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  Home > SCOP hierarchy > Domain combination - 56371

Domain combinations for 56371 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

56371 - Ribosome inactivating proteins (RIP)

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   0
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   0
Sus_scrofa_76_10.2   (Pig)   0
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   0
Saccoglossus_kowalevskii_v3.0 0
Meleagris_gallopavo_76_2   (Turkey)   0
Gallus_gallus_76_4   (Chicken)   0
Anas_platyrhynchos_76_1.0   (Mallard)   0
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   0
Ficedula_albicollis_76_1.0   (Collared flycatcher)   0
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   0
Xenopus_laevis_   (African clawed frog)   0
Oryzias_latipes_76_1   (Japanese medaka)   0
Oikopleura_dioica 0
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   0
Crassostrea_gigas_22   (Pacific oyster)   0
Lottia_gigantea_   (Owl limpet)   0
Capitella_sp._I_ 0
Danaus_plexippus_OGS1.0   (Monarch butterfly)   0
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Camponotus_floridanus_v3.3   (Florida carpenter ant)   0
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   0
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   0
Anopheles_gambiae_49_3j   (African malaria mosquito)   0
Acyrthosiphon_pisum_   (Pea aphid)   0
Strigamia_maritima_22 0
Tetranychus_urticae_   (Two-spotted spider mite)   0
Meloidogyne_hapla_ 0
Caenorhabditis_brenneri_ 0
Caenorhabditis_remanei_ 0
Caenorhabditis_elegans_76_235   (Roundworm)   0
Caenorhabditis_briggsae_2 0
Nematostella_vectensis_1.0   (Starlet sea anemone)   0
Hydra_vulgaris 0
Proterospongia_sp._ATCC_50818_ 0
Sphaeroforma_arctica_JP610_ 0
Rhizopus_oryzae_RA_99-880_ 0
Mucor_circinelloides_ 0
Rhizomucor_miehei_CAU432_ 0
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 0
Sphaerobolus_stellatus_v1.0 2
Pisolithus_microcarpus_441_v1.0 0
Pisolithus_tinctorius_Marx_270_v1.0 0
Fomitopsis_pinicolav1.0 0
Fomitopsis_pinicola_FP-58527_SS1_v3.0 0
Daldinia_eschscholzii_EC12_v1.0 0
Magnaporthe_poae_ATCC_64411_22 0
Glomerella_graminicola_22 0
Nectria_haematococca_mpVI_ 0
Fusarium_oxysporum_f._sp._lycopersici_4286_ 0
Botrytis_cinerea_B05.10_ 0
Sclerotinia_sclerotiorum_ 0
Blumeria_graminis_22 0
Ajellomyces_dermatitidis_SLH14081_ 0
Aspergillus_nidulans_FGSC_A4_ 0
Aspergillus_sydowii_v1.0 0
Aspergillus_glaucus 0
Aspergillus_oryzae_RIB40_ 0
Aspergillus_flavus_NRRL3357_ 0
Aspergillus_clavatus_NRRL_1_ 0
Tuber_melanosporum_Mel28_22 0
Tuber_melanosporum_Vittad_   (Perigord truffle)   0
Candida_parapsilosis_ 0
Candida_albicans_SC5314 0
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 0
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 0
Lachancea_kluyveri_ 0
Saccharomyces_paradoxus_MIT 0
Saccharomyces_cerevisiae_76   (Baker's yeast)   0
Allomyces_macrogynus_ATCC_38327_ 0
Dictyostelium_discoideum 0
Entamoeba_histolytica_1 0
Selaginella_moellendorffii_ 0
Eucalyptus_grandis_v201   (Rose gum)   0
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Gossypium_raimondii_v221 1
Citrus_clementina_v165 0
Citrus_sinensis_v154   (Sweet orange)   0
Thellungiella_halophila_v173 0
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   0
Capsella_rubella_v183 0
Arabidopsis_lyrata_   (Lyrate rockcress)   0
Arabidopsis_thaliana_10   (Thale cress)   0
Medicago_truncatula_   (Barrel medic)   0
Glycine_max_v109   (Soybean)   0
Cucumis_sativus_v122   (Cucumber)   0
Malus_domestica_v196   (Apple)   5
Prunus_persica_v139   (Peach)   1
Linum_usitatissimum_v200   (Flax)   0
Manihot_esculenta_v147   (Cassava)   4
Populus_trichocarpa_v156   (Black cottonwood)   1
Vitis_vinifera_   (Wine grape)   0
Actinidia_chinensis_Hongyang_ 0
Triticum_urartu_22 11
Triticum_aestivum_22   (Bread wheat)   11
Aegilops_tauschii_22 14
Brachypodium_distachyon_   (Stiff brome)   4
