SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > SCOP hierarchy > Domain combination - 56801,_gap_

Domain combinations for 56801,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

56801 - Acetyl-CoA synthetase-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   14
Pan_troglodytes_76_2.1.4   (Chimpanzee)   2
Gorilla_gorilla_76_3.1   (Western gorilla)   2
Pongo_abelii_76_2   (Sumatran orangutan)   3
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   2
Papio_anubis_76   (Olive baboon)   5
Macaca_mulatta_76_1   (Rhesus monkey)   9
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   11
Otolemur_garnettii_76_3   (Small-eared galago)   2
Microcebus_murinus_76_1   (Gray mouse lemur)   2
Rattus_norvegicus_76_5.0   (Norway rat)   5
Mus_musculus_76_38   (House mouse)   7
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   3
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1
Cavia_porcellus_76_3   (Domestic guinea pig)   4
Oryctolagus_cuniculus_76_2   (Rabbit)   6
Ochotona_princeps_76   (American pika)   2
Tupaia_belangeri_76   (Northern tree shrew)   1
Sus_scrofa_76_10.2   (Pig)   5
Bos_taurus_76_3.1   (Cattle)   5
Ovis_aries_76_3.1   (Sheep)   4
Vicugna_pacos_76_1   (Alpaca)   1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   3
Ailuropoda_melanoleuca_76_1   (Giant panda)   5
Canis_familiaris_76_3.1   (Dog)   8
Felis_catus_76_6.2   (Domestic cat)   5
Equus_caballus_76_2   (Horse)   4
Myotis_lucifugus_76_2.0   (Little brown bat)   2
Pteropus_vampyrus_76_1   (Large flying fox)   1
Sorex_araneus_76_1   (European shrew)   0
Erinaceus_europaeus_76   (Western European hedgehog)   2
Procavia_capensis_76_1   (Cape rock hyrax)   0
Loxodonta_africana_76_3   (African savanna elephant)   3
Echinops_telfairi_76   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   4
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   2
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   3
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   5
Ornithorhynchus_anatinus_76_5   (Platypus)   5
Saccoglossus_kowalevskii_v3.0 13
Petromyzon_marinus_76_7.0   (Sea lamprey)   2
Meleagris_gallopavo_76_2   (Turkey)   3
Gallus_gallus_76_4   (Chicken)   4
Anas_platyrhynchos_76_1.0   (Mallard)   2
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   3
Ficedula_albicollis_76_1.0   (Collared flycatcher)   3
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_76_2.0   (Green anole)   1
Xenopus_laevis_   (African clawed frog)   2
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   2
Latimeria_chalumnae_76_1   (Coelacanth)   6
Lepisosteus_oculatus_76   (Spotted gar)   2
Gadus_morhua_76_1   (Atlantic cod)   7
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   14
Takifugu_rubripes_76_4   (Torafugu)   18
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   7
Oryzias_latipes_76_1   (Japanese medaka)   2
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   4
Poecilia_formosa_76   (Amazon molly)   1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   5
Astyanax_mexicanus_76   (Mexican tetra)   3
Danio_rerio_76_9   (Zebrafish)   5
Oikopleura_dioica 4
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   9
Ciona_intestinalis_76   (Vase tunicate)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   5
Adineta_vaga 22
Octopus_bimaculoides_280 8
Crassostrea_gigas_22   (Pacific oyster)   3
Lottia_gigantea_   (Owl limpet)   6
Helobdella_robusta_ 6
Capitella_sp._I_ 6
Danaus_plexippus_OGS1.0   (Monarch butterfly)   5
Heliconius_melpomene_   (Postman butterfly)   4
Bombyx_mori_   (Domestic silkworm)   2
Nasonia_vitripennis_   (Jewel wasp)   4
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   7
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3
Linepithema_humile_v1.1   (Argentine ant)   4
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   4
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   4
Atta_cephalotes_v1.1 5
Camponotus_floridanus_v3.3   (Florida carpenter ant)   4
Lucilia_cuprina   (Australian sheep blowfly)   2
Drosophila_grimshawi_1.3 3
Drosophila_willistoni_1.3 4
Drosophila_pseudoobscura_2.13 3
Drosophila_persimilis_1.3 3
Drosophila_suzukii 0
Drosophila_yakuba_1.3 4
Drosophila_simulans_1.3 4
Drosophila_sechellia_1.3 3
Drosophila_melanogaster_76_5   (Fruit fly)   9
Drosophila_erecta_1.3 3
Drosophila_ananassae_1.3 4
Drosophila_virilis_1.2 5
Drosophila_mojavensis_1.3 3
Megaselia_scalaris_22 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   2
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   4
Anopheles_darlingi_22   (American malaria mosquito)   3
Anopheles_gambiae_49_3j   (African malaria mosquito)   3
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3
Acyrthosiphon_pisum_   (Pea aphid)   4
Rhodnius_prolixus_22 4
Daphnia_pulex_   (Common water flea)   3
Strigamia_maritima_22 10
Sarcoptes_scabiei 3
Tetranychus_urticae_   (Two-spotted spider mite)   1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   6
Pristionchus_pacificus_ 8
Meloidogyne_incognita_   (Southern root-knot nematode)   1
Meloidogyne_hapla_ 1
Onchocerca_volvulus_22 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   3
Caenorhabditis_japonica_ 5
Caenorhabditis_brenneri_ 5
Caenorhabditis_remanei_ 3
Caenorhabditis_elegans_76_235   (Roundworm)   4
Caenorhabditis_briggsae_2 3
Trichinella_spiralis_22 1
Hymenolepis_microstoma_ 6
Echinococcus_multilocularis_ 3
Echinococcus_granulosus_ 4
Taenia_solium_   (Pork tapeworm)   4
Schistosoma_mansoni_ 6
Mnemiopsis_leidyi   (Sea walnut)   6
Thelohanellus_kitauei 1
Acropora_digitifera_v1.0 2
Nematostella_vectensis_1.0   (Starlet sea anemone)   4
Hydra_vulgaris 0
Amphimedon_queenslandica 13
Trichoplax_adhaerens_ 2
Proterospongia_sp._ATCC_50818_ 7
Monosiga_brevicollis_ 6
Sphaeroforma_arctica_JP610_ 13
Capsaspora_owczarzaki_ATCC_30864_ 9
Conidiobolus_coronatus_NRRL28638_v1.0 12
Mortierella_verticillata_NRRL_6337_ 12
Phycomyces_blakesleeanus_ 7
Rhizopus_oryzae_RA_99-880_ 8
Mucor_circinelloides_ 9
Rhizomucor_miehei_CAU432_ 7
Malassezia_globosa_CBS_7966_ 6
Sporisorium_reilianum_22 3
Ustilago_maydis_ 5
Mixia_osmundae_IAM_14324_v1.0 2
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 5
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 5
Melampsora_laricis-populina_ 5
Rhodotorula_graminis_WP1_v1.0 2
Sporobolomyces_roseus_IAM_13481_ 4
Microbotryum_violaceum_22 3
Wallemia_sebi_v1.0 1
Sphaerobolus_stellatus_v1.0 5
Piloderma_croceum_F_1598_v1.0 5
Serpula_lacrymans_var._lacrymans_S7.9_ 4
Coniophora_puteana 2
Hydnomerulius_pinastri_v2.0 2
Paxillus_rubicundulus_Ve08.2h10_v1.0 3
Pisolithus_microcarpus_441_v1.0 3
Pisolithus_tinctorius_Marx_270_v1.0 4
Scleroderma_citrinum_Foug_A_v1.0 2
Coprinopsis_cinerea_okayama7_130_v3 8
Pleurotus_ostreatus_   (Oyster mushroom)   4
Amanita_thiersii_Skay4041_v1.0 2
Amanita_muscaria_Koide_v1.0   (Fly agaric)   2
Galerina_marginata_v1.0 6
Hebeloma_cylindrosporum_h7_v2.0 3
Laccaria_bicolor_S238N-H82_ 2
Agaricus_bisporus_var._bisporus_ 4
Schizophyllum_commune_ 4
Stereum_hirsutum_FP-91666_SS1__v1.0 3
Heterobasidion_annosum_ 4
Gloeophyllum_trabeumv1.0 3
Punctularia_strigosozonata_v1.0 2
Sebacina_vermifera_MAFF_305830_v1.0 3
Fomitiporia_mediterranea_v1.0 3
Tulasnella_calospora_AL13/4D_v1.0 4
Postia_placenta_ 4
Wolfiporia_cocos_MD-104_SS10__v1.0 2
Fomitopsis_pinicolav1.0 2
Fomitopsis_pinicola_FP-58527_SS1_v3.0 2
Phanerochaete_chrysosporium_RP-78_2.1 3
Dichomitus_squalens 4
Trametes_versicolor_v1.0 4
Tremella_mesenterica_   (Witches' butter)   2
Daldinia_eschscholzii_EC12_v1.0 7
Apiospora_montagnei_NRRL_25634_v1.0 8
Magnaporthe_poae_ATCC_64411_22 10
Magnaporthe_grisea_70-15_ 11
Podospora_anserina_ 9
Sporotrichum_thermophile_ATCC_42464_ 7
Thielavia_terrestris_NRRL_8126_ 8
Chaetomium_globosum_CBS_148.51_ 8
Neurospora_tetrasperma_ 7
Neurospora_discreta_FGSC_8579_ 6
Neurospora_crassa_OR74A_ 6
