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  Home > SCOP hierarchy > Domain combination - _gap_,51269

Domain combinations for _gap_,51269 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

51269 - AFP III-like domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Kineococcus_radiotolerans_SRS30216 0
Propionibacterium_propionicum_F0230a 0
Sphaerobacter_thermophilus_DSM_20745 0
Natranaerobius_thermophilus_JW/NM-WN-LF 0
Thermovirga_lienii_DSM_17291 0
Thermotoga_thermarum_DSM_5069 0
Thermotoga_sp._RQ2 0
Thermotoga_naphthophila_RKU-10 0
Thermotoga_petrophila_RKU-1 0
Thermotoga_neapolitana_DSM_4359 0
Thermotoga_maritima_MSB8 0
Thermovibrio_ammonificans_HB-1 0
Desulfurobacterium_thermolithotrophum_DSM_11699 0
Persephonella_marina_EX-H1 0
Acidithiobacillus_caldus_SM-1 0
Nitratiruptor_sp._SB155-2 0
Syntrophus_aciditrophicus_SB 0
Desulfobulbus_propionicus_DSM_2032 0
Desulfohalobium_retbaense_DSM_5692 0
Geobacter_daltonii_FRC-32 0
Geobacter_lovleyi_SZ 0
Geobacter_sulfurreducens_KN400 0
Geobacter_metallireducens_GS-15 0
Myxococcus_xanthus_DK_1622 0
Myxococcus_fulvus_HW-1 0
Thiomonas_arsenitoxydans 0
Thiomonas_intermedia_K12 0
Burkholderia_sp._RPE64 0
Bordetella_avium_197N 0
Achromobacter_xylosoxidans 0
Methylobacillus_flagellatus_KT 0
Pseudovibrio_sp._FO-BEG1 0
Vibrio_splendidus_LGP32 0
Photobacterium_profundum_SS9 0
Shewanella_oneidensis_MR-1 0
Shewanella_woodyi_ATCC_51908 0
Shewanella_violacea_DSS12 0
Methylomicrobium_alcaliphilum 0
Erwinia_amylovora_ATCC_49946 0

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Strains
Genome     Number
Thermotoga_maritima_MSB8 0
Geobacter_sp._M18 0
Geobacter_sulfurreducens_PCA 0
Myxococcus_stipitatus_DSM_14675 0
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 0
Alcanivorax_dieselolei_B5 0
Serratia_marcescens_FGI94 0
Serratia_marcescens_WW4 0
Erwinia_amylovora_CFBP1430 0
Pseudomonas_syringae_pv._phaseolicola_1448A 0
Pseudomonas_syringae_pv._syringae_B728a 0

Others
Genome     Number
Ricinus_communis__(Early_assembly)   (Castor bean)   0
NCBI_plasmid_sequences_(Plasmids) 0
Protein_Data_Bank_(all_PDB_sequenc) 0
TargetDB__(Targets) 0
STRING_v9.0.5_(STRING) 0
Uniprot_2018_03_genome 81
NCBI_2017_08_genome 9

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.