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Home > SCOP hierarchy > Domain combination - _gap_,160527

Domain combinations for _gap_,160527 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

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Longest transcript per gene
Genome Number

Homo_sapiens_69_37 (Human) 2

Pan_troglodytes_69_2.1.4 (Chimpanzee) 1

Gorilla_gorilla_69_3.1 (Western gorilla) 2

Pongo_abelii_69_2 (Sumatran orangutan) 2

Nomascus_leucogenys_69_1.0 (Northern white-cheeked gibbon) 2

Macaca_mulatta_69_1 (Rhesus monkey) 2

Callithrix_jacchus_69_3.2.1 (White-tufted-ear marmoset) 4

Otolemur_garnettii_69_3 (Small-eared galago) 2

Microcebus_murinus_69_1 (Gray mouse lemur) 1

Rattus_norvegicus_69_3.4 (Norway rat) 2

Mus_musculus_69_38 (House mouse) 2

Dipodomys_ordii_69_1 (Ord's kangaroo rat) 2

Ictidomys_tridecemlineatus_69_2 (Thirteen-lined ground squirrel) 2

Cavia_porcellus_69_3 (Domestic guinea pig) 2

Oryctolagus_cuniculus_69_2 (Rabbit) 2

Ochotona_princeps_69 (American pika) 1

Tupaia_belangeri_69 (Northern tree shrew) 1

Sus_scrofa_69_10.2 (Pig) 2

Bos_taurus_69_3.1 (Cattle) 2

Vicugna_pacos_69_1 (Alpaca) 1

Tursiops_truncatus_69_1 (Bottlenose dolphin) 2

Mustela_putorius_furo_69_1.0 (Domestic ferret) 3

Ailuropoda_melanoleuca_69_1 (Giant panda) 3

Canis_familiaris_69_3.1 (Dog) 4

Felis_catus_69 (Domestic cat) 2

Equus_caballus_69_2 (Horse) 2

Myotis_lucifugus_69_2.0 (Little brown bat) 3

Pteropus_vampyrus_69_1 (Large flying fox) 2

Erinaceus_europaeus_69 (Western European hedgehog) 1

Procavia_capensis_69_1 (Cape rock hyrax) 1

Loxodonta_africana_69_3 (African savanna elephant) 2

Echinops_telfairi_69 (Small Madagascar hedgehog) 2

Dasypus_novemcinctus_69_2 (Nine-banded armadillo) 2

Choloepus_hoffmanni_69_1 (Hoffmann's two-fingered sloth) 2

Sarcophilus_harrisii_69_7.0 (Tasmanian devil) 1

Monodelphis_domestica_69_5 (Gray short-tailed opossum) 3

Petromyzon_marinus_69_7.0 (Sea lamprey) 1

Meleagris_gallopavo_69_2 (Turkey) 1

Gallus_gallus_69_2 (Chicken) 1

Taeniopygia_guttata_69_3.2.4 (Zebra finch) 2

Pelodiscus_sinensis_69_1.0 (Chinese soft-shelled turtle) 1

Anolis_carolinensis_69_2.0 (Green anole) 1

Xenopus_tropicalis_69_4.2 (Tropical clawed frog) 2

Latimeria_chalumnae_69_1 (Coelacanth) 1

Gadus_morhua_69_1 (Atlantic cod) 2

Tetraodon_nigroviridis_69_8 (Spotted green pufferfish) 2

Takifugu_rubripes_69_4 (Torafugu) 2

Gasterosteus_aculeatus_69_1 (Three-spined stickleback) 2

Oryzias_latipes_69_1 (Japanese medaka) 2

Xiphophorus_maculatus_69_4.4.2 (Southern platyfish) 2

Oreochromis_niloticus_69_1.0 (Nile tilapia) 2

Danio_rerio_69_9 (Zebrafish) 2

Ciona_savignyi_69_2.0 (Pacific transparent sea squirt) 1

Ciona_intestinalis_69 (Vase tunicate) 1

Drosophila_melanogaster_69_5 (Fruit fly) 1

Caenorhabditis_elegans_69_215 (Roundworm) 1

Saccharomyces_cerevisiae_69_4 (Baker's yeast) 1

Arabidopsis_thaliana_10 (Thale cress) 3

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Others
Genome Number

Homo_sapiens_75_37_(old_version_GRC) (Human) 6

Homo_sapiens__(NCBI_version) (Human) 4

Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate) (House mouse) 2

Heliconius_numata__(Incomplete) 2

Loa_loa_v3.3_(Request) (Eye worm) 1

Wuchereria_bancrofti_v1.0_(Request) (Agent of lymphatic filariasis) 1

Brugia_malayi_v1.0_(Duplicate) (Agent of lymphatic filariasis) 1

Encephalitozoon_intestinalis__(endoparasite) 1

Encephalitozoon_cuniculi_(endoparasite) 1

Malus_x_domestica_(Duplicate) (Apple) 2

Ricinus_communis__(Early_assembly) (Castor bean) 1

Nicotiana_benthamiana_0.4.4_(Early_draft) 6

Solanum_pimpinellifolium_A-1.0_(Early_draft) (Currant tomato) 3

Solanum_lycopersicum_v2.3_(Early_assembly) (Tomato) 3

Phoenix_dactylifera__(Early_draft) (Date palm) 3

Acholeplasma_laidlawii_PG-8A_(duplicate) 2

Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 2

NCBI_plasmid_sequences_(Plasmids) 25

Core_Eukaryotic_Genes_458_(CEGMA) 6

NCBI_viral_sequences_(Viral) 1

TargetDB__(Targets) 34

Protozoadb_2010_08_(Protozoadb) 48

Protein_Data_Bank_(all_PDB_sequenc) 53

STRING_v9.0.5_(STRING) 385

Uniprot_2018_03_genome 21054

NCBI_2017_08_genome 13944

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Domain combinations for _gap_,160527 superfamilies in groups of genomes