Cryphonectria_parasitica_   (Chestnut blight fungus)   8
Verticillium_albo-atrum_VaMs.102_ 8
Verticillium_dahliae_VdLs.17_ 8
Acremonium_alcalophilumv_1.0 6
Glomerella_graminicola_22 9
Fusarium_graminearum_ 10
Nectria_haematococca_mpVI_ 8
Fusarium_oxysporum_f._sp._lycopersici_4286_ 5
Fusarium_verticillioides_7600_ 9
Trichoderma_asperellum_CBS_433.97_v1.0 5
Trichoderma_atroviride_ 5
Trichoderma_citrinoviride_v1.0 5
Trichoderma_reesei_1.2 4
Trichoderma_virens_Gv29-8_ 5
Trichoderma_longibrachiatum_ATCC_18648_v1.0 3
Trichoderma_harzianum_CBS_226.95_v1.0 6
Amorphotheca_resinae_v1.0   (Creosote fungus)   7
Botrytis_cinerea_B05.10_ 8
Sclerotinia_sclerotiorum_ 4
Blumeria_graminis_22 5
Didymella_exigua_CBS_183.55_v1.0 9
Leptosphaeria_maculans_22 7
Setosphaeria_turcica_v1.0 10
Cochliobolus_miyabeanus_ATCC_44560_v1.0 9
Cochliobolus_victoriae_FI3_v1.0 7
Cochliobolus_carbonum_26-R-13_v1.0 9
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   9
Alternaria_brassicicola_ 7
Cochliobolus_lunatus_m118_v2.0 11
Pyrenophora_teres_f._teres_22 9
Pyrenophora_tritici-repentis_ 9
Stagonospora_nodorum_ 10
Mycosphaerella_graminicola_IPO323_ 7
Zasmidium_cellare_ATCC_36951_v1.0 7
Dothistroma_septosporum 11
Septoria_musiva_v1.0 8
Mycosphaerella_fijiensis_CIRAD86_ 7
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 7
Paracoccidioides_brasiliensis_Pb18_ 7
Coccidioides_posadasii_RMSCC_3488_ 6
Coccidioides_immitis_RS_ 6
Ajellomyces_dermatitidis_SLH14081_ 9
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 7
Microsporum_canis_CBS_113480_ 9
Trichophyton_equinum_CBS_127.97_ 7
Trichophyton_verrucosum_HKI_0517_ 8
Arthroderma_benhamiae_CBS_112371_ 9
Trichophyton_tonsurans_CBS_112818_ 5
Trichophyton_rubrum_CBS_118892_ 8
Uncinocarpus_reesii_1704_ 6
Aspergillus_zonatus_v1.0 6
Penicillium_chrysogenum_Wisconsin_54-1255_ 9
Penicillium_chrysogenum_v1.0 9
Aspergillus_acidus_v1.0 5
Aspergillus_fumigatus_Af293 6
Aspergillus_brasiliensis_v1.0 7
Aspergillus_nidulans_FGSC_A4_ 8
Aspergillus_sydowii_v1.0 9
Aspergillus_versicolor_v1.0 10
Aspergillus_glaucus 4
Aspergillus_carbonarius_ITEM_5010_ 7
Neosartorya_fischeri_NRRL_181_ 7
Aspergillus_terreus_NIH2624_ 10
Aspergillus_tubingensis_v1.0 7
Aspergillus_wentii_v1.0 7
Aspergillus_oryzae_RIB40_ 8
Aspergillus_niger_22 8
Aspergillus_niger_ATCC_1015_ 5
Aspergillus_flavus_NRRL3357_ 9
Aspergillus_clavatus_NRRL_1_ 7
Penicillium_marneffei_ATCC_18224_ 8
Tuber_melanosporum_Mel28_22 5
Tuber_melanosporum_Vittad_   (Perigord truffle)   5
Hansenula_polymorpha_v2.0 1
Dekkera_bruxellensis_CBS_2499_v2.0 2
Pichia_membranifaciensv1.0 2
Candida_tanzawaensis_NRRL_Y-17324__v1.0 2
Candida_dubliniensis_CD36_ 2
Candida_tropicalis_MYA-3404_ 3
Candida_parapsilosis_ 2
Candida_albicans_SC5314 2
Lodderomyces_elongisporus_NRRL_YB-4239_ 2
Babjeviella_inositovora_NRRL_Y-12698_v1.0 9
Pichia_stipitis_CBS_6054_ 3
Candida_guilliermondii_ATCC_6260_ 1
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 2
Debaromyces_hansenii 2
Wickerhamomyces_anomalus 6
Pichia_pastoris_GS115_ 2
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1
Yarrowia_lipolytica_CLIB122 3
Candida_lusitaniae_ATCC_42720_ 2
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 2
Vanderwaltozyma_polyspora_DSM_70294_ 3
Candida_glabrata_CBS138 3
Kluyveromyces_thermotolerans_CBS_6340 2
Lachancea_kluyveri_ 2
Kluyveromyces_waltii 1
Ashbya_gossypii_ATCC_10895_ 2
Zygosaccharomyces_rouxii_ 2
Saccharomyces_mikatae_MIT 4
Saccharomyces_paradoxus_MIT 5
Saccharomyces_cerevisiae_76   (Baker's yeast)   4
Saccharomyces_bayanus_MIT 2
Kluyveromyces_lactis 2
Schizosaccharomyces_cryophilus_OY26_22 2
Schizosaccharomyces_octosporus_yFS286_ 2
Schizosaccharomyces_japonicus_yFS275_ 2
Schizosaccharomyces_pombe   (Fission yeast)   2
Catenaria_anguillulae_PL171_v1.0 6
Allomyces_macrogynus_ATCC_38327_ 17
Spizellomyces_punctatus_DAOM_BR117_ 5
Dictyostelium_discoideum 5
Dictyostelium_purpureum_ 17
Entamoeba_dispar_1.2 8
Entamoeba_invadens_1.2 12
Entamoeba_histolytica_1 10
Selaginella_moellendorffii_ 11
Pinus_taeda   (Loblolly pine)   5
Picea_abies   (Norway spruce)   5
Eucalyptus_grandis_v201   (Rose gum)   12
Theobroma_cacao_B97-61/B2_v1   (Cacao)   8
Gossypium_raimondii_v221 35
Citrus_clementina_v165 10
Citrus_sinensis_v154   (Sweet orange)   23
Thellungiella_halophila_v173 14
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   12
Capsella_rubella_v183 7
Arabidopsis_lyrata_   (Lyrate rockcress)   10
Arabidopsis_thaliana_10   (Thale cress)   10
Carica_papaya_   (Papaya)   7
Medicago_truncatula_   (Barrel medic)   18
Phaseolus_vulgaris_v186   (French bean)   12
Glycine_max_v109   (Soybean)   26
Cucumis_sativus_v122   (Cucumber)   15
Fragaria_vesca_   (Wild strawberry)   6
Malus_domestica_v196   (Apple)   13
Prunus_persica_v139   (Peach)   7
Linum_usitatissimum_v200   (Flax)   19
Manihot_esculenta_v147   (Cassava)   10
Populus_trichocarpa_v156   (Black cottonwood)   18
Vitis_vinifera_   (Wine grape)   6
Mimulus_guttatus_v140   (Spotted monkey flower)   8
Solanum_lycopersicum_v.2.3   (Tomato)   12
Solanum_tuberosum_   (Potato)   13
Actinidia_chinensis_Hongyang_ 8
Aquilegia_coerulea_v195 23
Triticum_urartu_22 6
Triticum_aestivum_22   (Bread wheat)   30
Aegilops_tauschii_22 9
Brachypodium_distachyon_   (Stiff brome)   11
Oryza_barthii_22   (African wild rice)   18
Oryza_meridionalis_22 15
Oryza_glumaepatula_22 15
Oryza_glaberrima   (African rice)   9
Oryza_punctata_22 17
Oryza_nivara_22 12
Oryza_brachyantha_22   (Malo sina)   12
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   24
Oryza_sativa_v193   (Rice)   24
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   9
Panicum_virgatum_v202   (Switchgrass)   19
Setaria_italica_v164   (Foxtail millet)   14
Zea_mays_subsp._mays_   (Maize)   11
Zea_mays_v181   (Maize)   15
Sorghum_bicolor_   (Sorghum)   10
Musa_balbisiana   (Balbis banana)   9
Musa_acuminata_22   (Wild Malaysian banana)   10
Amborella_trichopoda_22 11
Physcomitrella_patens 10
Coccomyxa_subellipsoidea_sp._C-169_v2 4
Asterochloris_sp._Cgr/DA1pho_v1.0 2
Chlorella_variabilis_sp._NC64A_ 5
Chlorella_vulgaris_ 4
Volvox_carteri_f._nagariensis_ 6
Volvox_carteri_v199 5
Chlamydomonas_reinhardtii_4.0 5
Ostreococcus_sp._RCC809_ 3
Ostreococcus_lucimarinus_CCE9901_ 3
Ostreococcus_tauri_ 3
Bathycoccus_prasinos_ 2
Micromonas_sp._RCC299_ 3
Micromonas_pusilla_CCMP1545_v3.0 5
Cyanidioschyzon_merolae_strain_10D_22 3
Cyanidioschyzon_merolae 3
Porphyridium_purpureum_02_2012 6
Thecamonas_trahens_ATCC_50062_ 4
Bigelowiella_natans_CCMP2755_22 3
Giardia_lamblia_2.3 1
Cyanophora_paradoxa_ 1
Leishmania_mexicana_2.4 4
Leishmania_major_strain_Friedlin_ 3
Leishmania_infantum_JPCM5_2.4 4
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 4
Trypanosoma_vivax_ 2
Trypanosoma_cruzi_strain_CL_Brener 4
Trypanosoma_congolense_2.4 1
Trypanosoma_brucei_gambiense_v4.1 1
Trypanosoma_brucei_TREU927_v4.1 2
Ectocarpus_siliculosus 6
Aureococcus_anophagefferens_ 7
Albugo_laibachii_22 1
Pythium_iwayamai_DAOM_BR242034_22 7
Pythium_arrhenomanes_ATCC_12531_22 6
Pythium_ultimum_v1.7-2 11
Pythium_aphanidermatum_DAOM_BR444_22 5
Pythium_irregulare_DAOM_BR486_22 5
Pythium_vexans_DAOM_BR484_22 8
Phytophthora_ramorum_1.1   (Sudden oak death agent)   10
Phytophthora_sojae_1.1 10
Phytophthora_infestans_T30-4_ 8
Phytophthora_capsici_ 8
Hyaloperonospora_arabidopsidis_22 3
Phaeodactylum_tricornutumCCAP_1055/1 5
Fragilariopsis_cylindrus 11
Thalassiosira_pseudonana_CCMP1335 7
Perkinsus_marinus_ATCC_50983_ 8
Paramecium_tetraurelia_ 13
Tetrahymena_thermophila_SB210_1_ 18
Ichthyophthirius_multifiliis_strain_G5_ 8
Cryptosporidium_hominis 3
Cryptosporidium_muris 2
Cryptosporidium_parvum_Iowa_II 2
Neospora_caninum 2
Toxoplasma_gondii_VEG 2
Toxoplasma_gondii_ME49 2
Toxoplasma_gondii_GT1 2
Babesia_bovis_T2Bo_ 21
Theileria_parva__ 4
Theileria_annulata 2
Plasmodium_falciparum_3D7_ 1
Plasmodium_vivax_SaI-1_7.0 1
Plasmodium_knowlesi_strain_H_ 1
