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  Home > SCOP hierarchy > Domain combination - 56574

Domain combinations for 56574 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

56574 - Serpins

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   158
Pan_troglodytes_76_2.1.4   (Chimpanzee)   27
Gorilla_gorilla_76_3.1   (Western gorilla)   32
Pongo_abelii_76_2   (Sumatran orangutan)   30
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   27
Papio_anubis_76   (Olive baboon)   32
Macaca_mulatta_76_1   (Rhesus monkey)   49
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   73
Otolemur_garnettii_76_3   (Small-eared galago)   31
Microcebus_murinus_76_1   (Gray mouse lemur)   27
Rattus_norvegicus_76_5.0   (Norway rat)   44
Mus_musculus_76_38   (House mouse)   114
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   19
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   41
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   27
Cavia_porcellus_76_3   (Domestic guinea pig)   44
Oryctolagus_cuniculus_76_2   (Rabbit)   32
Ochotona_princeps_76   (American pika)   23
Tupaia_belangeri_76   (Northern tree shrew)   19
Sus_scrofa_76_10.2   (Pig)   38
Bos_taurus_76_3.1   (Cattle)   42
Ovis_aries_76_3.1   (Sheep)   43
Vicugna_pacos_76_1   (Alpaca)   22
Tursiops_truncatus_76_1   (Bottlenose dolphin)   22
Mustela_putorius_furo_76_1.0   (Domestic ferret)   27
Ailuropoda_melanoleuca_76_1   (Giant panda)   29
Canis_familiaris_76_3.1   (Dog)   33
Felis_catus_76_6.2   (Domestic cat)   29
Equus_caballus_76_2   (Horse)   39
Myotis_lucifugus_76_2.0   (Little brown bat)   38
Pteropus_vampyrus_76_1   (Large flying fox)   22
Sorex_araneus_76_1   (European shrew)   22
Erinaceus_europaeus_76   (Western European hedgehog)   19
Procavia_capensis_76_1   (Cape rock hyrax)   21
Loxodonta_africana_76_3   (African savanna elephant)   30
Echinops_telfairi_76   (Small Madagascar hedgehog)   14
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   25
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   12
Macropus_eugenii_76_1.0   (Tammar wallaby)   15
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   33
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   25
Ornithorhynchus_anatinus_76_5   (Platypus)   33
Saccoglossus_kowalevskii_v3.0 5
Petromyzon_marinus_76_7.0   (Sea lamprey)   8
Meleagris_gallopavo_76_2   (Turkey)   24
Gallus_gallus_76_4   (Chicken)   22
Anas_platyrhynchos_76_1.0   (Mallard)   23
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   24
Ficedula_albicollis_76_1.0   (Collared flycatcher)   21
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   24
Anolis_carolinensis_76_2.0   (Green anole)   26
Xenopus_laevis_   (African clawed frog)   42
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   21
Latimeria_chalumnae_76_1   (Coelacanth)   18
Lepisosteus_oculatus_76   (Spotted gar)   16
Gadus_morhua_76_1   (Atlantic cod)   25
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   21
Takifugu_rubripes_76_4   (Torafugu)   65
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   35
Oryzias_latipes_76_1   (Japanese medaka)   24
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   17
Poecilia_formosa_76   (Amazon molly)   12
Oreochromis_niloticus_76_1.0   (Nile tilapia)   27
Astyanax_mexicanus_76   (Mexican tetra)   19
Danio_rerio_76_9   (Zebrafish)   39
Oikopleura_dioica 7
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   5
Ciona_intestinalis_76   (Vase tunicate)   10
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   11
Adineta_vaga 10
Octopus_bimaculoides_280 9
Crassostrea_gigas_22   (Pacific oyster)   7
Lottia_gigantea_   (Owl limpet)   8
Helobdella_robusta_ 16
Capitella_sp._I_ 2
Danaus_plexippus_OGS1.0   (Monarch butterfly)   16
Heliconius_melpomene_   (Postman butterfly)   15
Bombyx_mori_   (Domestic silkworm)   28
Nasonia_vitripennis_   (Jewel wasp)   1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   8
