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Domain combinations for _gap_,118290,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

118290 - WRKY DNA-binding domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Meloidogyne_hapla_ 1
Mucor_circinelloides_ 1
Rhizomucor_miehei_CAU432_ 0
Dictyostelium_discoideum 0
Dictyostelium_purpureum_ 1
Pinus_taeda   (Loblolly pine)   44
Picea_abies   (Norway spruce)   29
Eucalyptus_grandis_v201   (Rose gum)   48
Theobroma_cacao_B97-61/B2_v1   (Cacao)   29
Gossypium_raimondii_v221 111
Citrus_clementina_v165 33
Citrus_sinensis_v154   (Sweet orange)   37
Thellungiella_halophila_v173 38
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   79
Capsella_rubella_v183 44
Arabidopsis_lyrata_   (Lyrate rockcress)   45
Arabidopsis_thaliana_10   (Thale cress)   47
Carica_papaya_   (Papaya)   27
Medicago_truncatula_   (Barrel medic)   68
Phaseolus_vulgaris_v186   (French bean)   59
Glycine_max_v109   (Soybean)   101
Cucumis_sativus_v122   (Cucumber)   38
Fragaria_vesca_   (Wild strawberry)   33
Malus_domestica_v196   (Apple)   65
Prunus_persica_v139   (Peach)   32
Linum_usitatissimum_v200   (Flax)   54
Manihot_esculenta_v147   (Cassava)   60
Populus_trichocarpa_v156   (Black cottonwood)   52
Vitis_vinifera_   (Wine grape)   27
Mimulus_guttatus_v140   (Spotted monkey flower)   36
Solanum_lycopersicum_v.2.3   (Tomato)   47
Solanum_tuberosum_   (Potato)   60
Actinidia_chinensis_Hongyang_ 56
Aquilegia_coerulea_v195 18
Triticum_urartu_22 38
Triticum_aestivum_22   (Bread wheat)   48
Aegilops_tauschii_22 49
Brachypodium_distachyon_   (Stiff brome)   46
Oryza_barthii_22   (African wild rice)   54
Oryza_meridionalis_22 73
Oryza_glumaepatula_22 63
Oryza_glaberrima   (African rice)   53
Oryza_punctata_22 65
Oryza_nivara_22 70
Oryza_brachyantha_22   (Malo sina)   46
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   73
Oryza_sativa_v193   (Rice)   72
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   62
Panicum_virgatum_v202   (Switchgrass)   87
Setaria_italica_v164   (Foxtail millet)   66
Zea_mays_subsp._mays_   (Maize)   76
Zea_mays_v181   (Maize)   83
Sorghum_bicolor_   (Sorghum)   55
Musa_balbisiana   (Balbis banana)   84
Musa_acuminata_22   (Wild Malaysian banana)   82
Amborella_trichopoda_22 17
Physcomitrella_patens 6
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 1
Chlamydomonas_reinhardtii_4.0 0
Ostreococcus_sp._RCC809_ 2
Bathycoccus_prasinos_ 0
Thecamonas_trahens_ATCC_50062_ 2
Giardia_lamblia_2.3 0

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Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   28
Hordeum_vulgare_22   (Domesticated barley)   37
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   59

Longest transcript per gene
Genome     Number
Arabidopsis_thaliana_10   (Thale cress)   41

Others
Genome     Number
Lotus_japonicus__(Early_assembly) 25
Malus_x_domestica_(Duplicate)   (Apple)   65
Ricinus_communis__(Early_assembly)   (Castor bean)   29
Nicotiana_benthamiana_0.4.4_(Early_draft) 65
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   45
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   47
Phoenix_dactylifera__(Early_draft)   (Date palm)   19
Protozoadb_2010_08_(Protozoadb) 0
TargetDB__(Targets) 4
STRING_v9.0.5_(STRING) 366
NCBI_2017_08_genome 4540
Uniprot_2018_03_genome 27975

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.