Plasmodium_yoelii_ssp._yoelii_1_ 1
Plasmodium_chabaudi_ 1
Plasmodium_berghei_ANKA_ 1
Symbiodinium_minutum_clade_B1_v1.2 11
Naegleria_gruberi_ 6
Trichomonas_vaginalis_ 15
Guillardia_theta_CCMP2712_v1.0_ 6
Emiliania_huxleyi_CCMP1516_ 14
Leptolyngbya_sp._PCC_7376 2
Pseudanabaena_sp._PCC_7367 1
Acaryochloris_marina_MBIC11017 6
Synechocystis_sp._PCC_6803 1
Thermosynechococcus_sp._NK55 1
Thermosynechococcus_elongatus_BP-1 1
Synechococcus_sp._PCC_7502 1
Synechococcus_sp._CC9311 1
Synechococcus_elongatus_PCC_7942 1
Prochlorococcus_marinus_str._MIT_9515 1
Microcoleus_sp._PCC_7113 1
Trichodesmium_erythraeum_IMS101 3
Geitlerinema_sp._PCC_7407 2
Cyanothece_sp._PCC_8802 2
Gloeocapsa_sp._PCC_7428 1
cyanobacterium_UCYN-A 1
Halothece_sp._PCC_7418 1
Microcystis_aeruginosa_NIES-843 2
Gloeobacter_violaceus_PCC_7421 2
Rivularia_sp._PCC_7116 3
Calothrix_sp._PCC_7507 2
Anabaena_variabilis_ATCC_29413 2
'Nostoc_azollae'_0708 1
Nostoc_sp._PCC_7107 1
Nostoc_punctiforme_PCC_73102 3
Nostoc_sp._PCC_7120 2
Nostoc_sp._PCC_7524 2
Anabaena_sp._90 1
Conexibacter_woesei_DSM_14684 2
Rubrobacter_xylanophilus_DSM_9941 2
Ilumatobacter_coccineus 2
Thermobispora_bispora_DSM_43833 2
Nakamurella_multipartita_DSM_44233 3
Acidothermus_cellulolyticus_11B 1
Modestobacter_marinus 1
Blastococcus_saxobsidens_DD2 2
Geodermatophilus_obscurus_DSM_43160 1
Kineococcus_radiotolerans_SRS30216 1
Catenulispora_acidiphila_DSM_44928 4
Stackebrandtia_nassauensis_DSM_44728 1
Frankia_symbiont_of_Datisca_glomerata 3
Frankia_sp._EAN1pec 5
Frankia_alni_ACN14a 3
Thermobifida_fusca_YX 2
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 4
Thermomonospora_curvata_DSM_43183 4
Streptosporangium_roseum_DSM_43021 4
Kitasatospora_setae_KM-6054 6
Streptomyces_coelicolor_A3(2) 7
Streptomyces_sp._PAMC26508 5
Streptomyces_flavogriseus_ATCC_33331 5
Streptomyces_sp._SirexAA-E 5
Streptomyces_griseus_subsp._griseus_NBRC_13350 4
Streptomyces_bingchenggensis_BCW-1 8
Streptomyces_violaceusniger_Tu_4113 4
Streptomyces_avermitilis_MA-4680 5
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 8
Streptomyces_scabiei_87.22 11
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 7
Actinosynnema_mirum_DSM_43827 5
Saccharomonospora_viridis_DSM_43017 3
Pseudonocardia_dioxanivorans_CB1190 4
Saccharopolyspora_erythraea_NRRL_2338 4
Amycolatopsis_mediterranei_U32 6
Kribbella_flavida_DSM_17836 3
Nocardioides_sp._JS614 4
Propionibacterium_propionicum_F0230a 2
Propionibacterium_acnes_SK137 2
Microlunatus_phosphovorus_NM-1 1
Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1 2
Salinispora_arenicola_CNS-205 4
Salinispora_tropica_CNB-440 3
Verrucosispora_maris_AB-18-032 4
Micromonospora_sp._L5 4
Micromonospora_aurantiaca_ATCC_27029 4
Actinoplanes_sp._N902-109 2
Actinoplanes_sp._SE50/110 2
Actinoplanes_missouriensis_431 3
Segniliparus_rotundus_DSM_44985 5
Tsukamurella_paurometabola_DSM_20162 3
Gordonia_sp._KTR9 5
Gordonia_polyisoprenivorans_VH2 6
Gordonia_bronchialis_DSM_43247 4
Rhodococcus_jostii_RHA1 8
Rhodococcus_equi_103S 5
Rhodococcus_opacus_B4 8
Rhodococcus_erythropolis_PR4 6
Nocardia_cyriacigeorgica_GUH-2 5
Nocardia_farcinica_IFM_10152 4
Amycolicicoccus_subflavus_DQS3-9A1 10
Mycobacterium_massiliense_str._GO_06 10
Mycobacterium_abscessus_ATCC_19977 11
Mycobacterium_sp._JLS 8
Mycobacterium_intracellulare_ATCC_13950 7
Mycobacterium_avium_104 6
Mycobacterium_vanbaalenii_PYR-1 9
Mycobacterium_canettii_CIPT_140010059 12
Mycobacterium_africanum_GM041182 11
Mycobacterium_tuberculosis_KZN_1435 12
Mycobacterium_tuberculosis 13
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 12
Mycobacterium_rhodesiae_NBB3 3
Mycobacterium_ulcerans_Agy99 11
Mycobacterium_gilvum_PYR-GCK 7
Mycobacterium_chubuense_NBB4 10
Mycobacterium_marinum_M 13
Mycobacterium_smegmatis_str._MC2_155 7
Mycobacterium_leprae_Br4923 6
Corynebacterium_resistens_DSM_45100 2
Corynebacterium_aurimucosum_ATCC_700975 2
Corynebacterium_kroppenstedtii_DSM_44385 3
Corynebacterium_efficiens_YS-314 2
Corynebacterium_ulcerans_0102 2
Corynebacterium_urealyticum_DSM_7109 2
Corynebacterium_jeikeium_K411 2
Corynebacterium_variabile_DSM_44702 3
Corynebacterium_pseudotuberculosis_316 2
Corynebacterium_glutamicum_R 2
Corynebacterium_diphtheriae_NCTC_13129 2
Sanguibacter_keddieii_DSM_10542 2
Kytococcus_sedentarius_DSM_20547 2
Beutenbergia_cavernae_DSM_12333 2
Leifsonia_xyli_subsp._xyli_str._CTCB07 1
Microbacterium_testaceum_StLB037 2
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 1
Jonesia_denitrificans_DSM_20603 2
Intrasporangium_calvum_DSM_43043 3
Brachybacterium_faecium_DSM_4810 1
Isoptericola_variabilis_225 2
Xylanimonas_cellulosilytica_DSM_15894 3
Cellulomonas_flavigena_DSM_20109 4
Cellulomonas_fimi_ATCC_484 2
[Cellvibrio]_gilvus_ATCC_13127 2
Arthrobacter_phenanthrenivorans_Sphe3 2
Arthrobacter_chlorophenolicus_A6 2
Arthrobacter_aurescens_TC1 2
Arthrobacter_arilaitensis_Re117 3
Kocuria_rhizophila_DC2201 2
Rothia_mucilaginosa_DY-18 1
Rothia_dentocariosa_ATCC_17931 1
Arthrobacter_sp._Rue61a 2
Arthrobacter_sp._FB24 4
Renibacterium_salmoninarum_ATCC_33209 3
Micrococcus_luteus_NCTC_2665 2
Gardnerella_vaginalis_409-05 3
Bifidobacterium_longum_subsp._longum_JDM301 4
Bifidobacterium_animalis_subsp._lactis_Bl-04 4
Bifidobacterium_dentium_Bd1 4
Bifidobacterium_breve_ACS-071-V-Sch8b 4
Bifidobacterium_bifidum_S17 5
Bifidobacterium_adolescentis_ATCC_15703 4
Arcanobacterium_haemolyticum_DSM_20595 2
Mobiluncus_curtisii_ATCC_43063 2
Actinomyces_sp._F0330 2
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 2
Dehalococcoides_ethenogenes_195 1
Dehalococcoides_sp._BAV1 1
Dehalogenimonas_lykanthroporepellens_BL-DC-9 1
Thermomicrobium_roseum_DSM_5159 1
Sphaerobacter_thermophilus_DSM_20745 1
Herpetosiphon_aurantiacus_DSM_785 1
Roseiflexus_sp._RS-1 1
Roseiflexus_castenholzii_DSM_13941 1
Chloroflexus_sp._MS-G 1
Chloroflexus_sp._Y-400-fl 1
Chloroflexus_aggregans_DSM_9485 1
Chloroflexus_aurantiacus_J-10-fl 1
Truepera_radiovictrix_DSM_17093 3
Deinococcus_deserti_VCD115 1
Oceanithermus_profundus_DSM_14977 2
Marinithermus_hydrothermalis_DSM_14884 1
Meiothermus_silvanus_DSM_9946 2
Meiothermus_ruber_DSM_1279 2
Thermus_sp._CCB_US3_UF1 2
Thermus_scotoductus_SA-01 2
Thermus_thermophilus_HB27 2
Symbiobacterium_thermophilum_IAM_14863 1
Clostridiales_genomosp._BVAB3_str._UPII9-5 3
Clostridium_clariflavum_DSM_19732 1
Clostridium_cellulolyticum_H10 1
Ethanoligenens_harbinense_YUAN-3 0
Ruminococcus_albus_7 0
Sulfobacillus_acidophilus_DSM_10332 1
Desulfosporosinus_acidiphilus_SJ4 1
Desulfosporosinus_orientis_DSM_765 2
Desulfotomaculum_acetoxidans_DSM_771 0
Acetobacterium_woodii_DSM_1030 0
[Ruminococcus]_torques 0
Butyrivibrio_proteoclasticus_B316 0
Clostridium_sp._BNL1100 1
Clostridium_kluyveri_DSM_555 0
Clostridium_beijerinckii_NCIMB_8052 0
Clostridium_cellulovorans_743B 0
Ammonifex_degensii_KC4 1
Brevibacillus_brevis_NBRC_100599 0
Paenibacillus_terrae_HPL-003 0
Paenibacillus_mucilaginosus_3016 0
Paenibacillus_polymyxa_M1 0
Bacillus_sp._JS 0
Bacillus_amyloliquefaciens_FZB42 0
Bacillus_atrophaeus_1942 0
Bacillus_subtilis_subsp._subtilis_str._168 0
Bacillus_megaterium_DSM_319 1
Gemmatimonas_aurantiaca_T-27 1
Melioribacter_roseus_P3M 2
Ignavibacterium_album_JCM_16511 1
Pelodictyon_phaeoclathratiforme_BU-1 1
Chlorobium_luteolum_DSM_273 1
Chlorobium_chlorochromatii_CaD3 1
Chlorobium_phaeobacteroides_DSM_266 1
Chlorobium_phaeovibrioides_DSM_265 1
Chlorobium_limicola_DSM_245 1
Chlorobaculum_parvum_NCIB_8327 1
Chlorobium_tepidum_TLS 1
Chloroherpeton_thalassium_ATCC_35110 2
Prosthecochloris_aestuarii_DSM_271 1
Haliscomenobacter_hydrossis_DSM_1100 2
Saprospira_grandis_str._Lewin 1
Niastella_koreensis_GR20-10 1
Chitinophaga_pinensis_DSM_2588 1
Salinibacter_ruber_M8 2
Rhodothermus_marinus_DSM_4252 2
Belliella_baltica_DSM_15883 1
Marivirga_tractuosa_DSM_4126 1
Cytophaga_hutchinsonii_ATCC_33406 1
Runella_slithyformis_DSM_19594 1
Parabacteroides_distasonis_ATCC_8503 2
