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Home > SCOP hierarchy > Domain combination - 55718,_gap_

Domain combinations for 55718,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome Number

Canis_familiaris_76_3.1 (Dog) 1

Ficedula_albicollis_76_1.0 (Collared flycatcher) 0

Crassostrea_gigas_22 (Pacific oyster) 0

Strigamia_maritima_22 0

Sarcoptes_scabiei 0

Trichoplax_adhaerens_ 0

Proterospongia_sp._ATCC_50818_ 0

Sphaeroforma_arctica_JP610_ 1

Capsaspora_owczarzaki_ATCC_30864_ 0

Mucor_circinelloides_ 1

Malassezia_globosa_CBS_7966_ 2

Sporisorium_reilianum_22 0

Ustilago_maydis_ 0

Mixia_osmundae_IAM_14324_v1.0 0

Rhodotorula_graminis_WP1_v1.0 1

Uncinocarpus_reesii_1704_ 0

Malus_domestica_v196 (Apple) 0

Linum_usitatissimum_v200 (Flax) 1

Actinidia_chinensis_Hongyang_ 0

Albugo_laibachii_22 6

Pythium_iwayamai_DAOM_BR242034_22 1

Pythium_arrhenomanes_ATCC_12531_22 0

Pythium_irregulare_DAOM_BR486_22 0

Pythium_vexans_DAOM_BR484_22 1

Phytophthora_ramorum_1.1 (Sudden oak death agent) 0

Phytophthora_sojae_1.1 1

Phytophthora_capsici_ 1

Neospora_caninum 0

Toxoplasma_gondii_VEG 0

Toxoplasma_gondii_ME49 0

Toxoplasma_gondii_GT1 0

Symbiodinium_minutum_clade_B1_v1.2 1

Emiliania_huxleyi_CCMP1516_ 1

Atopobium_parvulum_DSM_20469 0

Pseudonocardia_dioxanivorans_CB1190 0

Clostridium_thermocellum_ATCC_27405 0

Acetobacterium_woodii_DSM_1030 0

[Ruminococcus]_torques 0

Eubacterium_rectale_M104/1 0

Eubacterium_rectale_ATCC_33656 0

Candidatus_Arthromitus_sp._SFB-mouse-Japan 0

Tepidanaerobacter_acetatoxydans_Re1 0

Candidatus_Chloracidobacterium_thermophilum_B 1

Acidithiobacillus_ferrivorans_SS3 1

Acidithiobacillus_ferrooxidans_ATCC_53993 1

Burkholderia_glumae_BGR1 1

Sideroxydans_lithotrophicus_ES-1 1

Methylotenera_versatilis_301 1

Methylobacillus_flagellatus_KT 1

Magnetococcus_marinus_MC-1 1

Caulobacter_sp._K31 1

Phenylobacterium_zucineum_HLK1 1

Zymomonas_mobilis_subsp._mobilis_NCIMB_11163 0

Dinoroseobacter_shibae_DFL_12 0

Pseudovibrio_sp._FO-BEG1 1

Rhodobacter_sphaeroides_ATCC_17029 1

Rhodobacter_capsulatus_SB_1003 1

Paracoccus_denitrificans_PD1222 1

Rhodospirillum_photometricum_DSM_122 1

Magnetospirillum_magneticum_AMB-1 1

Rhodospirillum_centenum_SW 1

Rhodospirillum_rubrum_F11 1

Azospirillum_lipoferum_4B 0

Azospirillum_sp._B510 0

Azospirillum_brasilense_Sp245 0

Acidiphilium_multivorum_AIU301 1

Acidiphilium_cryptum_JF-5 1

Polymorphum_gilvum_SL003B-26A1 1

Ochrobactrum_anthropi_ATCC_49188 1

Brucella_microti_CCM_4915 1

Brucella_pinnipedialis_B2/94 1

Brucella_canis_ATCC_23365 1

Brucella_suis_ATCC_23445 1

Brucella_melitensis_ATCC_23457 1

Brucella_ovis_ATCC_25840 1

Brucella_abortus_S19 1

Sinorhizobium_fredii_NGR234 1

Sinorhizobium_medicae_WSM419 1