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3
Linepithema_humile_v1.1   (Argentine ant)   4
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   3
Solenopsis_invicta_v.2.2.3   (Red fire ant)   4
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   3
Atta_cephalotes_v1.1 3
Camponotus_floridanus_v3.3   (Florida carpenter ant)   6
Lucilia_cuprina   (Australian sheep blowfly)   12
Drosophila_grimshawi_1.3 12
Drosophila_willistoni_1.3 17
Drosophila_pseudoobscura_2.13 19
Drosophila_persimilis_1.3 17
Drosophila_suzukii 18
Drosophila_yakuba_1.3 26
Drosophila_simulans_1.3 22
Drosophila_sechellia_1.3 27
Drosophila_melanogaster_76_5   (Fruit fly)   36
Drosophila_erecta_1.3 18
Drosophila_ananassae_1.3 21
Drosophila_virilis_1.2 13
Drosophila_mojavensis_1.3 12
Megaselia_scalaris_22 8
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   24
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   38
Anopheles_darlingi_22   (American malaria mosquito)   3
Anopheles_gambiae_49_3j   (African malaria mosquito)   15
Tribolium_castaneum_3.0   (Red flour beetle)   24
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   9
Acyrthosiphon_pisum_   (Pea aphid)   12
Rhodnius_prolixus_22 6
Daphnia_pulex_   (Common water flea)   5
Strigamia_maritima_22 6
Sarcoptes_scabiei 6
Tetranychus_urticae_   (Two-spotted spider mite)   15
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   39
Pristionchus_pacificus_ 15
Meloidogyne_incognita_   (Southern root-knot nematode)   4
Meloidogyne_hapla_ 1
Onchocerca_volvulus_22 5
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   24
Caenorhabditis_japonica_ 8
Caenorhabditis_brenneri_ 23
Caenorhabditis_remanei_ 25
Caenorhabditis_elegans_76_235   (Roundworm)   16
Caenorhabditis_briggsae_2 8
Trichinella_spiralis_22 1
Hymenolepis_microstoma_ 10
Echinococcus_multilocularis_ 4
Echinococcus_granulosus_ 6
Taenia_solium_   (Pork tapeworm)   4
Schistosoma_mansoni_ 7
Mnemiopsis_leidyi   (Sea walnut)   6
Thelohanellus_kitauei 172
Acropora_digitifera_v1.0 2
Nematostella_vectensis_1.0   (Starlet sea anemone)   3
Hydra_vulgaris 1
Amphimedon_queenslandica 0
Trichoplax_adhaerens_ 3
Monosiga_brevicollis_ 0
Conidiobolus_coronatus_NRRL28638_v1.0 0
Phycomyces_blakesleeanus_ 0
Rhizopus_oryzae_RA_99-880_ 0
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 0
Melampsora_laricis-populina_ 0
Pisolithus_microcarpus_441_v1.0 0
Amanita_muscaria_Koide_v1.0   (Fly agaric)   0
Laccaria_bicolor_S238N-H82_ 0
Stereum_hirsutum_FP-91666_SS1__v1.0 0
Sebacina_vermifera_MAFF_305830_v1.0 0
Tulasnella_calospora_AL13/4D_v1.0 0
Verticillium_albo-atrum_VaMs.102_ 0
Verticillium_dahliae_VdLs.17_ 0
Fusarium_graminearum_ 0
Fusarium_verticillioides_7600_ 0
Trichoderma_harzianum_CBS_226.95_v1.0 0
Pyrenophora_teres_f._teres_22 0
Zasmidium_cellare_ATCC_36951_v1.0 0
Paracoccidioides_brasiliensis_Pb18_ 0
Ajellomyces_dermatitidis_SLH14081_ 1
Microsporum_canis_CBS_113480_ 1
Trichophyton_equinum_CBS_127.97_ 1
Trichophyton_verrucosum_HKI_0517_ 1
Arthroderma_benhamiae_CBS_112371_ 1
Trichophyton_tonsurans_CBS_112818_ 1
Trichophyton_rubrum_CBS_118892_ 1
Aspergillus_sydowii_v1.0 1
Aspergillus_versicolor_v1.0 1
Aspergillus_tubingensis_v1.0 0
Tuber_melanosporum_Mel28_22 0
Tuber_melanosporum_Vittad_   (Perigord truffle)   0
Candida_tanzawaensis_NRRL_Y-17324__v1.0 0
Candida_tropicalis_MYA-3404_ 0
Candida_albicans_SC5314 0
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 0
Debaromyces_hansenii 0
Wickerhamomyces_anomalus 0
Pichia_pastoris_GS115_ 0
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 0
Vanderwaltozyma_polyspora_DSM_70294_ 0
Lachancea_kluyveri_ 0
Saccharomyces_mikatae_MIT 0
Saccharomyces_cerevisiae_76   (Baker's yeast)   0
Catenaria_anguillulae_PL171_v1.0 0
Dictyostelium_discoideum 0
Dictyostelium_purpureum_ 0
Entamoeba_dispar_1.2 2
Entamoeba_invadens_1.2 9
Entamoeba_histolytica_1 1
