SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for _gap_,53474,53474 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

53474 - alpha/beta-Hydrolases
53474 - alpha/beta-Hydrolases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Jump to [ Top of page · Domain combinations in individual genomes ]

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Microcebus_murinus_76_1   (Gray mouse lemur)   3
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   0
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   0
Ochotona_princeps_76   (American pika)   4
Tupaia_belangeri_76   (Northern tree shrew)   1
Vicugna_pacos_76_1   (Alpaca)   2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   2
Sorex_araneus_76_1   (European shrew)   2
Erinaceus_europaeus_76   (Western European hedgehog)   2
Procavia_capensis_76_1   (Cape rock hyrax)   3
Echinops_telfairi_76   (Small Madagascar hedgehog)   2
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_76_1.0   (Tammar wallaby)   1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1
Saccoglossus_kowalevskii_v3.0 1
Gadus_morhua_76_1   (Atlantic cod)   0
Takifugu_rubripes_76_4   (Torafugu)   1
Astyanax_mexicanus_76   (Mexican tetra)   0
Danio_rerio_76_9   (Zebrafish)   0
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   2
Adineta_vaga 0
Capitella_sp._I_ 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   0
Heliconius_melpomene_   (Postman butterfly)   1
Bombyx_mori_   (Domestic silkworm)   3
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   0
Atta_cephalotes_v1.1 0
Lucilia_cuprina   (Australian sheep blowfly)   2
Drosophila_willistoni_1.3 0
Drosophila_pseudoobscura_2.13 1
Drosophila_persimilis_1.3 0
Drosophila_suzukii 3
Drosophila_yakuba_1.3 0
Drosophila_mojavensis_1.3 0
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1
Anopheles_darlingi_22   (American malaria mosquito)   0
Acyrthosiphon_pisum_   (Pea aphid)   0
Strigamia_maritima_22 2
Tetranychus_urticae_   (Two-spotted spider mite)   1
Meloidogyne_incognita_   (Southern root-knot nematode)   1
Caenorhabditis_japonica_ 0
Caenorhabditis_remanei_ 1
Caenorhabditis_elegans_76_235   (Roundworm)   1
Mnemiopsis_leidyi   (Sea walnut)   1
Amphimedon_queenslandica 1
Sphaeroforma_arctica_JP610_ 3
Capsaspora_owczarzaki_ATCC_30864_ 0
Mortierella_verticillata_NRRL_6337_ 0
Sporisorium_reilianum_22 1
Ustilago_maydis_ 1
Rhodotorula_graminis_WP1_v1.0 1
Sphaerobolus_stellatus_v1.0 0
Serpula_lacrymans_var._lacrymans_S7.9_ 1
Hydnomerulius_pinastri_v2.0 1
Pisolithus_microcarpus_441_v1.0 1
Pisolithus_tinctorius_Marx_270_v1.0 1
Coprinopsis_cinerea_okayama7_130_v3 0
Schizophyllum_commune_ 1
Heterobasidion_annosum_ 0
Punctularia_strigosozonata_v1.0 1
Sebacina_vermifera_MAFF_305830_v1.0 0
Postia_placenta_ 1
Dichomitus_squalens 2
Trametes_versicolor_v1.0 1
Daldinia_eschscholzii_EC12_v1.0 1
Apiospora_montagnei_NRRL_25634_v1.0 1
Podospora_anserina_ 0
Chaetomium_globosum_CBS_148.51_ 2
Neurospora_tetrasperma_ 1
Neurospora_crassa_OR74A_ 1
Verticillium_dahliae_VdLs.17_ 1
Nectria_haematococca_mpVI_ 0
Trichoderma_asperellum_CBS_433.97_v1.0 1
Trichoderma_atroviride_ 2
Trichoderma_virens_Gv29-8_ 1
Trichoderma_harzianum_CBS_226.95_v1.0 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   1
Sclerotinia_sclerotiorum_ 1
Didymella_exigua_CBS_183.55_v1.0 1
Cochliobolus_victoriae_FI3_v1.0 1
Cochliobolus_carbonum_26-R-13_v1.0 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1
Mycosphaerella_graminicola_IPO323_ 1
