasiliensis_Pb03_ 1
Coccidioides_immitis_RMSCC_3703_ 0
Coccidioides_immitis_RMSCC_2394_ 0
Coccidioides_immitis_H538.4_ 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   3
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   3
Neospora_caninum_Nc-Liverpool_6.2 0
Chroococcidiopsis_thermalis_PCC_7203 1
Cyanothece_sp._PCC_7822 1
Cylindrospermum_stagnale_PCC_7417 0
Nocardiopsis_alba_ATCC_BAA-2165 1
Streptomyces_albus_J1074 1
Streptomyces_rapamycinicus_NRRL_5491 3
Streptomyces_davawensis_JCM_4913 1
Streptomyces_fulvissimus_DSM_40593 3
Streptomyces_venezuelae_ATCC_10712 1
Streptomyces_collinus_Tu_365 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1
Amycolatopsis_mediterranei_RB 4
Amycolatopsis_mediterranei_S699 4
Amycolatopsis_mediterranei_S699 4
Amycolatopsis_orientalis_HCCB10007 2
Actinoplanes_friuliensis_DSM_7358 0
Rhodococcus_pyridinivorans_SB3094 2
Rhodococcus_erythropolis_CCM2595 1
Nocardia_brasiliensis_ATCC_700358 2
Mycobacterium_gilvum_Spyr1 0
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 0
Tropheryma_whipplei_str._Twist 1
Bifidobacterium_longum_NCC2705 1
Bifidobacterium_longum_DJO10A 1
Bifidobacterium_longum_subsp._infantis_157F 1
Bifidobacterium_longum_subsp._longum_KACC_91563 1
Bifidobacterium_longum_subsp._longum_BBMN68 1
Bifidobacterium_longum_subsp._longum_F8 1
Bifidobacterium_longum_subsp._longum_JCM_1217 1
Bifidobacterium_breve_UCC2003 1
Bifidobacterium_bifidum_BGN4 1
Actinomyces_graevenitzii_C83_ 1
Actinomyces_odontolyticus_ATCC_17982 0
Deinococcus_peraridilitoris_DSM_19664 1
Roseburia_intestinalis_XB6B4 0
Clostridium_acetobutylicum_DSM_1731 1
Clostridium_acetobutylicum_EA_2018 1
Streptococcus_intermedius_B196 1
Streptococcus_dysgalactiae_subsp._equisimilis_167 1
Streptococcus_dysgalactiae_subsp._equisimilis_AC-2713 1
Streptococcus_dysgalactiae_subsp._equisimilis_ATCC_12394 1
Streptococcus_dysgalactiae_subsp._equisimilis_RE378 1
Paenibacillus_sp._Y412MC10 1
Paenibacillus_mucilaginosus_KNP414 1
Paenibacillus_mucilaginosus_K02 2
Bacillus_infantis_NRRL_B-14911 0
Bacillus_thuringiensis_HD-789 1
Bacillus_megaterium_WSH-002 0
Bacillus_megaterium_QM_B1551 0
Singulisphaera_acidiphila_DSM_18658 3
Borrelia_afzelii_HLJ01 1
Thermotoga_maritima_MSB8 0
Bdellovibrio_exovorus_JSS 1
Sorangium_cellulosum_So0157-2 2
Anaeromyxobacter_sp._K 2
Anaeromyxobacter_dehalogenans_2CP-C 1
Myxococcus_stipitatus_DSM_14675 2
Burkholderia_phenoliruptrix_BR3459a 2
Pandoraea_pnomenusa_3kgm 1
Ralstonia_pickettii_12J 0
Ralstonia_solanacearum_FQY_4 0
Ralstonia_solanacearum_Po82 0
Ralstonia_solanacearum_PSI07 0
Ralstonia_solanacearum_CMR15 0
Ralstonia_solanacearum_GMI1000 0
Burkholderia_sp._YI23 3
Burkholderia_sp._CCGE1003 3
Burkholderia_sp._CCGE1001 2
Burkholderia_sp._KJ006 2
Burkholderia_thailandensis_MSMB121 1
Burkholderia_pseudomallei_MSHR305 1
Burkholderia_pseudomallei_NCTC_13179 1
Burkholderia_pseudomallei_BPC006 1
Burkholderia_pseudomallei_1026b 1
Burkholderia_pseudomallei_MSHR346 1
Burkholderia_pseudomallei_668 1
Burkholderia_pseudomallei_1710b 0
Burkholderia_pseudomallei_K96243 1
Burkholderia_mallei_NCTC_10229 1
Burkholderia_mallei_NCTC_10247 1
Burkholderia_mallei_ATCC_23344 0
Burkholderia_lata 2
Burkholderia_ambifaria_MC40-6 2
Burkholderia_cenocepacia_MC0-3 2
Burkholderia_cenocepacia_AU_1054 1
Burkholderia_cenocepacia_J2315 2
Burkholderia_multivorans_ATCC_17616 2
Burkholderia_cepacia_GG4 2
Octadecabacter_arcticus_238 1
Rhodobacter_sphaeroides_ATCC_17025 1
Rhodospirillum_rubrum_ATCC_11170 1
Methylobacterium_extorquens_DM4 1
Brucella_ceti_TE10759-12 1
Brucella_ceti_TE28753-12 1
Brucella_canis_HSK_A52141 1
Brucella_melitensis_NI 1
Brucella_melitensis_M5-90 1
Brucella_melitensis_M28 1
Brucella_melitensis_bv._1_str._16M 1
Brucella_abortus_A13334 1
Brucella_abortus_bv._1_str._9-941 1
Sinorhizobium_fredii_USDA_257 4
Sinorhizobium_fredii_HH103 2
Sinorhizobium_meliloti_GR4 2
Sinorhizobium_meliloti_Rm41 2
Sinorhizobium_meliloti_SM11 2
Sinorhizobium_meliloti_BL225C 2
Sinorhizobium_meliloti_1021 1
Rhizobium_etli_CFN_42 2
Rhizobium_etli_bv._mimosae_str._Mim1 5
Rhizobium_tropici_CIAT_899 2
Rhizobium_leguminosarum_bv._trifolii_WSM2304 3
Rhizobium_leguminosarum_bv._trifolii_WSM1325 1
Rhodopseudomonas_palustris_DX-1 1
Rhodopseudomonas_palustris_TIE-1 1
Rhodopseudomonas_palustris_HaA2 1
Rhodopseudomonas_palustris_BisB5 1
Rhodopseudomonas_palustris_BisB18 1
Rhodopseudomonas_palustris_CGA009 1
Bradyrhizobium_sp._S23321 1
Bradyrhizobium_sp._BTAi1 1
Bradyrhizobium_oligotrophicum_S58 1
Bradyrhizobium_japonicum_USDA_6 2
Simiduia_agarivorans_SA1_=_DSM_21679 0
Vibrio_nigripulchritudo_VibrioScope 0
Shewanella_sp._ANA-3 1
Shewanella_sp._MR-7 1
Glaciecola_psychrophila_170 1
Alcanivorax_dieselolei_B5 0
Stenotrophomonas_maltophilia_D457 2
Stenotrophomonas_maltophilia_JV3 2
Stenotrophomonas_maltophilia_R551-3 2
Xylella_fastidiosa_subsp._fastidiosa_GB514 1
Xylella_fastidiosa_M12 1
Xylella_fastidiosa_Temecula1 1
Xanthomonas_citri_subsp._citri_Aw12879 2
Xanthomonas_campestris_pv._vesicatoria_str._85-10 2
Xanthomonas_axonopodis_pv._citrumelo_F1 2
Xanthomonas_axonopodis_Xac29-1 3
Xanthomonas_oryzae_pv._oryzicola_BLS256 2
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 2
Xanthomonas_oryzae_pv._oryzae_KACC_10331 2
Xanthomonas_campestris_pv._raphani_756C 1
Xanthomonas_campestris_pv._campestris_str._8004 2
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 2
Dickeya_dadantii_Ech586 0
Dickeya_dadantii_3937 0
Pseudomonas_syringae_pv._syringae_B728a 0
Pseudomonas_protegens_CHA0 0
Pseudomonas_poae_RE*1-1-14 0
Pseudomonas_fluorescens_R124 0
Pseudomonas_fluorescens_Pf0-1 0
Pseudomonas_aeruginosa_SCV20265 0
Pseudomonas_aeruginosa_MTB-1 0
Pseudomonas_aeruginosa_RP73 0
Pseudomonas_aeruginosa_DK2 0
Pseudomonas_aeruginosa_M18 0