Genome_sequence_of_Rhizobium_sp._strain_IRBG74 1

Agrobacterium_tumefaciens_str._C58 1

Mesorhizobium_sp._BNC1 1

Rhodomicrobium_vannielii_ATCC_17100 1

Hyphomicrobium_denitrificans_ATCC_51888 1

Rhodopseudomonas_palustris_BisA53 1

Gallibacterium_anatis_UMN179 1

Haemophilus_parasuis_SH0165 1

Haemophilus_ducreyi_35000HP 1

Actinobacillus_pleuropneumoniae_serovar_5b_str._L20 1

Oceanimonas_sp._GK1 1

Aeromonas_veronii_B565 2

Aeromonas_salmonicida_subsp._salmonicida_A449 2

Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 2

Aliivibrio_salmonicida_LFI1238 1

Vibrio_fischeri_MJ11 1

Vibrio_sp._Ex25 1

Vibrio_harveyi_ATCC_BAA-1116 1

Vibrio_parahaemolyticus_RIMD_2210633 1

Vibrio_splendidus_LGP32 1

Vibrio_anguillarum_775 2

Vibrio_furnissii_NCTC_11218 1

Vibrio_vulnificus_MO6-24/O 1

Vibrio_cholerae_O395 1

Photobacterium_profundum_SS9 1

Psychromonas_ingrahamii_37 2

Psychromonas_sp._CNPT3 1

Idiomarina_loihiensis_L2TR 1

Ferrimonas_balearica_DSM_9799 1

Shewanella_piezotolerans_WP3 1

Shewanella_loihica_PV-4 1

Shewanella_halifaxensis_HAW-EB4 1

Shewanella_sediminis_HAW-EB3 1

Shewanella_denitrificans_OS217 1

Shewanella_pealeana_ATCC_700345 1

Shewanella_oneidensis_MR-1 1

Shewanella_baltica_OS185 2

Shewanella_woodyi_ATCC_51908 1

Shewanella_sp._MR-4 2

Shewanella_amazonensis_SB2B 1

Shewanella_violacea_DSS12 1

Shewanella_frigidimarina_NCIMB_400 1

Shewanella_putrefaciens_CN-32 2

Pseudoalteromonas_sp._SM9913 1

Pseudoalteromonas_atlantica_T6c 1

Pseudoalteromonas_haloplanktis_TAC125 1

Glaciecola_sp._4H-3-7+YE-5 1

Marinobacter_adhaerens_HP15 1

Marinobacter_sp._BSs20148 1

Marinobacter_hydrocarbonoclasticus_ATCC_49840 1

Marinobacter_aquaeolei_VT8 1

Kangiella_koreensis_DSM_16069 1

Hahella_chejuensis_KCTC_2396 2

Marinomonas_posidonica_IVIA-Po-181 1

Marinomonas_sp._MWYL1 1

Marinomonas_mediterranea_MMB-1 1

Chromohalobacter_salexigens_DSM_3043 1

Halomonas_elongata_DSM_2581 2

Methylomicrobium_alcaliphilum 1

Methylomonas_methanica_MC09 1

Dichelobacter_nodosus_VCS1703A 1

Rhodanobacter_denitrificans 1

Frateuria_aurantia_DSM_6220 1

Halothiobacillus_neapolitanus_c2 1

Allochromatium_vinosum_DSM_180 1

Thiocystis_violascens_DSM_198 1

Nitrosococcus_watsonii_C-113 1

Nitrosococcus_halophilus_Nc4 1

Nitrosococcus_oceani_ATCC_19707 1

Coxiella_burnetii_Dugway_5J108-111 1

Legionella_longbeachae_NSW150 1

Legionella_pneumophila_str._Corby 1

Photorhabdus_asymbiotica 1

Photorhabdus_luminescens_subsp._laumondii_TTO1 1

Xenorhabdus_bovienii_SS-2004 1

Xenorhabdus_nematophila_ATCC_19061 1

Providencia_stuartii_MRSN_2154 1

Proteus_mirabilis_HI4320 1

Edwardsiella_ictaluri_93-146 1

Edwardsiella_tarda_EIB202 1

Rahnella_sp._Y9602 1

Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 1

Yersinia_pseudotuberculosis_IP_31758 1