Zasmidium_cellare_ATCC_36951_v1.0 3
Dothistroma_septosporum 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1
Coccidioides_posadasii_RMSCC_3488_ 1
Coccidioides_immitis_RS_ 1
Aspergillus_zonatus_v1.0 0
Penicillium_chrysogenum_v1.0 0
Aspergillus_acidus_v1.0 2
Aspergillus_brasiliensis_v1.0 1
Aspergillus_sydowii_v1.0 2
Aspergillus_versicolor_v1.0 1
Aspergillus_carbonarius_ITEM_5010_ 1
Aspergillus_tubingensis_v1.0 1
Aspergillus_oryzae_RIB40_ 1
Aspergillus_niger_ATCC_1015_ 2
Aspergillus_flavus_NRRL3357_ 1
Aspergillus_clavatus_NRRL_1_ 1
Lachancea_kluyveri_ 1
Saccharomyces_mikatae_MIT 0
Saccharomyces_paradoxus_MIT 0
Allomyces_macrogynus_ATCC_38327_ 1
Pinus_taeda   (Loblolly pine)   5
Picea_abies   (Norway spruce)   2
Eucalyptus_grandis_v201   (Rose gum)   1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1
Medicago_truncatula_   (Barrel medic)   2
Phaseolus_vulgaris_v186   (French bean)   1
Glycine_max_v109   (Soybean)   0
Fragaria_vesca_   (Wild strawberry)   1
Malus_domestica_v196   (Apple)   1
Linum_usitatissimum_v200   (Flax)   0
Vitis_vinifera_   (Wine grape)   3
Mimulus_guttatus_v140   (Spotted monkey flower)   1
Solanum_tuberosum_   (Potato)   2
Actinidia_chinensis_Hongyang_ 2
Triticum_urartu_22 2
Aegilops_tauschii_22 1
Oryza_barthii_22   (African wild rice)   4
Oryza_meridionalis_22 2
Oryza_glumaepatula_22 4
Oryza_punctata_22 4
Oryza_nivara_22 2
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   4
Setaria_italica_v164   (Foxtail millet)   1
Zea_mays_subsp._mays_   (Maize)   1
Zea_mays_v181   (Maize)   2
Sorghum_bicolor_   (Sorghum)   0
Musa_balbisiana   (Balbis banana)   1
Physcomitrella_patens 1
Coccomyxa_subellipsoidea_sp._C-169_v2 1
Asterochloris_sp._Cgr/DA1pho_v1.0 0
Chlorella_variabilis_sp._NC64A_ 1
Chlorella_vulgaris_ 1
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 3
Chlamydomonas_reinhardtii_4.0 1
Bathycoccus_prasinos_ 0
Micromonas_sp._RCC299_ 0
Bigelowiella_natans_CCMP2755_22 0
Giardia_lamblia_2.3 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 0
Ectocarpus_siliculosus 0
Aureococcus_anophagefferens_ 0
Pythium_iwayamai_DAOM_BR242034_22 1
Pythium_arrhenomanes_ATCC_12531_22 1
Pythium_ultimum_v1.7-2 0
Pythium_aphanidermatum_DAOM_BR444_22 1
Pythium_irregulare_DAOM_BR486_22 1
Pythium_vexans_DAOM_BR484_22 0
Phytophthora_ramorum_1.1   (Sudden oak death agent)   2
Phytophthora_sojae_1.1 2
Phytophthora_infestans_T30-4_ 0
Phytophthora_capsici_ 2
Hyaloperonospora_arabidopsidis_22 1
Fragilariopsis_cylindrus 3
Thalassiosira_pseudonana_CCMP1335 1
Perkinsus_marinus_ATCC_50983_ 1
Ichthyophthirius_multifiliis_strain_G5_ 0
Neospora_caninum 1
Toxoplasma_gondii_VEG 0
Toxoplasma_gondii_ME49 0
Toxoplasma_gondii_GT1 0
Plasmodium_vivax_SaI-1_7.0 1
Plasmodium_yoelii_ssp._yoelii_1_ 1
Symbiodinium_minutum_clade_B1_v1.2 2
Guillardia_theta_CCMP2712_v1.0_ 1
Emiliania_huxleyi_CCMP1516_ 1
Streptosporangium_roseum_DSM_43021 0
Saccharopolyspora_erythraea_NRRL_2338 1
Amycolatopsis_mediterranei_U32 1
Gordonia_bronchialis_DSM_43247 0
Amycolicicoccus_subflavus_DQS3-9A1 0
Mycobacterium_gilvum_PYR-GCK 1
Rothia_mucilaginosa_DY-18 0
Arthrobacter_sp._FB24 1
Faecalibacterium_prausnitzii 1
Roseburia_intestinalis 1
Haliscomenobacter_hydrossis_DSM_1100 0
Chitinophaga_pinensis_DSM_2588 0
Cyclobacterium_marinum_DSM_745 1
Spirosoma_linguale_DSM_74 0
Isosphaera_pallida_ATCC_43644 1
Rhodopirellula_baltica_SH_1 1
Pirellula_staleyi_DSM_6068 1
Treponema_primitia_ZAS-2 1
Petrotoga_mobilis_SJ95 0
Thermotoga_sp._RQ2 0