Oryza_barthii_22   (African wild rice)   16
Oryza_meridionalis_22 14
Oryza_glumaepatula_22 17
Oryza_glaberrima   (African rice)   13
Oryza_punctata_22 18
Oryza_nivara_22 18
Oryza_brachyantha_22   (Malo sina)   9
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   18
Oryza_sativa_v193   (Rice)   18
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   2
Panicum_virgatum_v202   (Switchgrass)   36
Setaria_italica_v164   (Foxtail millet)   12
Zea_mays_subsp._mays_   (Maize)   4
Zea_mays_v181   (Maize)   7
Sorghum_bicolor_   (Sorghum)   5
Amborella_trichopoda_22 0
Bigelowiella_natans_CCMP2755_22 0
Giardia_lamblia_2.3 0
Cyanophora_paradoxa_ 0
Trypanosoma_vivax_ 0
Albugo_laibachii_22 0
Pythium_iwayamai_DAOM_BR242034_22 0
Pythium_aphanidermatum_DAOM_BR444_22 0
Phytophthora_infestans_T30-4_ 0
Phytophthora_capsici_ 0
Hyaloperonospora_arabidopsidis_22 0
Fragilariopsis_cylindrus 0
Thalassiosira_pseudonana_CCMP1335 0
Tetrahymena_thermophila_SB210_1_ 0
Plasmodium_chabaudi_ 0
Plasmodium_berghei_ANKA_ 0
Symbiodinium_minutum_clade_B1_v1.2 0
Naegleria_gruberi_ 0
Trichomonas_vaginalis_ 0
Guillardia_theta_CCMP2712_v1.0_ 0
Synechococcus_sp._PCC_6312 0
Synechococcus_elongatus_PCC_7942 0
Mycoplasma_capricolum_subsp._capricolum_ATCC_27343 0
Streptosporangium_roseum_DSM_43021 0
Streptomyces_coelicolor_A3(2) 0
Streptomyces_scabiei_87.22 1
Kribbella_flavida_DSM_17836 0
Micromonospora_sp._L5 0
Corynebacterium_diphtheriae_NCTC_13129 0
Thermaerobacter_marianensis_DSM_12885 0
Sulfobacillus_acidophilus_DSM_10332 0
Oscillibacter_valericigenes_Sjm18-20 0
Desulfotomaculum_carboxydivorans_CO-1-SRB 0
Caldicellulosiruptor_obsidiansis_OB47 0
Caldicellulosiruptor_lactoaceticus_6A 0
Halanaerobium_praevalens_DSM_2228 0
Enterococcus_faecium_Aus0004 0
Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293 0
Lactobacillus_kefiranofaciens_ZW3 0
Exiguobacterium_sp._MH3 0
Paenibacillus_sp._JDR-2 0
Paenibacillus_mucilaginosus_3016 0
Listeria_innocua_Clip11262 0
Solibacillus_silvestris_StLB046 0
Bacillus_atrophaeus_1942 0
Melioribacter_roseus_P3M 0
Chlorobium_chlorochromatii_CaD3 0
Haliscomenobacter_hydrossis_DSM_1100 0
Niastella_koreensis_GR20-10 0
Fibrella_aestuarina 0
Runella_slithyformis_DSM_19594 0
Pedobacter_saltans_DSM_12145 0
Candidatus_Sulcia_muelleri_DMIN 0
Robiginitalea_biformata_HTCC2501 0
Flavobacterium_columnare_ATCC_49512 1
Flavobacterium_johnsoniae_UW101 0
Brachyspira_murdochii_DSM_12563 0
Borrelia_recurrentis_A1 0
Spirochaeta_africana_DSM_8902 0
Petrotoga_mobilis_SJ95 0
Dictyoglomus_thermophilum_H-6-12 0
Candidatus_Nitrospira_defluvii 0
Sebaldella_termitidis_ATCC_33386 0
Candidatus_Methylomirabilis_oxyfera 0
Sulfurospirillum_barnesii_SES-3 0
Sulfurimonas_denitrificans_DSM_1251 0
Helicobacter_cetorum_MIT_00-7128 0
Desulfobacca_acetoxidans_DSM_11109 0
Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 0
Geobacter_uraniireducens_Rf4 0
Geobacter_bemidjiensis_Bem 0
Geobacter_sulfurreducens_KN400 0
Burkholderia_sp._CCGE1002 1
Acidovorax_sp._JS42 0
Comamonas_testosteroni_CNB-2 0
Bordetella_avium_197N 0
Methylovorus_sp._MP688 0
Pseudovibrio_sp._FO-BEG1 0
Gluconacetobacter_diazotrophicus_PAl_5 0
Nitrobacter_winogradskyi_Nb-255 0
Bradyrhizobium_sp._ORS_278 0
Bartonella_clarridgeiae_73 0
Teredinibacter_turnerae_T7901 0
Aeromonas_salmonicida_subsp._salmonicida_A449 0
Aliivibrio_salmonicida_LFI1238 0
Photobacterium_profundum_SS9 0
Shewanella_piezotolerans_WP3 0
Xanthomonas_axonopodis_pv._citri_str._306 1
Edwardsiella_ictaluri_93-146 0
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 0
Pantoea_vagans_C9-1 0
Shigella_dysenteriae_Sd197 1
Citrobacter_rodentium_ICC168 0
Francisella_sp._TX077308 0
Ignisphaera_aggregans_DSM_17230 0
Vulcanisaeta_moutnovskia_768-28 0
Pyrococcus_horikoshii_OT3 0
Thermoplasma_volcanium_GSS1 0
Halogeometricum_borinquense_DSM_11551 0
Haloferax_volcanii_DS2 0
Aciduliprofundum_boonei_T469 0