Selaginella_moellendorffii_ 2
Pinus_taeda   (Loblolly pine)   3
Picea_abies   (Norway spruce)   1
Eucalyptus_grandis_v201   (Rose gum)   3
Theobroma_cacao_B97-61/B2_v1   (Cacao)   3
Gossypium_raimondii_v221 3
Citrus_clementina_v165 3
Citrus_sinensis_v154   (Sweet orange)   4
Thellungiella_halophila_v173 11
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   13
Capsella_rubella_v183 13
Arabidopsis_lyrata_   (Lyrate rockcress)   12
Arabidopsis_thaliana_10   (Thale cress)   12
Carica_papaya_   (Papaya)   3
Medicago_truncatula_   (Barrel medic)   40
Phaseolus_vulgaris_v186   (French bean)   1
Glycine_max_v109   (Soybean)   2
Cucumis_sativus_v122   (Cucumber)   4
Fragaria_vesca_   (Wild strawberry)   14
Malus_domestica_v196   (Apple)   30
Prunus_persica_v139   (Peach)   7
Linum_usitatissimum_v200   (Flax)   17
Manihot_esculenta_v147   (Cassava)   2
Populus_trichocarpa_v156   (Black cottonwood)   8
Vitis_vinifera_   (Wine grape)   1
Mimulus_guttatus_v140   (Spotted monkey flower)   27
Solanum_lycopersicum_v.2.3   (Tomato)   8
Solanum_tuberosum_   (Potato)   9
Actinidia_chinensis_Hongyang_ 6
Aquilegia_coerulea_v195 11
Triticum_urartu_22 19
Triticum_aestivum_22   (Bread wheat)   43
Aegilops_tauschii_22 37
Brachypodium_distachyon_   (Stiff brome)   15
Oryza_barthii_22   (African wild rice)   8
Oryza_meridionalis_22 3
Oryza_glumaepatula_22 12
Oryza_glaberrima   (African rice)   5
Oryza_punctata_22 9
Oryza_nivara_22 14
Oryza_brachyantha_22   (Malo sina)   4
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   11
Oryza_sativa_v193   (Rice)   11
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   3
Panicum_virgatum_v202   (Switchgrass)   29
Setaria_italica_v164   (Foxtail millet)   7
Zea_mays_subsp._mays_   (Maize)   5
Zea_mays_v181   (Maize)   3
Sorghum_bicolor_   (Sorghum)   7
Musa_balbisiana   (Balbis banana)   1
Musa_acuminata_22   (Wild Malaysian banana)   0
Amborella_trichopoda_22 1
Physcomitrella_patens 4
Chlorella_variabilis_sp._NC64A_ 0
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 1
Chlamydomonas_reinhardtii_4.0 1
Micromonas_pusilla_CCMP1545_v3.0 0
Porphyridium_purpureum_02_2012 1
Thecamonas_trahens_ATCC_50062_ 2
Bigelowiella_natans_CCMP2755_22 0
Giardia_lamblia_2.3 1
Cyanophora_paradoxa_ 3
Trypanosoma_vivax_ 0
Albugo_laibachii_22 0
Pythium_aphanidermatum_DAOM_BR444_22 0
Hyaloperonospora_arabidopsidis_22 0
Phaeodactylum_tricornutumCCAP_1055/1 0
Fragilariopsis_cylindrus 0
Thalassiosira_pseudonana_CCMP1335 1
Perkinsus_marinus_ATCC_50983_ 5
Paramecium_tetraurelia_ 0
Tetrahymena_thermophila_SB210_1_ 11
Ichthyophthirius_multifiliis_strain_G5_ 2
Neospora_caninum 0
Toxoplasma_gondii_VEG 0
Toxoplasma_gondii_ME49 0
Toxoplasma_gondii_GT1 0
Babesia_bovis_T2Bo_ 0
Theileria_parva__ 0
Theileria_annulata 0
Plasmodium_falciparum_3D7_ 0
Plasmodium_vivax_SaI-1_7.0 0
Plasmodium_knowlesi_strain_H_ 1
Plasmodium_yoelii_ssp._yoelii_1_ 0
Symbiodinium_minutum_clade_B1_v1.2 0
Naegleria_gruberi_ 8
Trichomonas_vaginalis_ 0
Guillardia_theta_CCMP2712_v1.0_ 1
Emiliania_huxleyi_CCMP1516_ 0
Microcoleus_sp._PCC_7113 2
Cyanothece_sp._PCC_8802 0
Gloeocapsa_sp._PCC_7428 1
Gloeobacter_violaceus_PCC_7421 2
Rivularia_sp._PCC_7116 1
Calothrix_sp._PCC_7507 1
Anabaena_variabilis_ATCC_29413 1
Nostoc_sp._PCC_7107 1
Nostoc_punctiforme_PCC_73102 1
Nostoc_sp._PCC_7120 1
Nostoc_sp._PCC_7524 1
Mycoplasma_haemocanis_str._Illinois 0
Mycoplasma_wenyonii_str._Massachusetts 0
Mycoplasma_penetrans_HF-2 0
Mycoplasma_agalactiae_PG2 0
Mycoplasma_synoviae_53 1
Mycoplasma_hyorhinis_GDL-1 0
Eggerthella_sp._YY7918 1
Eggerthella_lenta_DSM_2243 0
Olsenella_uli_DSM_7084 0
Catenulispora_acidiphila_DSM_44928 1
Thermobifida_fusca_YX 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 1
Thermomonospora_curvata_DSM_43183 0
Streptosporangium_roseum_DSM_43021 1
Kitasatospora_setae_KM-6054 0
Streptomyces_sp._PAMC26508 1
Streptomyces_flavogriseus_ATCC_33331 1