Thermotoga_naphthophila_RKU-10 0
Thermotoga_petrophila_RKU-1 0
Thermotoga_maritima_MSB8 0
Desulfobulbus_propionicus_DSM_2032 0
Geobacter_metallireducens_GS-15 0
Haliangium_ochraceum_DSM_14365 1
Corallococcus_coralloides_DSM_2259 1
Myxococcus_xanthus_DK_1622 1
Myxococcus_fulvus_HW-1 1
Dechloromonas_aromatica_RCB 0
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 0
Rubrivivax_gelatinosus_IL144 0
Ralstonia_pickettii_12D 1
Ralstonia_solanacearum_CFBP2957 1
Burkholderia_thailandensis_E264 0
Rhodoferax_ferrireducens_T118 0
Starkeya_novella_DSM_506 1
Xanthobacter_autotrophicus_Py2 0
Rhizobium_etli_CIAT_652 1
Rhizobium_leguminosarum_bv._viciae_3841 1
Methylocystis_sp._SC2 1
Saccharophagus_degradans_2-40 1
Marinobacter_hydrocarbonoclasticus_ATCC_49840 1
Marinobacter_aquaeolei_VT8 1
Xenorhabdus_bovienii_SS-2004 1
Pseudomonas_aeruginosa_UCBPP-PA14 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   3
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1
Coccidioides_immitis_RMSCC_3703_ 1
Coccidioides_immitis_RMSCC_2394_ 1
Coccidioides_immitis_H538.4_ 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   4
Neospora_caninum_Nc-Liverpool_6.2 1
Streptomyces_collinus_Tu_365 1
Amycolatopsis_mediterranei_RB 1
Amycolatopsis_mediterranei_S699 1
Amycolatopsis_mediterranei_S699 1
Mycobacterium_gilvum_Spyr1 1
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 0
Actinomyces_graevenitzii_C83_ 0
Actinomyces_odontolyticus_ATCC_17982 2
Roseburia_intestinalis_XB6B4 1
Singulisphaera_acidiphila_DSM_18658 1
Thermotoga_maritima_MSB8 0
Ralstonia_pickettii_12J 1
Ralstonia_solanacearum_FQY_4 1
Ralstonia_solanacearum_Po82 1
Ralstonia_solanacearum_PSI07 1
Ralstonia_solanacearum_CMR15 1
Ralstonia_solanacearum_GMI1000 1
Burkholderia_sp._YI23 0
Burkholderia_pseudomallei_1710b 1
Rhizobium_etli_CFN_42 1
Rhizobium_etli_bv._mimosae_str._Mim1 1
Rhizobium_leguminosarum_bv._trifolii_WSM2304 1
Rhizobium_leguminosarum_bv._trifolii_WSM1325 1
Bradyrhizobium_japonicum_USDA_6 0
Xanthomonas_oryzae_pv._oryzicola_BLS256 0
Pseudomonas_aeruginosa_SCV20265 1
Pseudomonas_aeruginosa_MTB-1 1
Pseudomonas_aeruginosa_RP73 1
Pseudomonas_aeruginosa_DK2 1
Pseudomonas_aeruginosa_M18 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number
Microcebus_murinus_69_1   (Gray mouse lemur)   3
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   0
Ochotona_princeps_69   (American pika)   4
Tupaia_belangeri_69   (Northern tree shrew)   1
Vicugna_pacos_69_1   (Alpaca)   2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   2
Felis_catus_69   (Domestic cat)   1
Sorex_araneus_69_1   (European shrew)   2
Erinaceus_europaeus_69   (Western European hedgehog)   2
Procavia_capensis_69_1   (Cape rock hyrax)   3
Echinops_telfairi_69   (Small Madagascar hedgehog)   2
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1
Macropus_eugenii_69_1.0   (Tammar wallaby)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1
Gadus_morhua_69_1   (Atlantic cod)   0
Takifugu_rubripes_69_4   (Torafugu)   1
Danio_rerio_69_9   (Zebrafish)   0
Caenorhabditis_elegans_69_215   (Roundworm)   1

Others
Genome     Number
Malus_x_domestica_(Duplicate)   (Apple)   1
Nicotiana_benthamiana_0.4.4_(Early_draft) 3
Phoenix_dactylifera__(Early_draft)   (Date palm)   2
NCBI_plasmid_sequences_(Plasmids) 8
TargetDB__(Targets) 1
STRING_v9.0.5_(STRING) 54
Uniprot_2018_03_genome 5750
NCBI_2017_08_genome 2190
Protozoadb_2010_08_(Protozoadb) 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]