Tannerella_forsythia_ATCC_43037 1
Paludibacter_propionicigenes_WB4 4
Odoribacter_splanchnicus_DSM_20712 1
Bacteroides_sp._CF50 3
Prevotella_melaninogenica_ATCC_25845 1
Prevotella_intermedia_17 1
Prevotella_denticola_F0289 1
Prevotella_ruminicola_23 1
Porphyromonas_asaccharolytica_DSM_20707 1
Porphyromonas_gingivalis_ATCC_33277 1
Alistipes_finegoldii_DSM_17242 2
Bacteroides_salanitronis_DSM_18170 1
Bacteroides_helcogenes_P_36-108 1
Bacteroides_vulgatus_ATCC_8482 1
Bacteroides_thetaiotaomicron_VPI-5482 1
Bacteroides_fragilis_YCH46 1
Pedobacter_saltans_DSM_12145 2
Solitalea_canadensis_DSM_3403 4
Pedobacter_heparinus_DSM_2366 2
Sphingobacterium_sp._21 2
Fluviicola_taffensis_DSM_16823 1
Zunongwangia_profunda_SM-A87 1
Krokinobacter_sp._4H-3-7-5 2
Gramella_forsetii_KT0803 1
Lacinutrix_sp._5H-3-7-4 1
Maribacter_sp._HTCC2170 2
Robiginitalea_biformata_HTCC2501 1
Croceibacter_atlanticus_HTCC2559 1
Aequorivita_sublithincola_DSM_14238 1
Zobellia_galactanivorans 1
Muricauda_ruestringensis_DSM_13258 1
Cellulophaga_algicola_DSM_14237 1
Cellulophaga_lytica_DSM_7489 1
Flavobacteriaceae_bacterium_3519-10 2
Polaribacter_sp._MED152 2
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 2
Ornithobacterium_rhinotracheale_DSM_15997 2
Capnocytophaga_canimorsus_Cc5 2
Capnocytophaga_ochracea_DSM_7271 2
Weeksella_virosa_DSM_16922 1
Flavobacterium_indicum_GPTSA100-9 1
Flavobacterium_psychrophilum_JIP02/86 1
Flavobacterium_branchiophilum_FL-15 1
Flavobacterium_columnare_ATCC_49512 1
Flavobacterium_johnsoniae_UW101 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 1
Waddlia_chondrophila_WSU_86-1044 2
Parachlamydia_acanthamoebae_UV-7 1
Isosphaera_pallida_ATCC_43644 1
Planctomyces_brasiliensis_DSM_5305 0
Rhodopirellula_baltica_SH_1 0
Pirellula_staleyi_DSM_6068 0
Opitutus_terrae_PB90-1 1
Turneriella_parva_DSM_21527 7
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 2
Leptospira_interrogans_serovar_Lai_str._IPAV 4
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 6
Brachyspira_murdochii_DSM_12563 1
Brachyspira_intermedia_PWS/A 1
Brachyspira_pilosicoli_95/1000 1
Brachyspira_hyodysenteriae_WA1 1
Borrelia_garinii_PBi 2
Borrelia_bissettii_DN127 2
Borrelia_afzelii_PKo 2
Borrelia_burgdorferi_B31 2
Borrelia_recurrentis_A1 2
Borrelia_duttonii_Ly 2
Borrelia_crocidurae_str._Achema 2
Borrelia_turicatae_91E135 2
Borrelia_hermsii_DAH 2
Spirochaeta_smaragdinae_DSM_11293 2
Sphaerochaeta_pleomorpha_str._Grapes 2
Sphaerochaeta_globus_str._Buddy 2
Sphaerochaeta_coccoides_DSM_17374 1
Spirochaeta_caldaria_DSM_7334 3
Treponema_azotonutricium_ZAS-9 1
Treponema_primitia_ZAS-2 1
Treponema_brennaborense_DSM_12168 3
Treponema_paraluiscuniculi_Cuniculi_A 1
Treponema_succinifaciens_DSM_2489 1
Treponema_pallidum_subsp._pallidum_SS14 2
Treponema_denticola_ATCC_35405 1
Spirochaeta_africana_DSM_8902 1
Spirochaeta_thermophila_DSM_6192 3
Desulfurispirillum_indicum_S5 1
Calditerrivibrio_nitroreducens_DSM_19672 2
Denitrovibrio_acetiphilus_DSM_12809 1
Deferribacter_desulfuricans_SSM1 2
Flexistipes_sinusarabici_DSM_4947 3
Candidatus_Chloracidobacterium_thermophilum_B 1
Candidatus_Solibacter_usitatus_Ellin6076 1
Granulicella_tundricola_MP5ACTX9 1
Granulicella_mallensis_MP5ACTX8 1
Candidatus_Koribacter_versatilis_Ellin345 1
Terriglobus_saanensis_SP1PR4 1
Terriglobus_roseus_DSM_18391 1
Acidobacterium_capsulatum_ATCC_51196 1
Candidatus_Nitrospira_defluvii 0
Candidatus_Methylomirabilis_oxyfera 1
Acidithiobacillus_caldus_SM-1 1
Bacteriovorax_marinus_SJ 1
Bdellovibrio_bacteriovorus_HD100 1
Sulfurospirillum_deleyianum_DSM_6946 1
Sulfurospirillum_barnesii_SES-3 1
Arcobacter_sp._L 1
Arcobacter_nitrofigilis_DSM_7299 1
Desulfarculus_baarsii_DSM_2075 3
Desulfobacca_acetoxidans_DSM_11109 0
Desulfomonile_tiedjei_DSM_6799 4
Desulfurivibrio_alkaliphilus_AHT2 0
Desulfotalea_psychrophila_LSv54 1
Desulfobulbus_propionicus_DSM_2032 1
Desulfatibacillum_alkenivorans_AK-01 9
Desulfobacterium_autotrophicum_HRM2 3
Desulfococcus_oleovorans_Hxd3 5
Desulfohalobium_retbaense_DSM_5692 1
Desulfomicrobium_baculatum_DSM_4028 2
Desulfovibrio_piezophilus 0
Desulfovibrio_aespoeensis_Aspo-2 1
Desulfovibrio_magneticus_RS-1 1
Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 0
Desulfovibrio_africanus_str._Walvis_Bay 0
Geobacter_sp._M21 1
Geobacter_uraniireducens_Rf4 1
Geobacter_bemidjiensis_Bem 1
Pelobacter_propionicus_DSM_2379 1
Haliangium_ochraceum_DSM_14365 5
Sorangium_cellulosum_'So_ce_56' 5
Anaeromyxobacter_sp._Fw109-5 4
Anaeromyxobacter_dehalogenans_2CP-1 3
Stigmatella_aurantiaca_DW4/3-1 7
Corallococcus_coralloides_DSM_2259 7
Myxococcus_xanthus_DK_1622 5
Myxococcus_fulvus_HW-1 5
Dechloromonas_aromatica_RCB 2
Thauera_sp._MZ1T 4
Azoarcus_sp._KH32C 3
Azoarcus_sp._BH72 3
Dechlorosoma_suillum_PS 1
Laribacter_hongkongensis_HLHK9 2
Chromobacterium_violaceum_ATCC_12472 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 1
Thiomonas_arsenitoxydans 1
Thiomonas_intermedia_K12 1
Rubrivivax_gelatinosus_IL144 3
Leptothrix_cholodnii_SP-6 2
Burkholderia_phytofirmans_PsJN 1
Burkholderia_phymatum_STM815 2
Ralstonia_eutropha_JMP134 1
Cupriavidus_taiwanensis_LMG_19424 1
Cupriavidus_metallidurans_CH34 3
Cupriavidus_necator_N-1 2
Ralstonia_eutropha_H16 3
Ralstonia_pickettii_12D 0
Ralstonia_solanacearum_CFBP2957 1
Burkholderia_sp._CCGE1002 2
Burkholderia_thailandensis_E264 3
Burkholderia_pseudomallei_1106a 7
Burkholderia_mallei_SAVP1 3
Burkholderia_ambifaria_AMMD 2
Burkholderia_cenocepacia_HI2424 3
Burkholderia_multivorans_ATCC_17616 1
Burkholderia_vietnamiensis_G4 3
Burkholderia_gladioli_BSR3 4
Burkholderia_glumae_BGR1 1
Verminephrobacter_eiseniae_EF01-2 3
Alicycliphilus_denitrificans_K601 4
Ramlibacter_tataouinensis_TTB310 2
Delftia_sp._Cs1-4 5
Delftia_acidovorans_SPH-1 4
Polaromonas_sp._JS666 5
Polaromonas_naphthalenivorans_CJ2 2
Variovorax_paradoxus_S110 4
Rhodoferax_ferrireducens_T118 3
Acidovorax_ebreus_TPSY 2
Acidovorax_sp._KKS102 5
Acidovorax_sp._JS42 3
Acidovorax_citrulli_AAC00-1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1
Comamonas_testosteroni_CNB-2 2
Collimonas_fungivorans_Ter331 2
Herbaspirillum_seropedicae_SmR1 2
Pusillimonas_sp._T7-7 2
Advenella_kashmirensis_WT001 1
Bordetella_petrii_DSM_12804 2
Bordetella_avium_197N 1
Bordetella_pertussis_Tohama_I 1
Bordetella_parapertussis_12822 3
Bordetella_bronchiseptica_RB50 3
Achromobacter_xylosoxidans_A8 3
Achromobacter_xylosoxidans 3
Thiobacillus_denitrificans_ATCC_25259 1
Nitrosospira_multiformis_ATCC_25196 3
Nitrosomonas_sp._Is79A3 2
Nitrosomonas_eutropha_C91 2
Nitrosomonas_europaea_ATCC_19718 3
Sideroxydans_lithotrophicus_ES-1 1
Gallionella_capsiferriformans_ES-2 1
Caulobacter_sp._K31 2
Caulobacter_crescentus_NA1000 1
Erythrobacter_litoralis_HTCC2594 1
Sphingopyxis_alaskensis_RB2256 1
Novosphingobium_sp._PP1Y 1
Novosphingobium_aromaticivorans_DSM_12444 1
Sphingobium_sp._SYK-6 1
Sphingobium_japonicum_UT26S 2
Sphingobium_chlorophenolicum_L-1 3
Sphingomonas_sp._MM-1 2
Sphingomonas_wittichii_RW1 2
Hyphomonas_neptunium_ATCC_15444 1
Dinoroseobacter_shibae_DFL_12 1
Phaeobacter_gallaeciensis_2.10 2
Pseudovibrio_sp._FO-BEG1 2
Jannaschia_sp._CCS1 1
Ruegeria_sp._TM1040 2
Ruegeria_pomeroyi_DSS-3 3
Ketogulonicigenium_vulgare_Y25 1
Ketogulonigenium_vulgarum_WSH-001 1
Roseobacter_litoralis_Och_149 1
Roseobacter_denitrificans_OCh_114 1
Rhodobacter_sphaeroides_ATCC_17029 1
Rhodobacter_capsulatus_SB_1003 2
Paracoccus_denitrificans_PD1222 1
Rhodospirillum_photometricum_DSM_122 2
Tistrella_mobilis_KA081020-065 8
Magnetospirillum_magneticum_AMB-1 1
Rhodospirillum_centenum_SW 2
Rhodospirillum_rubrum_F11 2
Azospirillum_lipoferum_4B 1
Azospirillum_sp._B510 1
Azospirillum_brasilense_Sp245 2
Acetobacter_pasteurianus_IFO_3283-01 1
Polymorphum_gilvum_SL003B-26A1 3
Xanthobacter_autotrophicus_Py2 2
Azorhizobium_caulinodans_ORS_571 2
Methylobacterium_extorquens_AM1 1
Methylobacterium_sp._4-46 3
Methylobacterium_nodulans_ORS_2060 1