Streptomyces_sp._SirexAA-E 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 1
Streptomyces_bingchenggensis_BCW-1 0
Streptomyces_violaceusniger_Tu_4113 0
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 0
Actinosynnema_mirum_DSM_43827 1
Saccharomonospora_viridis_DSM_43017 1
Saccharopolyspora_erythraea_NRRL_2338 1
Amycolatopsis_mediterranei_U32 1
Kribbella_flavida_DSM_17836 0
Propionibacterium_propionicum_F0230a 1
Verrucosispora_maris_AB-18-032 1
Micromonospora_sp._L5 0
Micromonospora_aurantiaca_ATCC_27029 0
Segniliparus_rotundus_DSM_44985 1
Tsukamurella_paurometabola_DSM_20162 1
Nocardia_cyriacigeorgica_GUH-2 0
Amycolicicoccus_subflavus_DQS3-9A1 1
Mycobacterium_gilvum_PYR-GCK 0
Mycobacterium_marinum_M 1
Beutenbergia_cavernae_DSM_12333 1
Brachybacterium_faecium_DSM_4810 1
Isoptericola_variabilis_225 1
Xylanimonas_cellulosilytica_DSM_15894 0
[Cellvibrio]_gilvus_ATCC_13127 1
Arthrobacter_phenanthrenivorans_Sphe3 1
Arthrobacter_aurescens_TC1 1
Arthrobacter_sp._Rue61a 1
Arthrobacter_sp._FB24 1
Renibacterium_salmoninarum_ATCC_33209 0
Bifidobacterium_longum_subsp._longum_JDM301 0
Bifidobacterium_dentium_Bd1 1
Bifidobacterium_breve_ACS-071-V-Sch8b 0
Actinomyces_sp._F0330 0
Dehalococcoides_ethenogenes_195 1
Dehalococcoides_sp._BAV1 1
Dehalogenimonas_lykanthroporepellens_BL-DC-9 1
Anaerococcus_prevotii_DSM_20548 0
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 0
Natranaerobius_thermophilus_JW/NM-WN-LF 1
Symbiobacterium_thermophilum_IAM_14863 2
Clostridium_clariflavum_DSM_19732 0
Eubacterium_siraeum 1
Clostridium_thermocellum_ATCC_27405 1
Faecalibacterium_prausnitzii 0
Ruminococcus_bromii 0
Ruminococcus_albus_7 0
Pelotomaculum_thermopropionicum_SI 0
Desulfosporosinus_orientis_DSM_765 1
Syntrophobotulus_glycolicus_DSM_8271 1
Desulfitobacterium_hafniense_Y51 1
Desulfitobacterium_dehalogenans_ATCC_51507 1
Desulfotomaculum_acetoxidans_DSM_771 0
Desulfotomaculum_carboxydivorans_CO-1-SRB 0
Acetobacterium_woodii_DSM_1030 1
Eubacterium_eligens_ATCC_27750 0
Eubacterium_limosum_KIST612 1
Clostridium_phytofermentans_ISDg 2
[Ruminococcus]_torques 0
Coprococcus_sp._ART55/1 1
Roseburia_hominis_A2-183 0
Roseburia_intestinalis 0
Butyrivibrio_fibrisolvens 0
Alkaliphilus_metalliredigens_QYMF 1
Clostridium_novyi_NT 0
Clostridium_ljungdahlii_DSM_13528 0
Clostridium_kluyveri_DSM_555 0
Clostridium_beijerinckii_NCIMB_8052 0
Thermodesulfobium_narugense_DSM_14796 2
Coprothermobacter_proteolyticus_DSM_5265 0
Thermoanaerobacter_tengcongensis_MB4 1
Thermoanaerobacter_pseudethanolicus_ATCC_33223 0
Thermoanaerobacter_brockii_subsp._finnii_Ako-1 0
Tetragenococcus_halophilus_NBRC_12172 0
Melissococcus_plutonius_DAT561 0
Oenococcus_oeni_PSU-1 0
Lactobacillus_rhamnosus_Lc_705 0
Lactobacillus_sakei_subsp._sakei_23K 0
Streptococcus_salivarius_57.I 0
Paenibacillus_mucilaginosus_3016 2
Paenibacillus_polymyxa_M1 0
Solibacillus_silvestris_StLB046 0
Oceanobacillus_iheyensis_HTE831 2
Geobacillus_sp._WCH70 0
Bacillus_sp._JS 0
Bacillus_amyloliquefaciens_FZB42 0
Bacillus_atrophaeus_1942 1
Bacillus_subtilis_subsp._subtilis_str._168 0
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1
Bacillus_pseudofirmus_OF4 0
Bacillus_clausii_KSM-K16 0
Bacillus_cellulosilyticus_DSM_2522 2
Bacillus_megaterium_DSM_319 0
Staphylococcus_haemolyticus_JCSC1435 0
Gemmatimonas_aurantiaca_T-27 1
Chlorobium_limicola_DSM_245 1
Haliscomenobacter_hydrossis_DSM_1100 1
Saprospira_grandis_str._Lewin 0
Niastella_koreensis_GR20-10 0
Chitinophaga_pinensis_DSM_2588 0
Salinibacter_ruber_M8 1
Flexibacter_litoralis_DSM_6794 1
Cyclobacterium_marinum_DSM_745 1
Marivirga_tractuosa_DSM_4126 0
Leadbetterella_byssophila_DSM_17132 1
Dyadobacter_fermentans_DSM_18053 1
Spirosoma_linguale_DSM_74 1
Runella_slithyformis_DSM_19594 1
Tannerella_forsythia_ATCC_43037 1
Paludibacter_propionicigenes_WB4 1
Odoribacter_splanchnicus_DSM_20712 0
Prevotella_melaninogenica_ATCC_25845 1
Prevotella_ruminicola_23 0