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Strains
Genome     Number
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0
Candida_albicans_WO-1_ 0
Saccharomyces_cerevisiae_FostersB 0
Saccharomyces_cerevisiae_FostersO 0
Saccharomyces_cerevisiae_VL3 0
Saccharomyces_cerevisiae_AWRI796 0
Saccharomyces_cerevisiae_Sigma1278b 0
Saccharomyces_cerevisiae_W303 0
Saccharomyces_cerevisiae_AWRI1631 0
Saccharomyces_cerevisiae_CLIB215 0
Saccharomyces_cerevisiae_RM11-1a 0
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   0
Batrachochytrium_dendrobatidis_JEL423_ 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   0
Hordeum_vulgare_22   (Domesticated barley)   12
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   22
Chroococcidiopsis_thermalis_PCC_7203 0
Chamaesiphon_minutus_PCC_6605 0
Synechococcus_sp._PCC_7002 0
Synechococcus_elongatus_PCC_6301 0
Prochlorococcus_marinus_str._MIT_9211 0
Oscillatoria_nigro-viridis_PCC_7112 0
Arthrospira_platensis_NIES-39 0
Calothrix_parietina_Calothrix_sp._PCC_6303 0
Mycoplasma_mycoides_subsp._mycoides_SC_str._Gladysdale 0
Mycoplasma_mycoides_subsp._mycoides_SC_str._PG1 0
Mycoplasma_putrefaciens_Mput9231 0
Propionibacterium_acidipropionici_ATCC_4875 0
Corynebacterium_ulcerans_809 1
Corynebacterium_diphtheriae_BH8 0
Corynebacterium_diphtheriae_INCA_402 1
Corynebacterium_diphtheriae_VA01 1
Corynebacterium_diphtheriae_HC04 0
Corynebacterium_diphtheriae_HC03 1
Corynebacterium_diphtheriae_HC02 1
Corynebacterium_diphtheriae_HC01 0
Corynebacterium_diphtheriae_241 0
Corynebacterium_diphtheriae_CDCE_8392 0
Corynebacterium_diphtheriae_PW8 1
Corynebacterium_diphtheriae_C7_(beta) 1
Corynebacterium_diphtheriae_31A 1
Actinomyces_viscosus_C505 0
Thermus_oshimai_JL-2 0
Ruminococcus_champanellensis_18P13 0
Sulfobacillus_acidophilus_TPY 0
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 0
Clostridium_botulinum_BKT015925 0
Enterococcus_faecium_Aus0085 0
Enterococcus_faecium_NRRL_B-2354 0
Enterococcus_faecium_DO 0
Lactobacillus_plantarum_subsp._plantarum_ST-III 0
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_BAA-2069 0
Streptococcus_oligofermentans_AS_1.3089 0
Paenibacillus_sp._Y412MC10 0
Paenibacillus_mucilaginosus_KNP414 0
Paenibacillus_mucilaginosus_K02 0
Listeria_monocytogenes_J1-220 0
Listeria_monocytogenes_J1816 0
Listeria_monocytogenes_ATCC_19117 0
Listeria_monocytogenes_serotype_7_str._SLCC2482 0
Listeria_monocytogenes_08-5578 0
Bacillus_amyloliquefaciens_LL3 0
Staphylococcus_aureus_subsp._aureus_MSHR1132 0
Staphylococcus_aureus_RF122 0
Staphylococcus_aureus_subsp._aureus_CN1 0
Staphylococcus_aureus_subsp._aureus_HO_5096_0412 0
Candidatus_Sulcia_muelleri_GWSS 0
Geobacter_sp._M18 0
Geobacter_sulfurreducens_PCA 0
Burkholderia_ambifaria_MC40-6 1
Burkholderia_cenocepacia_J2315 1
Octadecabacter_arcticus_238 0
Gluconacetobacter_diazotrophicus_PAl_5 0
Rhizobium_etli_bv._mimosae_str._Mim1 0
Rhizobium_leguminosarum_bv._trifolii_WSM1325 0
Rhodopseudomonas_palustris_HaA2 0
Mannheimia_haemolytica_USMARC_2286 0
Mannheimia_haemolytica_M42548 0
Mannheimia_haemolytica_USDA-ARS-USMARC-183 0
Mannheimia_haemolytica_USDA-ARS-USMARC-185 0
Xanthomonas_citri_subsp._citri_Aw12879 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 0
Xanthomonas_axonopodis_Xac29-1 1
Serratia_plymuthica_4Rx13 0
Shigella_dysenteriae_1617 0
Escherichia_coli_O104:H4_str._2009EL-2050 0
Escherichia_coli_O104:H4_str._2009EL-2071 0
Escherichia_coli_O104:H4_str._2011C-3493 0
Escherichia_coli_Xuzhou21 1
Escherichia_coli_O103:H2_str._12009 1
Escherichia_coli_O26:H11_str._11368 0
Escherichia_coli_O111:H-_str._11128 1
Escherichia_coli_O157:H7_str._TW14359 0
Escherichia_coli_O157:H7_str._EC4115 0
Escherichia_coli_O157:H7_str._Sakai 1
Escherichia_coli_O157:H7_str._EDL933 1
Archaeoglobus_sulfaticallidus_PM70-1 0