Yersinia_pestis_Pestoides_F 1

Yersinia_enterocolitica_subsp._enterocolitica_8081 1

Serratia_sp._AS12 1

Serratia_sp._ATCC_39006 1

Serratia_plymuthica_AS9 1

Serratia_proteamaculans_568 1

Dickeya_dadantii_Ech703 1

Dickeya_zeae_Ech1591 1

Pectobacterium_wasabiae_WPP163 1

Pectobacterium_sp._SCC3193 1

Pectobacterium_atrosepticum_SCRI1043 1

Pectobacterium_carotovorum_subsp._carotovorum_PC1 1

Sodalis_glossinidius_str._'morsitans' 1

Pantoea_sp._At-9b 1

Pantoea_vagans_C9-1 1

Pantoea_ananatis_LMG_20103 1

Erwinia_tasmaniensis_Et1/99 1

Erwinia_sp._Ejp617 1

Erwinia_billingiae_Eb661 1

Erwinia_pyrifoliae_Ep1/96 1

Erwinia_amylovora_ATCC_49946 1

Escherichia_blattae_DSM_4481 1

Cronobacter_turicensis_z3032 1

Cronobacter_sakazakii_ES15 1

secondary_endosymbiont_of_Ctenarytaina_eucalypti 1

Candidatus_Hamiltonella_defensa_5AT_(Acyrthosiphon_pisum) 1

Enterobacteriaceae_bacterium_strain_FGI_57 1

Shigella_sonnei_Ss046 1

Shigella_flexneri_5_str._8401 1

Shigella_dysenteriae_Sd197 1

Shigella_boydii_CDC_3083-94 1

Salmonella_bongori_NCTC_12419 1

Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 1

Klebsiella_oxytoca_E718 1

Klebsiella_variicola_At-22 1

Klebsiella_pneumoniae_NTUH-K2044 1

Enterobacter_aerogenes_KCTC_2190 1

Escherichia_fergusonii_ATCC_35469 1

Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 1

Enterobacter_sp._R4-368 1

Enterobacter_sp._638 1

Enterobacter_asburiae_LF7a 1

Enterobacter_cloacae_subsp._dissolvens_SDM 1

Citrobacter_rodentium_ICC168 1

Citrobacter_koseri_ATCC_BAA-895 1

Azotobacter_vinelandii_DJ 1

Pseudomonas_sp._TKP 1

Pseudomonas_sp._UW4 1

Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1

Pseudomonas_entomophila_L48 1

Pseudomonas_syringae_pv._tomato_str._DC3000 1

Pseudomonas_stutzeri_A1501 1

Pseudomonas_fulva_12-X 1

Pseudomonas_putida_F1 1

Pseudomonas_protegens_Pf-5 1

Pseudomonas_fluorescens_SBW25 1

Pseudomonas_mendocina_ymp 1

Pseudomonas_aeruginosa_UCBPP-PA14 1

Pseudomonas_sp._VLB120 1

Psychrobacter_sp._G 1

Psychrobacter_arcticus_273-4 1

Psychrobacter_cryohalolentis_K5 1

Acinetobacter_oleivorans_DR1 1

Acinetobacter_calcoaceticus_PHEA-2 1

Acinetobacter_baumannii_ATCC_17978 1

Methylophaga_sp._JAM1 1

Cycloclasticus_sp._P1 1

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Longest transcript per gene
Genome Number

Canis_familiaris_69_3.1 (Dog) 1

Others
Genome Number

Malus_x_domestica_(Duplicate) (Apple) 0

Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1

NCBI_plasmid_sequences_(Plasmids) 10

Protozoadb_2010_08_(Protozoadb) 0

TargetDB__(Targets) 36

STRING_v9.0.5_(STRING) 228

Uniprot_2018_03_genome 11340

NCBI_2017_08_genome 32988

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Domain combinations for 55718,_gap_ superfamilies in groups of genomes