Porphyromonas_asaccharolytica_DSM_20707 0
Bacteroides_thetaiotaomicron_VPI-5482 0
Pedobacter_heparinus_DSM_2366 1
Robiginitalea_biformata_HTCC2501 0
Croceibacter_atlanticus_HTCC2559 0
Polaribacter_sp._MED152 0
Ornithobacterium_rhinotracheale_DSM_15997 0
Flavobacterium_psychrophilum_JIP02/86 0
Flavobacterium_johnsoniae_UW101 0
Blattabacterium_sp._(Nauphoeta_cinerea) 0
Candidatus_Protochlamydia_amoebophila_UWE25 1
Simkania_negevensis_Z 1
Chlamydophila_caviae_GPIC 0
Planctomyces_brasiliensis_DSM_5305 0
Fretibacterium_fastidiosum 1
Leptospira_interrogans_serovar_Lai_str._IPAV 0
Borrelia_garinii_PBi 0
Borrelia_afzelii_PKo 0
Sphaerochaeta_pleomorpha_str._Grapes 1
Sphaerochaeta_globus_str._Buddy 1
Thermodesulfobacterium_sp._OPB45 1
Calditerrivibrio_nitroreducens_DSM_19672 2
Denitrovibrio_acetiphilus_DSM_12809 0
Flexistipes_sinusarabici_DSM_4947 0
Kosmotoga_olearia_TBF_19.5.1 0
Thermotoga_lettingae_TMO 1
Thermotoga_thermarum_DSM_5069 1
Sulfurihydrogenibium_sp._YO3AOP1 1
Dictyoglomus_turgidum_DSM_6724 1
Dictyoglomus_thermophilum_H-6-12 1
Candidatus_Chloracidobacterium_thermophilum_B 1
Candidatus_Koribacter_versatilis_Ellin345 0
Thermodesulfovibrio_yellowstonii_DSM_11347 0
Streptobacillus_moniliformis_DSM_12112 0
Acidithiobacillus_ferrivorans_SS3 0
Sulfuricurvum_kujiense_DSM_16994 0
Desulfomonile_tiedjei_DSM_6799 0
Hippea_maritima_DSM_10411 0
Geobacter_uraniireducens_Rf4 1
Sorangium_cellulosum_'So_ce_56' 0
Anaeromyxobacter_sp._Fw109-5 1
Stigmatella_aurantiaca_DW4/3-1 0
Myxococcus_xanthus_DK_1622 0
Janthinobacterium_sp._Marseille 0
Taylorella_asinigenitalis_MCE3 0
Methylovorus_glucosetrophus_SIP3-4 0
Parvularcula_bermudensis_HTCC2503 0
Novosphingobium_sp._PP1Y 0
Hirschia_baltica_ATCC_49814 0
Rhodospirillum_rubrum_F11 0
alpha_proteobacterium_HIMB59 0
Orientia_tsutsugamushi_str._Boryong 0
Rickettsia_australis_str._Cutlack 0
Rickettsia_rickettsii_str._'Sheila_Smith' 0
Rhizobium_leguminosarum_bv._viciae_3841 1
Candidatus_Liberibacter_asiaticus_str._psy62 0
Rhodomicrobium_vannielii_ATCC_17100 1
Bartonella_bacilliformis_KC583 0
Haemophilus_influenzae_PittEE 0
Tolumonas_auensis_DSM_9187 0
Aliivibrio_salmonicida_LFI1238 0
Photobacterium_profundum_SS9 0
Psychromonas_ingrahamii_37 0
Marinobacter_hydrocarbonoclasticus_ATCC_49840 0
Marinobacter_aquaeolei_VT8 0
Candidatus_Carsonella_ruddii_PV 0
Legionella_longbeachae_NSW150 0
Edwardsiella_tarda_EIB202 0
Dickeya_zeae_Ech1591 0
Erwinia_billingiae_Eb661 0
Enterobacter_sp._638 0
Psychrobacter_sp._G 0
Psychrobacter_sp._PRwf-1 1
Francisella_sp._TX077308 0
Nanoarchaeum_equitans_Kin4-M 0
Cenarchaeum_symbiosum_A 1
Candidatus_Korarchaeum_cryptofilum_OPF8 1
Sulfolobus_tokodaii_str._7 0
Sulfolobus_islandicus_Y.N.15.51 0
Sulfolobus_acidocaldarius_DSM_639 0
Thermofilum_sp._1910b 1
Pyrobaculum_sp._1860 1
Pyrobaculum_calidifontis_JCM_11548 1
Pyrobaculum_arsenaticum_DSM_13514 0
Pyrobaculum_oguniense_TE7 1
Thermoproteus_neutrophilus_V24Sta 1
Pyrobaculum_aerophilum_str._IM2 1
Pyrobaculum_islandicum_DSM_4184 1
Methanococcoides_burtonii_DSM_6242 2
Methanosarcina_acetivorans_C2A 4
Methanosarcina_mazei_Go1 1
Methanosphaerula_palustris_E1-9c 1
Methanoplanus_petrolearius_DSM_11571 3
Methanoculleus_bourgensis_MS2 1
Methanoculleus_marisnigri_JR1 2
Thermococcus_sp._4557 1
Thermococcus_kodakarensis_KOD1 1
Thermococcus_gammatolerans_EJ3 1
Halopiger_xanaduensis_SH-6 0
Haloterrigena_turkmenica_DSM_5511 0
Natrialba_magadii_ATCC_43099 0
Halorubrum_lacusprofundi_ATCC_49239 1
Haloferax_mediterranei_ATCC_33500 0
Haloferax_volcanii_DS2 0
Methanocaldococcus_jannaschii_DSM_2661 0
Methanobrevibacter_sp._AbM4 0
Aciduliprofundum_sp._MAR08-339 1
Aciduliprofundum_boonei_T469 2

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   36
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   33
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   15
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   12