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Longest transcript per gene
Genome     Number
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   0
Microcebus_murinus_69_1   (Gray mouse lemur)   1
Rattus_norvegicus_69_3.4   (Norway rat)   1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   4
Oryctolagus_cuniculus_69_2   (Rabbit)   1
Ochotona_princeps_69   (American pika)   10
Tupaia_belangeri_69   (Northern tree shrew)   2
Bos_taurus_69_3.1   (Cattle)   1
Vicugna_pacos_69_1   (Alpaca)   6
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Felis_catus_69   (Domestic cat)   4
Pteropus_vampyrus_69_1   (Large flying fox)   3
Sorex_araneus_69_1   (European shrew)   4
Erinaceus_europaeus_69   (Western European hedgehog)   3
Procavia_capensis_69_1   (Cape rock hyrax)   0
Loxodonta_africana_69_3   (African savanna elephant)   1
Echinops_telfairi_69   (Small Madagascar hedgehog)   4
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   4
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   2
Macropus_eugenii_69_1.0   (Tammar wallaby)   5
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1
Gallus_gallus_69_2   (Chicken)   0
Latimeria_chalumnae_69_1   (Coelacanth)   1
Gadus_morhua_69_1   (Atlantic cod)   1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1
Takifugu_rubripes_69_4   (Torafugu)   0
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   0
Oryzias_latipes_69_1   (Japanese medaka)   0
Danio_rerio_69_9   (Zebrafish)   0
Drosophila_melanogaster_69_5   (Fruit fly)   1
Caenorhabditis_elegans_69_215   (Roundworm)   0

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   2
Homo_sapiens__(NCBI_version)   (Human)   0
Heliconius_numata__(Incomplete) 1
Loa_loa_v3.3_(Request)   (Eye worm)   0
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1
Lotus_japonicus__(Early_assembly) 2
Malus_x_domestica_(Duplicate)   (Apple)   5
Ricinus_communis__(Early_assembly)   (Castor bean)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 13
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   2
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   2
Phoenix_dactylifera__(Early_draft)   (Date palm)   2
NCBI_plasmid_sequences_(Plasmids) 31
Protein_Data_Bank_(all_PDB_sequenc) 10
STRING_v9.0.5_(STRING) 283
Uniprot_2018_03_genome 12904
NCBI_2017_08_genome 10920
NCBI_viral_sequences_(Viral) 1
TargetDB__(Targets) 19
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1
Protozoadb_2010_08_(Protozoadb) 3

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