Sinorhizobium_medicae_WSM419 1
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 0
Agrobacterium_tumefaciens_str._C58 1
Agrobacterium_radiobacter_K84 0
Agrobacterium_sp._H13-3 0
Agrobacterium_vitis_S4 0
Mesorhizobium_sp._BNC1 1
Mesorhizobium_opportunistum_WSM2075 0
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 0
Mesorhizobium_loti_MAFF303099 0
Pelagibacterium_halotolerans_B2 1
Rhodomicrobium_vannielii_ATCC_17100 1
Rhodopseudomonas_palustris_BisA53 1
Bradyrhizobium_japonicum_USDA_110 5
Bradyrhizobium_sp._ORS_278 3
Saccharophagus_degradans_2-40 1
Teredinibacter_turnerae_T7901 1
Cellvibrio_japonicus_Ueda107 0
Aggregatibacter_aphrophilus_NJ8700 1
Aggregatibacter_actinomycetemcomitans_D7S-1 1
Gallibacterium_anatis_UMN179 1
Pasteurella_multocida_subsp._multocida_str._3480 1
Haemophilus_parasuis_SH0165 1
Haemophilus_parainfluenzae_T3T1 1
Haemophilus_influenzae_PittEE 1
Actinobacillus_pleuropneumoniae_serovar_5b_str._L20 1
Oceanimonas_sp._GK1 0
Aeromonas_veronii_B565 1
Aeromonas_salmonicida_subsp._salmonicida_A449 1
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1
Aliivibrio_salmonicida_LFI1238 1
Vibrio_fischeri_MJ11 1
Vibrio_sp._Ex25 2
Vibrio_harveyi_ATCC_BAA-1116 1
Vibrio_parahaemolyticus_RIMD_2210633 2
Vibrio_splendidus_LGP32 1
Vibrio_anguillarum_775 1
Vibrio_furnissii_NCTC_11218 1
Vibrio_vulnificus_MO6-24/O 1
Vibrio_cholerae_O395 1
Photobacterium_profundum_SS9 1
Psychromonas_ingrahamii_37 1
Psychromonas_sp._CNPT3 1
Ferrimonas_balearica_DSM_9799 2
Shewanella_piezotolerans_WP3 2
Shewanella_loihica_PV-4 2
Shewanella_halifaxensis_HAW-EB4 1
Shewanella_sediminis_HAW-EB3 2
Shewanella_denitrificans_OS217 1
Shewanella_pealeana_ATCC_700345 1
Shewanella_oneidensis_MR-1 1
Shewanella_baltica_OS185 1
Shewanella_woodyi_ATCC_51908 1
Shewanella_sp._MR-4 1
Shewanella_amazonensis_SB2B 1
Shewanella_violacea_DSS12 1
Shewanella_frigidimarina_NCIMB_400 2
Shewanella_putrefaciens_CN-32 1
Colwellia_psychrerythraea_34H 2
Pseudoalteromonas_haloplanktis_TAC125 1
Glaciecola_nitratireducens_FR1064 2
Marinobacter_adhaerens_HP15 1
Hahella_chejuensis_KCTC_2396 0
Marinomonas_sp._MWYL1 1
Marinomonas_mediterranea_MMB-1 1
Chromohalobacter_salexigens_DSM_3043 1
Methylomicrobium_alcaliphilum 0
Methylomonas_methanica_MC09 0
Xanthomonas_albilineans_GPE_PC73 0
Spiribacter_sp._UAH-SP71 0
Alkalilimnicola_ehrlichii_MLHE-1 1
Thioalkalivibrio_sulfidophilus_HL-EbGr7 1
Thioalkalivibrio_sp._K90mix 1
Halorhodospira_halophila_SL1 0
Allochromatium_vinosum_DSM_180 1
Thiocystis_violascens_DSM_198 3
Nitrosococcus_watsonii_C-113 1
Nitrosococcus_halophilus_Nc4 1
Nitrosococcus_oceani_ATCC_19707 1
Legionella_longbeachae_NSW150 1
Legionella_pneumophila_str._Corby 1
gamma_proteobacterium_HdN1 1
Photorhabdus_asymbiotica 1
Photorhabdus_luminescens_subsp._laumondii_TTO1 1
Xenorhabdus_bovienii_SS-2004 1
Xenorhabdus_nematophila_ATCC_19061 1
Providencia_stuartii_MRSN_2154 1
Proteus_mirabilis_HI4320 1
Edwardsiella_ictaluri_93-146 1
Edwardsiella_tarda_EIB202 1
Rahnella_sp._Y9602 1
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 1
Yersinia_pseudotuberculosis_IP_31758 1
Yersinia_pestis_Pestoides_F 1
Yersinia_enterocolitica_subsp._enterocolitica_8081 1
Serratia_sp._AS12 2
Serratia_sp._ATCC_39006 1
Serratia_plymuthica_AS9 2
Serratia_proteamaculans_568 1
Dickeya_dadantii_Ech703 1
Dickeya_zeae_Ech1591 1
Pectobacterium_wasabiae_WPP163 1
Pectobacterium_sp._SCC3193 1
Pectobacterium_atrosepticum_SCRI1043 1
Pectobacterium_carotovorum_subsp._carotovorum_PC1 1
Escherichia_blattae_DSM_4481 1
Klebsiella_oxytoca_E718 0
Klebsiella_pneumoniae_NTUH-K2044 0
Citrobacter_koseri_ATCC_BAA-895 0
Azotobacter_vinelandii_DJ 2
Pseudomonas_sp._TKP 1
Pseudomonas_sp._UW4 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1
Pseudomonas_entomophila_L48 1
Pseudomonas_syringae_pv._tomato_str._DC3000 1
Pseudomonas_stutzeri_A1501 1
Pseudomonas_fulva_12-X 1
Pseudomonas_putida_F1 1
Pseudomonas_protegens_Pf-5 2
Pseudomonas_fluorescens_SBW25 1
Pseudomonas_mendocina_ymp 1
Pseudomonas_aeruginosa_UCBPP-PA14 1
Acinetobacter_oleivorans_DR1 2
Acinetobacter_calcoaceticus_PHEA-2 3
Acinetobacter_baumannii_ATCC_17978 3
Acinetobacter_sp._ADP1 1
Methylophaga_sp._JAM1 1
Francisella_noatunensis_subsp._orientalis_str._Toba_04 0
Pyrolobus_fumarii_1A 1
Aeropyrum_pernix_K1 1
Pyrobaculum_sp._1860 2
Pyrobaculum_calidifontis_JCM_11548 1
Pyrobaculum_arsenaticum_DSM_13514 1
Pyrobaculum_oguniense_TE7 1
Pyrobaculum_aerophilum_str._IM2 1
halophilic_archaeon_DL31 2
Archaeoglobus_veneficus_SNP6 1
Archaeoglobus_fulgidus_DSM_4304 1
Salinarchaeum_sp._Harcht-Bsk1 2
Halopiger_xanaduensis_SH-6 1
Haloterrigena_turkmenica_DSM_5511 2
Natrinema_sp._J7-2 1
Natrialba_magadii_ATCC_43099 2
Halorubrum_lacusprofundi_ATCC_49239 2
Halogeometricum_borinquense_DSM_11551 2
Haloferax_mediterranei_ATCC_33500 2
Haloferax_volcanii_DS2 2
Halomicrobium_mukohataei_DSM_12286 1
Halorhabdus_utahensis_DSM_12940 1
Natronomonas_pharaonis_DSM_2160 1
Haloarcula_hispanica_ATCC_33960 1
Haloarcula_marismortui_ATCC_43049 1
Halalkalicoccus_jeotgali_B3 1
Halobacterium_salinarum_R1 1
Halobacterium_sp._NRC-1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   5
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   8
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   3
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   6
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   4
Cryptococcus_neoformans_var._grubii_H99_ 1
Cryptococcus_neoformans_B-3501A_ 1
Cryptococcus_neoformans_JEC21_ 1
Paracoccidioides_brasiliensis_Pb01_ 8
Paracoccidioides_brasiliensis_Pb03_ 8
Coccidioides_posadasii_str._Silveira_ 7
Coccidioides_immitis_RMSCC_3703_ 5
Coccidioides_immitis_RMSCC_2394_ 6
Coccidioides_immitis_H538.4_ 7
Ajellomyces_dermatitidis_ER-3_ 7
Histoplasma_capsulatum_H143 6
Histoplasma_capsulatum_H88 6
Histoplasma_capsulatum_G186AR 7
Aspergillus_fumigatus_A1163_ 7
Candida_albicans_WO-1_ 2
Saccharomyces_cerevisiae_UC5 4
Saccharomyces_cerevisiae_PW5 4
Saccharomyces_cerevisiae_FL100 2
Saccharomyces_cerevisiae_CLIB324 2
Saccharomyces_cerevisiae_CBS7960 3
Saccharomyces_cerevisiae_YJM269 3
Saccharomyces_cerevisiae_T7 4
Saccharomyces_cerevisiae_FostersB 2
Saccharomyces_cerevisiae_FostersO 0
Saccharomyces_cerevisiae_VL3 5
Saccharomyces_cerevisiae_Vin13 5
Saccharomyces_cerevisiae_LalvinQA23 5
Saccharomyces_cerevisiae_AWRI796 3
Saccharomyces_cerevisiae_Sigma1278b 4
Saccharomyces_cerevisiae_W303 4
Saccharomyces_cerevisiae_JAY291 4
Saccharomyces_cerevisiae_AWRI1631 4
Saccharomyces_cerevisiae_YPS163 2
Saccharomyces_cerevisiae_M22 1
Saccharomyces_cerevisiae_T73 2
Saccharomyces_cerevisiae_CLIB215 3
Saccharomyces_cerevisiae_YJM789_ 4
Saccharomyces_cerevisiae_YJM789 4
Saccharomyces_cerevisiae_RM11-1a 4
Saccharomyces_cerevisiae_RM11-1a_ 4
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   4
Schizosaccharomyces_pombe_972h-_ 2
Batrachochytrium_dendrobatidis_JEL423_ 6
Batrachochytrium_dendrobatidis_JAM81_ 6
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   7
Hordeum_vulgare_22   (Domesticated barley)   15
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   8
Trypanosoma_brucei_Lister_427_v4.1 2
Neospora_caninum_Nc-Liverpool_6.2 2
Plasmodium_falciparum_HB3_ 1
Plasmodium_falciparum_Dd2_ 2
Chroococcidiopsis_thermalis_PCC_7203 2
Chamaesiphon_minutus_PCC_6605 1
Synechocystis_sp._PCC_6803_substr._PCC-P 1
Synechocystis_sp._PCC_6803_substr._PCC-N 1
Synechocystis_sp._PCC_6803_substr._GT-I 1
Synechocystis_sp._PCC_6803 1
Cyanobium_gracile_PCC_6307 1
Dactylococcopsis_salina_PCC_8305 1
Synechococcus_sp._JA-2-3B'a(2-13) 1
Synechococcus_sp._JA-3-3Ab 1
Synechococcus_sp._CC9902 1
Synechococcus_sp._RCC307 1
Synechococcus_sp._CC9605 1
Synechococcus_sp._WH_8102 1
Synechococcus_sp._WH_7803 1
Synechococcus_sp._PCC_7002 2
Synechococcus_elongatus_PCC_6301 1
Prochlorococcus_marinus_str._NATL1A 1
Prochlorococcus_marinus_str._MIT_9301 1
Prochlorococcus_marinus_str._AS9601 1