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   14
Paracoccidioides_brasiliensis_Pb01_ 0
Paracoccidioides_brasiliensis_Pb03_ 0
Ajellomyces_dermatitidis_ER-3_ 1
Saccharomyces_cerevisiae_UC5 0
Saccharomyces_cerevisiae_PW5 0
Saccharomyces_cerevisiae_FL100 0
Saccharomyces_cerevisiae_CBS7960 0
Saccharomyces_cerevisiae_YJM269 0
Saccharomyces_cerevisiae_T7 0
Saccharomyces_cerevisiae_FostersB 0
Saccharomyces_cerevisiae_FostersO 0
Saccharomyces_cerevisiae_VL3 0
Saccharomyces_cerevisiae_Vin13 0
Saccharomyces_cerevisiae_LalvinQA23 0
Saccharomyces_cerevisiae_AWRI796 0
Saccharomyces_cerevisiae_Sigma1278b 0
Saccharomyces_cerevisiae_W303 0
Saccharomyces_cerevisiae_JAY291 0
Saccharomyces_cerevisiae_AWRI1631 0
Saccharomyces_cerevisiae_M22 0
Saccharomyces_cerevisiae_T73 0
Saccharomyces_cerevisiae_CLIB215 0
Saccharomyces_cerevisiae_Y10 0
Saccharomyces_cerevisiae_YJM789_ 0
Saccharomyces_cerevisiae_YJM789 0
Saccharomyces_cerevisiae_RM11-1a 0
Saccharomyces_cerevisiae_RM11-1a_ 0
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   0
Batrachochytrium_dendrobatidis_JEL423_ 0
Batrachochytrium_dendrobatidis_JAM81_ 0
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   2
Hordeum_vulgare_22   (Domesticated barley)   13
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   14
Neospora_caninum_Nc-Liverpool_6.2 0
Plasmodium_falciparum_HB3_ 0
Plasmodium_falciparum_Dd2_ 0
Synechococcus_sp._JA-2-3B'a(2-13) 1
Synechococcus_sp._JA-3-3Ab 1
Crinalium_epipsammum_PCC_9333 0
Oscillatoria_nigro-viridis_PCC_7112 1
Oscillatoria_acuminata_PCC_6304 2
Arthrospira_platensis_NIES-39 1
Cyanothece_sp._PCC_7822 1
Cyanothece_sp._PCC_7425 1
Cyanothece_sp._PCC_7424 1
Cyanothece_sp._ATCC_51142 1
Cyanothece_sp._PCC_8801 0
Cyanobacterium_stanieri_PCC_7202 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 2
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1
Calothrix_parietina_Calothrix_sp._PCC_6303 1
Spiroplasma_diminutum_CUAS-1 0
Mycoplasma_hyorhinis_MCLD 0
Mycoplasma_hyorhinis_DBS_1050 0
Gordonibacter_pamelaeae_7-10-1-b 0
Frankia_sp._EuI1c 1
Nocardiopsis_alba_ATCC_BAA-2165 1
Streptomyces_albus_J1074 0
Streptomyces_rapamycinicus_NRRL_5491 0
Streptomyces_davawensis_JCM_4913 0
Streptomyces_fulvissimus_DSM_40593 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 0
Saccharothrix_espanaensis_DSM_44229 1
Amycolatopsis_mediterranei_RB 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_orientalis_HCCB10007 1
Mycobacterium_liflandii_128FXT 1
Mycobacterium_kansasii_ATCC_12478 0
Gardnerella_vaginalis_HMP9231 0
Gardnerella_vaginalis_ATCC_14019 0
Bifidobacterium_longum_NCC2705 0
Bifidobacterium_longum_DJO10A 0
Bifidobacterium_longum_subsp._infantis_157F 0
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 0
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 0
Bifidobacterium_longum_subsp._longum_KACC_91563 0
Bifidobacterium_longum_subsp._longum_BBMN68 0
Bifidobacterium_longum_subsp._longum_F8 0
Bifidobacterium_longum_subsp._longum_JCM_1217 0
Bifidobacterium_breve_UCC2003 0
Actinomyces_graevenitzii_C83_ 0
Actinomyces_viscosus_C505 1
Dehalococcoides_mccartyi_GY50 1
Dehalococcoides_mccartyi_DCMB5 1
Dehalococcoides_mccartyi_BTF08 1
Dehalococcoides_sp._GT 1
Dehalococcoides_sp._VS 1
Dehalococcoides_sp._CBDB1 1
Clostridium_thermocellum_DSM_1313 1
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 2
Desulfosporosinus_meridiei_DSM_13257 0
Desulfitobacterium_dichloroeliminans_LMG_P-21439 1
Desulfitobacterium_hafniense_DCB-2 1
Desulfotomaculum_gibsoniae_DSM_7213 2
Roseburia_intestinalis_XB6B4 1
Clostridium_sp._SY8519 1
Clostridium_saccharobutylicum_DSM_13864 0
Clostridium_autoethanogenum_DSM_10061 0
Clostridium_kluyveri_NBRC_12016 0
Clostridium_tetani_genome_12124569 0
Melissococcus_plutonius_ATCC_35311 0
Enterococcus_faecium_NRRL_B-2354 0
Lactobacillus_rhamnosus_LOCK908 0
Lactobacillus_rhamnosus_LOCK900 0
Lactobacillus_rhamnosus_ATCC_8530 0
Lactobacillus_johnsonii_NCC_533 0