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Longest transcript per gene
Genome     Number
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   0
Sus_scrofa_69_10.2   (Pig)   0
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   0
Meleagris_gallopavo_69_2   (Turkey)   0
Gallus_gallus_69_2   (Chicken)   0
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   0
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   0
Oryzias_latipes_69_1   (Japanese medaka)   0
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   0
Caenorhabditis_elegans_69_215   (Roundworm)   0
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   0
Arabidopsis_thaliana_10   (Thale cress)   0

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   0
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   0
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   0
Lotus_japonicus__(Early_assembly) 0
Malus_x_domestica_(Duplicate)   (Apple)   5
Ricinus_communis__(Early_assembly)   (Castor bean)   8
Nicotiana_benthamiana_0.4.4_(Early_draft) 0
Phoenix_dactylifera__(Early_draft)   (Date palm)   0
NCBI_plasmid_sequences_(Plasmids) 1
TargetDB__(Targets) 0
Protozoadb_2010_08_(Protozoadb) 0
NCBI_viral_sequences_(Viral) 4
PDB_chains_(SCOP_1.75)_(PDB) 45
UniProt__viral_sequences_(Viral) 18
STRING_v9.0.5_(STRING) 56
Protein_Data_Bank_(all_PDB_sequenc) 291
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1030
Uniprot_2018_03_genome 1147
NCBI_2017_08_genome 2016

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.