Prochlorococcus_marinus_subsp._marinus_str._CCMP1375 1
Prochlorococcus_marinus_subsp._pastoris_str._CCMP1986 1
Prochlorococcus_marinus_str._MIT_9215 1
Prochlorococcus_marinus_str._MIT_9211 1
Prochlorococcus_marinus_str._MIT_9313 1
Prochlorococcus_marinus_str._MIT_9312 1
Prochlorococcus_marinus_str._MIT_9303 1
Prochlorococcus_marinus_str._NATL2A 1
Crinalium_epipsammum_PCC_9333 1
Oscillatoria_nigro-viridis_PCC_7112 1
Oscillatoria_acuminata_PCC_6304 1
Arthrospira_platensis_NIES-39 3
Cyanothece_sp._PCC_7822 2
Cyanothece_sp._PCC_7425 2
Cyanothece_sp._PCC_7424 2
Cyanothece_sp._ATCC_51142 6
Cyanothece_sp._PCC_8801 2
Cyanobacterium_aponinum_PCC_10605 1
Cyanobacterium_stanieri_PCC_7202 3
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 7
Stanieria_cyanosphaera_PCC_7437 5
Calothrix_parietina_Calothrix_sp._PCC_6303 2
Cylindrospermum_stagnale_PCC_7417 3
Anabaena_cylindrica_PCC_7122 2
Frankia_sp._EuI1c 3
Frankia_sp._CcI3 4
Nocardiopsis_alba_ATCC_BAA-2165 4
Streptomyces_albus_J1074 5
Streptomyces_rapamycinicus_NRRL_5491 7
Streptomyces_davawensis_JCM_4913 11
Streptomyces_fulvissimus_DSM_40593 4
Streptomyces_venezuelae_ATCC_10712 5
Streptomyces_collinus_Tu_365 8
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 8
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 7
Saccharothrix_espanaensis_DSM_44229 3
Amycolatopsis_mediterranei_RB 6
Amycolatopsis_mediterranei_S699 6
Amycolatopsis_mediterranei_S699 6
Amycolatopsis_orientalis_HCCB10007 6
Propionibacterium_avidum_44067 2
Propionibacterium_acnes_ATCC_11828 2
Propionibacterium_acnes_TypeIA2_P.acn31 2
Propionibacterium_acnes_TypeIA2_P.acn17 2
Propionibacterium_acnes_TypeIA2_P.acn33 2
Propionibacterium_acnes_C1 2
Propionibacterium_acnes_HL096PA1 2
Propionibacterium_acnes_6609 2
Propionibacterium_acnes_266 2
Propionibacterium_acnes_KPA171202 2
Propionibacterium_acidipropionici_ATCC_4875 3
Actinoplanes_friuliensis_DSM_7358 4
Rhodococcus_pyridinivorans_SB3094 5
Rhodococcus_erythropolis_CCM2595 5
Nocardia_brasiliensis_ATCC_700358 12
Mycobacterium_sp._MOTT36Y 7
Mycobacterium_sp._JDM601 11
Mycobacterium_abscessus_subsp._bolletii_50594 8
Mycobacterium_liflandii_128FXT 10
Mycobacterium_sp._KMS 8
Mycobacterium_sp._MCS 8
Mycobacterium_yongonense_05-1390 7
Mycobacterium_intracellulare_MOTT-64 7
Mycobacterium_indicus_pranii_MTCC_9506 7
Mycobacterium_intracellulare_MOTT-02 7
Mycobacterium_avium_subsp._paratuberculosis_MAP4 8
Mycobacterium_avium_subsp._paratuberculosis_K-10 9
Mycobacterium_canettii_CIPT_140070017 12
Mycobacterium_canettii_CIPT_140060008 12
Mycobacterium_canettii_CIPT_140070008 12
Mycobacterium_canettii_CIPT_140070010 12
Mycobacterium_tuberculosis_EAI5/NITR206 12
Mycobacterium_tuberculosis_EAI5 10
Mycobacterium_tuberculosis_CAS/NITR204 11
Mycobacterium_tuberculosis_str._Beijing/NITR203 12
Mycobacterium_tuberculosis_UT205 12
Mycobacterium_tuberculosis_RGTB423 8
Mycobacterium_tuberculosis_RGTB327 10
Mycobacterium_tuberculosis_CTRI-2 12
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 12
Mycobacterium_tuberculosis_KZN_605 12
Mycobacterium_tuberculosis_KZN_4207 12
Mycobacterium_tuberculosis_CCDC5180 12
Mycobacterium_tuberculosis_CCDC5079 12
Mycobacterium_tuberculosis_CCDC5079 12
Mycobacterium_tuberculosis_H37Ra 12
Mycobacterium_tuberculosis_str._Haarlem/NITR202 7
Mycobacterium_tuberculosis_str._Haarlem 12
Mycobacterium_tuberculosis_F11 12
Mycobacterium_tuberculosis_H37Rv 12
Mycobacterium_tuberculosis_CDC1551 12
Mycobacterium_bovis_AF2122/97 12
Mycobacterium_bovis_BCG_str._Korea_1168P 12
Mycobacterium_bovis_BCG_str._Mexico 11
Mycobacterium_bovis_BCG_str._Tokyo_172 12
Mycobacterium_gilvum_Spyr1 7
Mycobacterium_smegmatis_str._MC2_155 7
Mycobacterium_leprae_TN 6
Mycobacterium_kansasii_ATCC_12478 12
Corynebacterium_maris_DSM_45190 2
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 2
Corynebacterium_terpenotabidum_Y-11 4
Corynebacterium_ulcerans_BR-AD22 2
Corynebacterium_ulcerans_809 2
Corynebacterium_urealyticum_DSM_7111 2
Corynebacterium_argentoratense_DSM_44202 2
Corynebacterium_callunae_DSM_20147 2
Corynebacterium_pseudotuberculosis_258 2
Corynebacterium_pseudotuberculosis_Cp162 2
Corynebacterium_pseudotuberculosis_P54B96 2
Corynebacterium_pseudotuberculosis_267 2
Corynebacterium_pseudotuberculosis_1/06-A 2
Corynebacterium_pseudotuberculosis_42/02-A 2
Corynebacterium_pseudotuberculosis_3/99-5 2
Corynebacterium_pseudotuberculosis_31 2
Corynebacterium_pseudotuberculosis_CIP_52.97 1
Corynebacterium_pseudotuberculosis_PAT10 2
Corynebacterium_pseudotuberculosis_I19 2
Corynebacterium_pseudotuberculosis_FRC41 2
Corynebacterium_pseudotuberculosis_C231 2
Corynebacterium_pseudotuberculosis_1002 2
Corynebacterium_glutamicum_MB001 2
Corynebacterium_glutamicum_SCgG2 2
Corynebacterium_glutamicum_SCgG1 2
Corynebacterium_glutamicum_ATCC_13032 2
Corynebacterium_glutamicum_ATCC_13032 2
Corynebacterium_glutamicum_ATCC_13032 2
Corynebacterium_diphtheriae_BH8 2
Corynebacterium_diphtheriae_INCA_402 2
Corynebacterium_diphtheriae_VA01 2
Corynebacterium_diphtheriae_HC04 2
Corynebacterium_diphtheriae_HC03 2
Corynebacterium_diphtheriae_HC02 2
Corynebacterium_diphtheriae_HC01 2
Corynebacterium_diphtheriae_241 2
Corynebacterium_diphtheriae_CDCE_8392 1
Corynebacterium_diphtheriae_PW8 2
Corynebacterium_diphtheriae_C7_(beta) 2
Corynebacterium_diphtheriae_31A 2
Leifsonia_xyli_subsp._cynodontis_DSM_46306 1
Clavibacter_michiganensis_subsp._sepedonicus 1
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 1
Gardnerella_vaginalis_HMP9231 3
Gardnerella_vaginalis_ATCC_14019 3
Bifidobacterium_longum_NCC2705 3
Bifidobacterium_longum_DJO10A 4
Bifidobacterium_longum_subsp._infantis_157F 4
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 4
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 4
Bifidobacterium_longum_subsp._longum_KACC_91563 4
Bifidobacterium_longum_subsp._longum_BBMN68 4
Bifidobacterium_longum_subsp._longum_F8 3
Bifidobacterium_longum_subsp._longum_JCM_1217 4
Bifidobacterium_thermophilum_RBL67 3
Bifidobacterium_animalis_subsp._animalis_ATCC_25527 4
Bifidobacterium_animalis_subsp._lactis_Bl12 4
Bifidobacterium_animalis_subsp._lactis_B420 4
Bifidobacterium_animalis_subsp._lactis_ATCC_27673 4
Bifidobacterium_animalis_subsp._lactis_BLC1 4
Bifidobacterium_animalis_subsp._lactis_CNCM_I-2494 4
Bifidobacterium_animalis_subsp._lactis_Bi-07 4
Bifidobacterium_animalis_subsp._lactis_V9 4
Bifidobacterium_animalis_subsp._lactis_DSM_10140 3
Bifidobacterium_animalis_subsp._lactis_BB-12 4
Bifidobacterium_animalis_subsp._lactis_AD011 3
Bifidobacterium_breve_UCC2003 4
Bifidobacterium_asteroides_PRL2011 3
Bifidobacterium_bifidum_PRL2010 5
Bifidobacterium_bifidum_BGN4 5
Actinomyces_graevenitzii_C83_ 3
Actinomyces_odontolyticus_ATCC_17982 4
Actinomyces_viscosus_C505 2
Dehalococcoides_mccartyi_GY50 1
Dehalococcoides_mccartyi_DCMB5 1
Dehalococcoides_mccartyi_BTF08 1
Dehalococcoides_sp._GT 1
Dehalococcoides_sp._VS 1
Dehalococcoides_sp._CBDB1 1
Chthonomonas_calidirosea_T49 1
Thermus_oshimai_JL-2 2
Thermus_thermophilus_JL-18 2
Thermus_thermophilus_SG0.5JP17-16 1
Thermus_thermophilus_HB8 2
Sulfobacillus_acidophilus_TPY 1
Desulfosporosinus_meridiei_DSM_13257 2
Clostridium_sp._SY8519 0
Clostridium_saccharobutylicum_DSM_13864 0
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 0
Clostridium_kluyveri_NBRC_12016 0
Clostridium_pasteurianum_BC1 1
Streptococcus_anginosus_C238 0
Streptococcus_agalactiae_ILRI112 1
Streptococcus_agalactiae_ILRI005 1
Paenibacillus_mucilaginosus_KNP414 0
Paenibacillus_mucilaginosus_K02 0
Paenibacillus_polymyxa_SC2 0
Paenibacillus_polymyxa_E681 0
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 0
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 0
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 0
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 0
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5113 0