Lactobacillus_salivarius_UCC118 0
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_11842 0
Lactobacillus_acidophilus_La-14 0
Lactobacillus_acidophilus_NCFM 0
Streptococcus_oligofermentans_AS_1.3089 0
Streptococcus_salivarius_CCHSS3 0
Paenibacillus_sp._Y412MC10 1
Paenibacillus_mucilaginosus_KNP414 2
Paenibacillus_mucilaginosus_K02 2
Paenibacillus_polymyxa_SC2 0
Bacillus_amyloliquefaciens_CC178 0
Bacillus_licheniformis_9945A 1
Bacillus_subtilis_PY79 0
Bacillus_subtilis_XF-1 0
Bacillus_subtilis_QB928 0
Bacillus_subtilis_BSn5 0
Bacillus_subtilis_subsp._subtilis_str._BSP1 0
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 0
Bacillus_subtilis_subsp._subtilis_6051-HGW 0
Bacillus_subtilis_subsp._spizizenii_TU-B-10 1
Bacillus_subtilis_subsp._spizizenii_str._W23 1
Bacillus_subtilis_subsp._natto_BEST195 0
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1
Bacillus_megaterium_QM_B1551 0
Staphylococcus_pasteuri_SP1 0
Staphylococcus_aureus_subsp._aureus_SA957 0
Staphylococcus_aureus_subsp._aureus_M013 0
Chlorobium_phaeobacteroides_BS1 1
Salinibacter_ruber_DSM_13855 1
Echinicola_vietnamensis_DSM_17526 0
Emticicia_oligotrophica_DSM_17448 1
Bacteroides_xylanisolvens_XB1A 0
Nonlabens_dokdonensis_DSW-6 0
Leptospira_interrogans_serovar_Lai_str._56601 0
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 0
Brachyspira_pilosicoli_WesB 0
Borrelia_valaisiana_VS116 0
Borrelia_garinii_BgVir 0
Borrelia_afzelii_PKo 0
Campylobacter_jejuni_Waterborne_C.jejuni_Outbreak 0
Campylobacter_jejuni_RM1221 0
Campylobacter_jejuni_subsp._jejuni_00-2544 0
Campylobacter_jejuni_subsp._jejuni_00-2538 0
Campylobacter_jejuni_subsp._jejuni_00-2426 0
Campylobacter_jejuni_subsp._jejuni_00-2425 0
Campylobacter_jejuni_subsp._jejuni_PT14 0
Campylobacter_jejuni_subsp._jejuni_S3 0
Campylobacter_jejuni_subsp._jejuni_IA3902 0
Campylobacter_jejuni_subsp._jejuni_81-176 0
Campylobacter_jejuni_subsp._jejuni_NCTC_11168-BN148 0
Campylobacter_jejuni_subsp._jejuni_NCTC_11168_=_ATCC_700819 0
Helicobacter_pylori_BM012S 0
Helicobacter_pylori_BM012A 0
Helicobacter_pylori_ELS37 0
Geobacter_sp._M18 1
Sorangium_cellulosum_So0157-2 2
Myxococcus_stipitatus_DSM_14675 1
Rhodobacter_sphaeroides_ATCC_17025 0
Rhodospirillum_rubrum_ATCC_11170 0
Acetobacter_pasteurianus_386B 0
Candidatus_Pelagibacter_ubique_HTCC1062 0
Orientia_tsutsugamushi_str._Ikeda 0
Rickettsia_bellii_RML369-C 0
Rickettsia_rickettsii_str._Arizona 0
Rickettsia_rickettsii_str._Brazil 0
Rickettsia_rickettsii_str._Hauke 0
Rickettsia_rickettsii_str._Colombia 0
Rickettsia_rickettsii__str._Hlp#2 0
Rickettsia_rickettsii_str._Hino 0
Rickettsia_rickettsii_str._Iowa 0
Brucella_abortus_bv._1_str._9-941 0
Rhizobium_etli_CFN_42 1
Rhizobium_etli_bv._mimosae_str._Mim1 1
Rhizobium_leguminosarum_bv._trifolii_WSM2304 1
Rhizobium_leguminosarum_bv._trifolii_WSM1325 1
Candidatus_Liberibacter_asiaticus_str._gxpsy 0
Mannheimia_haemolytica_USDA-ARS-USMARC-183 0
Haemophilus_influenzae_KR494 0
Haemophilus_influenzae_F3031 0
Haemophilus_influenzae_R2846 0
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 0
Shewanella_baltica_BA175 0
Shewanella_baltica_OS117 0
Shewanella_sp._MR-7 0
Glaciecola_psychrophila_170 0
Edwardsiella_tarda_C07-087 0
Dickeya_dadantii_Ech586 0
Raoultella_ornithinolytica_B6 0
Klebsiella_pneumoniae_342 0
Escherichia_coli_SMS-3-5 0
Escherichia_coli_O127:H6_str._E2348/69 0
Pseudomonas_syringae_pv._phaseolicola_1448A 0
Pseudomonas_fluorescens_A506 0
Pseudomonas_mendocina_NK-01 0
Sulfolobus_acidocaldarius_Ron12/I 0
Sulfolobus_acidocaldarius_N8 0
Methanosarcina_mazei_Tuc01 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1
Thermococcus_sp._AM4 1
Thermococcus_litoralis_DSM_5473 1
Halorhabdus_tiamatea_SARL4B 0

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   30
Pan_troglodytes_69_2.1.4   (Chimpanzee)   27
Gorilla_gorilla_69_3.1   (Western gorilla)   29
Pongo_abelii_69_2   (Sumatran orangutan)   29
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   29
Macaca_mulatta_69_1   (Rhesus monkey)   32
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   34
Otolemur_garnettii_69_3   (Small-eared galago)   30
Microcebus_murinus_69_1   (Gray mouse lemur)   27
Rattus_norvegicus_69_3.4   (Norway rat)   39
Mus_musculus_69_38   (House mouse)   56
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   19
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   37
Cavia_porcellus_69_3   (Domestic guinea pig)   43
Oryctolagus_cuniculus_69_2   (Rabbit)   31
Ochotona_princeps_69   (American pika)   23
Tupaia_belangeri_69   (Northern tree shrew)   19
Sus_scrofa_69_10.2   (Pig)   35
Bos_taurus_69_3.1   (Cattle)   40
Vicugna_pacos_69_1   (Alpaca)   22
Tursiops_truncatus_69_1   (Bottlenose dolphin)   22
Mustela_putorius_furo_69_1.0   (Domestic ferret)   27
Ailuropoda_melanoleuca_69_1   (Giant panda)   29
Canis_familiaris_69_3.1   (Dog)   29
Felis_catus_69   (Domestic cat)   19
Equus_caballus_69_2   (Horse)   37
Myotis_lucifugus_69_2.0   (Little brown bat)   38
Pteropus_vampyrus_69_1   (Large flying fox)   22
Sorex_araneus_69_1   (European shrew)   22
Erinaceus_europaeus_69   (Western European hedgehog)   19
Procavia_capensis_69_1   (Cape rock hyrax)   21
Loxodonta_africana_69_3   (African savanna elephant)   28
Echinops_telfairi_69   (Small Madagascar hedgehog)   14
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   20
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   12
Macropus_eugenii_69_1.0   (Tammar wallaby)   15
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   27
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   25
Ornithorhynchus_anatinus_69_5   (Platypus)   30
Petromyzon_marinus_69_7.0   (Sea lamprey)   8
Meleagris_gallopavo_69_2   (Turkey)   18
Gallus_gallus_69_2   (Chicken)   22
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   23
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   24
Anolis_carolinensis_69_2.0   (Green anole)   25
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   17
Latimeria_chalumnae_69_1   (Coelacanth)   12
Gadus_morhua_69_1   (Atlantic cod)   16
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   18
Takifugu_rubripes_69_4   (Torafugu)   22
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   19
Oryzias_latipes_69_1   (Japanese medaka)   15
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   17
Oreochromis_niloticus_69_1.0   (Nile tilapia)   23
Danio_rerio_69_9   (Zebrafish)   25
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   5
Ciona_intestinalis_69   (Vase tunicate)   10
Drosophila_melanogaster_69_5   (Fruit fly)   20
Caenorhabditis_elegans_69_215   (Roundworm)   11
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   0
Arabidopsis_thaliana_10   (Thale cress)   12

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   147
Homo_sapiens__(NCBI_version)   (Human)   51
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   56
Heliconius_numata__(Incomplete) 41
Loa_loa_v3.3_(Request)   (Eye worm)   18
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   11
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   14
Lotus_japonicus__(Early_assembly) 59
Malus_x_domestica_(Duplicate)   (Apple)   30
Ricinus_communis__(Early_assembly)   (Castor bean)   6
Nicotiana_benthamiana_0.4.4_(Early_draft) 14
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   8
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   8
NCBI_plasmid_sequences_(Plasmids) 6
STRING_v9.0.5_(STRING) 1256
PDB_chains_(SCOP_1.75)_(PDB) 62
Uniprot_2018_03_genome 14261
NCBI_2017_08_genome 15084
TargetDB__(Targets) 24
NCBI_viral_sequences_(Viral) 73
Protozoadb_2010_08_(Protozoadb) 10
UniProt__viral_sequences_(Viral) 207
Protein_Data_Bank_(all_PDB_sequenc) 366
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1200

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.