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 0
Bacillus_amyloliquefaciens_subsp._plantarum_CAU_B946 0
Bacillus_amyloliquefaciens_LFB112 0
Bacillus_amyloliquefaciens_CC178 0
Bacillus_amyloliquefaciens_Y2 0
Bacillus_amyloliquefaciens_IT-45 0
Bacillus_amyloliquefaciens_XH7 0
Bacillus_amyloliquefaciens_LL3 0
Bacillus_amyloliquefaciens_TA208 0
Bacillus_amyloliquefaciens_DSM_7 0
Bacillus_subtilis_PY79 0
Bacillus_subtilis_QB928 0
Bacillus_subtilis_BSn5 0
Bacillus_subtilis_subsp._subtilis_str._BAB-1 0
Bacillus_subtilis_subsp._subtilis_str._BSP1 0
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 0
Bacillus_subtilis_subsp._subtilis_6051-HGW 0
Bacillus_subtilis_subsp._spizizenii_TU-B-10 0
Bacillus_subtilis_subsp._spizizenii_str._W23 0
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 0
Bacillus_cereus_AH187 0
Bacillus_cereus_NC7401 0
Chlorobium_phaeobacteroides_BS1 1
Salinibacter_ruber_DSM_13855 2
Rhodothermus_marinus_SG0.5JP17-172 2
Emticicia_oligotrophica_DSM_17448 2
Prevotella_sp._oral_taxon_299_str._F0039 1
Prevotella_dentalis_DSM_3688 1
Porphyromonas_gingivalis_TDC60 1
Porphyromonas_gingivalis_W83 1
Alistipes_shahii_WAL_8301 1
Bacteroides_xylanisolvens_XB1A 1
Bacteroides_fragilis_638R 1
Bacteroides_fragilis_NCTC_9343 1
Nonlabens_dokdonensis_DSW-6 1
Psychroflexus_torquis_ATCC_700755 2
Riemerella_anatipestifer_RA-CH-2 2
Riemerella_anatipestifer_RA-CH-1 2
Riemerella_anatipestifer_RA-GD 2
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 2
Fibrobacter_succinogenes_subsp._succinogenes_S85 1
Singulisphaera_acidiphila_DSM_18658 0
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 2
Leptospira_interrogans_serovar_Lai_str._56601 4
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 4
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 6
Brachyspira_pilosicoli_WesB 1
Brachyspira_pilosicoli_B2904 1
Brachyspira_pilosicoli_P43/6/78 1
Borrelia_garinii_NMJW1 2
Borrelia_garinii_BgVir 2
Borrelia_afzelii_HLJ01 2
Borrelia_afzelii_PKo 2
Borrelia_burgdorferi_CA382 2
Borrelia_burgdorferi_JD1 2
Borrelia_burgdorferi_N40 2
Borrelia_burgdorferi_ZS7 2
Borrelia_miyamotoi_LB-2001 2
Treponema_pedis_str._T_A4 2
Treponema_pallidum_str._Fribourg-Blanc 1
Treponema_pallidum_subsp._pertenue_str._Gauthier 1
Treponema_pallidum_subsp._pertenue_str._CDC2 1
Treponema_pallidum_subsp._pertenue_str._SamoaD 1
Treponema_pallidum_subsp._pallidum_str._Mexico_A 1
Treponema_pallidum_subsp._pallidum_str._Chicago 1
Treponema_pallidum_subsp._pallidum_DAL-1 1
Treponema_pallidum_subsp._pallidum_str._Nichols 1
Spirochaeta_thermophila_DSM_6578 3
Leptospirillum_ferriphilum_ML-04 0
Bdellovibrio_exovorus_JSS 1
Bdellovibrio_bacteriovorus_str._Tiberius 1
Desulfobacula_toluolica_Tol2 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1
Desulfovibrio_desulfuricans_ND132 1
Geobacter_sp._M18 1
Sorangium_cellulosum_So0157-2 5
Anaeromyxobacter_sp._K 3
Anaeromyxobacter_dehalogenans_2CP-C 4
Myxococcus_stipitatus_DSM_14675 6
Burkholderia_phenoliruptrix_BR3459a 2
Pandoraea_pnomenusa_3kgm 3
Ralstonia_pickettii_12J 0
Ralstonia_solanacearum_FQY_4 1
Ralstonia_solanacearum_Po82 0
Ralstonia_solanacearum_PSI07 1
Ralstonia_solanacearum_CMR15 0
Ralstonia_solanacearum_GMI1000 1
Burkholderia_sp._YI23 1
Burkholderia_sp._CCGE1003 2
Burkholderia_sp._CCGE1001 3
Burkholderia_sp._KJ006 3
Burkholderia_thailandensis_MSMB121 3
Burkholderia_pseudomallei_MSHR305 7
Burkholderia_pseudomallei_NCTC_13179 7
Burkholderia_pseudomallei_BPC006 8
Burkholderia_pseudomallei_1026b 7
Burkholderia_pseudomallei_MSHR346 3
Burkholderia_pseudomallei_668 6
Burkholderia_pseudomallei_1710b 7
Burkholderia_pseudomallei_K96243 6
Burkholderia_mallei_NCTC_10229 5
Burkholderia_mallei_NCTC_10247 5
Burkholderia_mallei_ATCC_23344 5
Burkholderia_lata 2
Burkholderia_ambifaria_MC40-6 1
Burkholderia_cenocepacia_MC0-3 3
Burkholderia_cenocepacia_AU_1054 3
Burkholderia_cenocepacia_J2315 3
Burkholderia_multivorans_ATCC_17616 1
Alicycliphilus_denitrificans_BC 3
Variovorax_paradoxus_B4 5
Variovorax_paradoxus_EPS 4
Bordetella_pertussis_CS 1
Bordetella_parapertussis_Bpp5 2
Bordetella_bronchiseptica_MO149 3
Bordetella_bronchiseptica_253 3
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 3
Nitrosomonas_sp._AL212 2
Caulobacter_crescentus_CB15 1
Phaeobacter_gallaeciensis_DSM_17395 2
Phaeobacter_gallaeciensis_DSM_26640 2
Leisingera_methylohalidivorans_DSM_14336 1
Octadecabacter_antarcticus_307 2
Octadecabacter_arcticus_238 1
Rhodobacter_sphaeroides_KD131 1
Rhodobacter_sphaeroides_ATCC_17025 1
Rhodobacter_sphaeroides_2.4.1 1
Paracoccus_aminophilus_JCM_7686 1
Magnetospirillum_gryphiswaldense_MSR-1_v2 1
Rhodospirillum_rubrum_ATCC_11170 2
Gluconobacter_oxydans_H24 1
Acetobacter_pasteurianus_386B 1
Acetobacter_pasteurianus_IFO_3283-12 1
Acetobacter_pasteurianus_IFO_3283-01-42C 1
Acetobacter_pasteurianus_IFO_3283-32 1
Acetobacter_pasteurianus_IFO_3283-26 1
Acetobacter_pasteurianus_IFO_3283-22 1
Acetobacter_pasteurianus_IFO_3283-07 1
Acetobacter_pasteurianus_IFO_3283-03 1
Mesorhizobium_australicum_WSM2073 0
Rhodopseudomonas_palustris_DX-1 1
Rhodopseudomonas_palustris_TIE-1 1
Rhodopseudomonas_palustris_HaA2 1
Rhodopseudomonas_palustris_BisB5 3
Rhodopseudomonas_palustris_BisB18 1
Rhodopseudomonas_palustris_CGA009 1
Bradyrhizobium_sp._S23321 6
Bradyrhizobium_sp._BTAi1 3
Bradyrhizobium_oligotrophicum_S58 5
Bradyrhizobium_japonicum_USDA_6 5
Mannheimia_succiniciproducens_MBEL55E 1
Bibersteinia_trehalosi_USDA-ARS-USMARC-192 1
Aggregatibacter_actinomycetemcomitans_ANH9381 1
Aggregatibacter_actinomycetemcomitans_D11S-1 1
Mannheimia_haemolytica_USMARC_2286 1
Mannheimia_haemolytica_M42548 1
Mannheimia_haemolytica_D174 1
Mannheimia_haemolytica_D171 1
Mannheimia_haemolytica_D153 1
Mannheimia_haemolytica_USDA-ARS-USMARC-183 1
Mannheimia_haemolytica_USDA-ARS-USMARC-185 1
Pasteurella_multocida_36950 1
Pasteurella_multocida_subsp._multocida_str._HN06 1
Pasteurella_multocida_subsp._multocida_str._Pm70 1
Haemophilus_parasuis_ZJ0906 1
Haemophilus_influenzae_KR494 1
Haemophilus_influenzae_F3047 1
Haemophilus_influenzae_F3031 1
Haemophilus_influenzae_10810 1
Haemophilus_influenzae_PittGG 1
Haemophilus_influenzae_86-028NP 1
Haemophilus_influenzae_R2866 1
Haemophilus_influenzae_R2846 1
Haemophilus_influenzae_Rd_KW20 1
Actinobacillus_suis_H91-0380 1
Actinobacillus_pleuropneumoniae_serovar_3_str._JL03 1
Actinobacillus_pleuropneumoniae_serovar_7_str._AP76 1
Aeromonas_hydrophila_ML09-119 1
Vibrio_fischeri_ES114 1
Vibrio_sp._EJY3 2
Vibrio_parahaemolyticus_BB22OP 2
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 2
Vibrio_anguillarum_Listonella_anguillarum_M3 1
Vibrio_nigripulchritudo_VibrioScope 1
Vibrio_vulnificus_CMCP6 1
Vibrio_vulnificus_YJ016 1
Vibrio_cholerae_LMA3984-4 1
Vibrio_cholerae_M66-2 1
Vibrio_cholerae_O395 1
Vibrio_cholerae_IEC224 1
Vibrio_cholerae_O1_str._2010EL-1786 1
Vibrio_cholerae_MJ-1236 1
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 1
Shewanella_sp._W3-18-1 1
Shewanella_sp._ANA-3 1
Shewanella_baltica_BA175 2
Shewanella_baltica_OS678 2
Shewanella_baltica_OS117 1
Shewanella_baltica_OS223 1
Shewanella_baltica_OS195 2
Shewanella_baltica_OS155 1
Shewanella_sp._MR-7 1
Shewanella_putrefaciens_200 1
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 0
Alteromonas_macleodii_str._'Ionian_Sea_U8' 0
Alteromonas_macleodii_str._'Ionian_Sea_U7' 0
Alteromonas_macleodii_str._'Ionian_Sea_U4' 0
Alteromonas_macleodii_AltDE1 0
Alcanivorax_dieselolei_B5 1
Spiribacter_salinus_M19-40 0
Thioalkalivibrio_nitratireducens_DSM_14787 2
Thioflavicoccus_mobilis_8321 1
Legionella_pneumophila_str._Paris 1
Legionella_pneumophila_str._Lens 1
Legionella_pneumophila_subsp._pneumophila_LPE509 1
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 1
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 1
Legionella_pneumophila_subsp._pneumophila 1
Legionella_pneumophila_subsp._pneumophila 1
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 1
Legionella_pneumophila_2300/99_Alcoy 1
Proteus_mirabilis_BB2000 1
Morganella_morganii_subsp._morganii_KT 1
Edwardsiella_tarda_C07-087 1
Edwardsiella_tarda_FL6-60 1
Rahnella_aquatilis_HX2 1
Yersinia_pseudotuberculosis_PB1/+ 1
Yersinia_pseudotuberculosis_YPIII 1
Yersinia_pseudotuberculosis_IP_32953 1
Yersinia_pestis_biovar_Microtus_str._91001 1
Yersinia_pestis_A1122 1
Yersinia_pestis_Z176003 1
Yersinia_pestis_D182038 1
Yersinia_pestis_D106004 1
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 1
Yersinia_pestis_Nepal516 1
Yersinia_pestis_Antiqua 1
Yersinia_pestis_Angola 1
Yersinia_pestis_CO92 1
Yersinia_pestis_KIM10+ 1
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 1
Yersinia_enterocolitica_subsp._palearctica_Y11 1
Serratia_sp._AS13 2
Serratia_plymuthica_S13 2
Serratia_plymuthica_4Rx13 1
Serratia_marcescens_FGI94 1
Serratia_marcescens_WW4 2
Serratia_liquefaciens_ATCC_27592 2
Dickeya_dadantii_Ech586 1
Dickeya_dadantii_3937 1
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 1
Shigella_dysenteriae_1617 0
Klebsiella_oxytoca_KCTC_1686 0
Klebsiella_pneumoniae_subsp._pneumoniae_1084 0
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 0
Enterobacter_aerogenes_EA1509E 0
Escherichia_coli_E._coli_PMV-1 0
Escherichia_coli_JJ1886 0
Escherichia_coli_O7:K1_str._CE10 0
Escherichia_coli_O104:H4_str._2009EL-2050 0
Escherichia_coli_O104:H4_str._2009EL-2071 0
Escherichia_coli_O104:H4_str._2011C-3493 0
Escherichia_coli_NA114 0
Escherichia_coli_str._'clone_D_i2' 0
Escherichia_coli_str._'clone_D_i14' 0
Escherichia_coli_UM146 0
Escherichia_coli_042 0
Escherichia_coli_IHE3034 0
Escherichia_coli_ABU_83972 0
Escherichia_coli_ED1a 0
Escherichia_coli_IAI39 0
Escherichia_coli_UMN026 0
Escherichia_coli_55989 0
Escherichia_coli_S88 0
Escherichia_coli_SE15 0
Escherichia_coli_APEC_O1 0
Escherichia_coli_UTI89 0
Escherichia_coli_536 0
Escherichia_coli_ETEC_H10407 0
Escherichia_coli_O26:H11_str._11368 0
Escherichia_coli_CFT073 0
Azotobacter_vinelandii_CA6 2
Azotobacter_vinelandii_CA 2
Pseudomonas_denitrificans_ATCC_13867 1
Pseudomonas_syringae_pv._phaseolicola_1448A 1
Pseudomonas_syringae_pv._syringae_B728a 1
Pseudomonas_putida_H8234 2
Pseudomonas_putida_NBRC_14164 1
Pseudomonas_putida_DOT-T1E 0
Pseudomonas_putida_W619 1
Pseudomonas_putida_KT2440 1
Pseudomonas_protegens_CHA0 3
Pseudomonas_poae_RE*1-1-14 0
Pseudomonas_fluorescens_F113 1
Pseudomonas_fluorescens_A506 0
Pseudomonas_fluorescens_Pf0-1 0
Pseudomonas_resinovorans_NBRC_106553 2
Pseudomonas_mendocina_NK-01 0
Pseudomonas_aeruginosa_SCV20265 1
Pseudomonas_aeruginosa_MTB-1 1
Pseudomonas_aeruginosa_LES431 1
Pseudomonas_aeruginosa_RP73 1
Pseudomonas_aeruginosa_B136-33 1
Pseudomonas_aeruginosa_PA1R 1
Pseudomonas_aeruginosa_PA1 1
Pseudomonas_aeruginosa_DK2 1
Pseudomonas_aeruginosa_NCGM2.S1 1
Pseudomonas_aeruginosa_M18 1
Pseudomonas_aeruginosa_LESB58 1
Pseudomonas_aeruginosa_PA7 1
Pseudomonas_aeruginosa_PAO1 1
Acinetobacter_genomosp._13TU__RUH2624 2
Acinetobacter_sp.__SH024 3
Acinetobacter_calcoaceticus_ruh2202 2
Acinetobacter_baumannii_ZW85-1 3
Acinetobacter_baumannii_TYTH-1 3
Acinetobacter_baumannii_BJAB0868 2
Acinetobacter_baumannii_BJAB0715 3
Acinetobacter_baumannii_BJAB07104 2
Acinetobacter_baumannii_TCDC-AB0715 2
Acinetobacter_baumannii_D1279779 2
Acinetobacter_baumannii_MDR-TJ 2
Acinetobacter_baumannii_1656-2 2
Acinetobacter_baumannii__ATCC_19606 3
Acinetobacter_baumannii_AB307-0294 3
Acinetobacter_baumannii_AYE 3
Acinetobacter_baumannii_MDR-ZJ06 2
Acinetobacter_baumannii_AB0057 3
Acinetobacter_baumannii_ACICU 2
Acinetobacter_johnsonii__SH046 1
Methylophaga_sp._JAM7 1
Francisella_noatunensis_subsp._orientalis_LADL--07-285A 0
Aeropyrum_camini_SY1_=_JCM_12091 1
Halovivax_ruber_XH-70 1
Natrinema_pellirubrum_DSM_15624 1
Natronococcus_occultus_SP4 1
Natronobacterium_gregoryi_SP2 2
Halorhabdus_tiamatea_SARL4B 1
Haloarcula_hispanica_N601 1
Methanobacterium_sp._SWAN-1 0

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   2
Gorilla_gorilla_69_3.1   (Western gorilla)   1
Pongo_abelii_69_2   (Sumatran orangutan)   3
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   2
Macaca_mulatta_69_1   (Rhesus monkey)   3
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   2
Otolemur_garnettii_69_3   (Small-eared galago)   2
Microcebus_murinus_69_1   (Gray mouse lemur)   2
Rattus_norvegicus_69_3.4   (Norway rat)   2
Mus_musculus_69_38   (House mouse)   3
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   3
Cavia_porcellus_69_3   (Domestic guinea pig)   4
Oryctolagus_cuniculus_69_2   (Rabbit)   3
Ochotona_princeps_69   (American pika)   2
Tupaia_belangeri_69   (Northern tree shrew)   1
Sus_scrofa_69_10.2   (Pig)   5
Bos_taurus_69_3.1   (Cattle)   3
Vicugna_pacos_69_1   (Alpaca)   1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   3
Ailuropoda_melanoleuca_69_1   (Giant panda)   4
Canis_familiaris_69_3.1   (Dog)   5
Felis_catus_69   (Domestic cat)   1
Equus_caballus_69_2   (Horse)   4
Myotis_lucifugus_69_2.0   (Little brown bat)   2
Pteropus_vampyrus_69_1   (Large flying fox)   1
Sorex_araneus_69_1   (European shrew)   0
Erinaceus_europaeus_69   (Western European hedgehog)   2
Procavia_capensis_69_1   (Cape rock hyrax)   0
Loxodonta_africana_69_3   (African savanna elephant)   3
Echinops_telfairi_69   (Small Madagascar hedgehog)   0
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   2
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   3
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   5
Ornithorhynchus_anatinus_69_5   (Platypus)   5
Petromyzon_marinus_69_7.0   (Sea lamprey)   2
Meleagris_gallopavo_69_2   (Turkey)   2
Gallus_gallus_69_2   (Chicken)   4
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   3
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   2
Anolis_carolinensis_69_2.0   (Green anole)   1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   2
Latimeria_chalumnae_69_1   (Coelacanth)   6
Gadus_morhua_69_1   (Atlantic cod)   7
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   9
Takifugu_rubripes_69_4   (Torafugu)   7
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   4
Oryzias_latipes_69_1   (Japanese medaka)   2
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   4
Oreochromis_niloticus_69_1.0   (Nile tilapia)   4
Danio_rerio_69_9   (Zebrafish)   4
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_69   (Vase tunicate)   1
Drosophila_melanogaster_69_5   (Fruit fly)   3
Caenorhabditis_elegans_69_215   (Roundworm)   4
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   4
Arabidopsis_thaliana_10   (Thale cress)   9

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   20
Homo_sapiens__(NCBI_version)   (Human)   6
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   3
Heliconius_numata__(Incomplete) 1
Loa_loa_v3.3_(Request)   (Eye worm)   0
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   2
Moniliophthora_perniciosa_FA553__(Genome_survey) 2
Encephalitozoon_intestinalis__(endoparasite) 0
Encephalitozoon_cuniculi_(endoparasite) 1
Lotus_japonicus__(Early_assembly) 9
Malus_x_domestica_(Duplicate)   (Apple)   13
Ricinus_communis__(Early_assembly)   (Castor bean)   7
Nicotiana_benthamiana_0.4.4_(Early_draft) 8
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   12
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   12
Phoenix_dactylifera__(Early_draft)   (Date palm)   6
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 12
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1
NCBI_plasmid_sequences_(Plasmids) 34
STRING_v9.0.5_(STRING) 1506
Uniprot_2018_03_genome 97620
NCBI_2017_08_genome 138993
Protein_Data_Bank_(all_PDB_sequenc) 20
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 3
Core_Eukaryotic_Genes_458_(CEGMA) 3
TargetDB__(Targets) 34
Protozoadb_2010_08_(Protozoadb) 128

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.