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  Home > SCOP hierarchy > Domain combination - _gap_,90123,52540,_gap_,90123,52540

Domain combinations for _gap_,90123,52540,_gap_,90123,52540 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

90123 - ABC transporter transmembrane region
52540 - P-loop containing nucleoside triphosphate hydrolases
90123 - ABC transporter transmembrane region
52540 - P-loop containing nucleoside triphosphate hydrolases

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.

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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   10
Pan_troglodytes_76_2.1.4   (Chimpanzee)   5
Gorilla_gorilla_76_3.1   (Western gorilla)   7
Pongo_abelii_76_2   (Sumatran orangutan)   8
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   5
Papio_anubis_76   (Olive baboon)   8
Macaca_mulatta_76_1   (Rhesus monkey)   6
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   7
Otolemur_garnettii_76_3   (Small-eared galago)   7
Microcebus_murinus_76_1   (Gray mouse lemur)   4
Rattus_norvegicus_76_5.0   (Norway rat)   7
Mus_musculus_76_38   (House mouse)   13
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   2
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   7
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   5
Cavia_porcellus_76_3   (Domestic guinea pig)   8
Oryctolagus_cuniculus_76_2   (Rabbit)   8
Ochotona_princeps_76   (American pika)   6
Tupaia_belangeri_76   (Northern tree shrew)   5
Sus_scrofa_76_10.2   (Pig)   6
Bos_taurus_76_3.1   (Cattle)   8
Ovis_aries_76_3.1   (Sheep)   8
Vicugna_pacos_76_1   (Alpaca)   4
Tursiops_truncatus_76_1   (Bottlenose dolphin)   5
Mustela_putorius_furo_76_1.0   (Domestic ferret)   8
Ailuropoda_melanoleuca_76_1   (Giant panda)   7
Canis_familiaris_76_3.1   (Dog)   11
Felis_catus_76_6.2   (Domestic cat)   7
Equus_caballus_76_2   (Horse)   10
Myotis_lucifugus_76_2.0   (Little brown bat)   6
Pteropus_vampyrus_76_1   (Large flying fox)   5
Sorex_araneus_76_1   (European shrew)   1
Erinaceus_europaeus_76   (Western European hedgehog)   4
Procavia_capensis_76_1   (Cape rock hyrax)   6
Loxodonta_africana_76_3   (African savanna elephant)   8
Echinops_telfairi_76   (Small Madagascar hedgehog)   4
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   6
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   2
Macropus_eugenii_76_1.0   (Tammar wallaby)   7
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   11
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   5
Ornithorhynchus_anatinus_76_5   (Platypus)   6
Saccoglossus_kowalevskii_v3.0 1
Petromyzon_marinus_76_7.0   (Sea lamprey)   1
Meleagris_gallopavo_76_2   (Turkey)   10
Gallus_gallus_76_4   (Chicken)   7
Anas_platyrhynchos_76_1.0   (Mallard)   9
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   5
Ficedula_albicollis_76_1.0   (Collared flycatcher)   7
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   8
Anolis_carolinensis_76_2.0   (Green anole)   6
Xenopus_laevis_   (African clawed frog)   3
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   5
Latimeria_chalumnae_76_1   (Coelacanth)   3
Lepisosteus_oculatus_76   (Spotted gar)   14
Gadus_morhua_76_1   (Atlantic cod)   5
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   6
Takifugu_rubripes_76_4   (Torafugu)   41
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   10
Oryzias_latipes_76_1   (Japanese medaka)   10
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   6
Poecilia_formosa_76   (Amazon molly)   9
Oreochromis_niloticus_76_1.0   (Nile tilapia)   9
Astyanax_mexicanus_76   (Mexican tetra)   8
Danio_rerio_76_9   (Zebrafish)   11
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   17
Ciona_intestinalis_76   (Vase tunicate)   1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1
Adineta_vaga 8
Octopus_bimaculoides_280 3
Crassostrea_gigas_22   (Pacific oyster)   3
Lottia_gigantea_   (Owl limpet)   3
Helobdella_robusta_ 4
Capitella_sp._I_ 4
Danaus_plexippus_OGS1.0   (Monarch butterfly)   4
Heliconius_melpomene_   (Postman butterfly)   1
Bombyx_mori_   (Domestic silkworm)   1
Nasonia_vitripennis_   (Jewel wasp)   6
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   10
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   2
Linepithema_humile_v1.1   (Argentine ant)   2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   5
Atta_cephalotes_v1.1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1
Lucilia_cuprina   (Australian sheep blowfly)   4
Drosophila_grimshawi_1.3 6
Drosophila_willistoni_1.3 6
Drosophila_pseudoobscura_2.13 5
Drosophila_persimilis_1.3 4
Drosophila_suzukii 0
Drosophila_yakuba_1.3 5
Drosophila_simulans_1.3 4
Drosophila_sechellia_1.3 5
Drosophila_melanogaster_76_5   (Fruit fly)   25
Drosophila_erecta_1.3 6
Drosophila_ananassae_1.3 3
Drosophila_virilis_1.2 4
Drosophila_mojavensis_1.3 4
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   2
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   3
Anopheles_darlingi_22   (American malaria mosquito)   2
Anopheles_gambiae_49_3j   (African malaria mosquito)   3
Tribolium_castaneum_3.0   (Red flour beetle)   1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   2
Acyrthosiphon_pisum_   (Pea aphid)   7
Daphnia_pulex_   (Common water flea)   1
Strigamia_maritima_22 3
Tetranychus_urticae_   (Two-spotted spider mite)   21
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   2
Pristionchus_pacificus_ 2
Meloidogyne_incognita_   (Southern root-knot nematode)   2
Meloidogyne_hapla_ 1
Onchocerca_volvulus_22 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   4
Caenorhabditis_japonica_ 8
Caenorhabditis_brenneri_ 11
Caenorhabditis_remanei_ 15
Caenorhabditis_elegans_76_235   (Roundworm)   19
Caenorhabditis_briggsae_2 10
Trichinella_spiralis_22 1
Echinococcus_multilocularis_ 2
Echinococcus_granulosus_ 2
Schistosoma_mansoni_ 3
Nematostella_vectensis_1.0   (Starlet sea anemone)   2
Hydra_vulgaris 1
Amphimedon_queenslandica 5
Trichoplax_adhaerens_ 6
Proterospongia_sp._ATCC_50818_ 4
Monosiga_brevicollis_ 1
Sphaeroforma_arctica_JP610_ 1
Capsaspora_owczarzaki_ATCC_30864_ 2
Conidiobolus_coronatus_NRRL28638_v1.0 5
Mortierella_verticillata_NRRL_6337_ 17
Phycomyces_blakesleeanus_ 11
Rhizopus_oryzae_RA_99-880_ 6
Mucor_circinelloides_ 13
Rhizomucor_miehei_CAU432_ 6
Malassezia_globosa_CBS_7966_ 4
Sporisorium_reilianum_22 6
Ustilago_maydis_ 7
Mixia_osmundae_IAM_14324_v1.0 4
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 2
Melampsora_laricis-populina_ 2
Rhodotorula_graminis_WP1_v1.0 3
Sporobolomyces_roseus_IAM_13481_ 4
Microbotryum_violaceum_22 2
Wallemia_sebi_v1.0 2
Sphaerobolus_stellatus_v1.0 4
Piloderma_croceum_F_1598_v1.0 4
Serpula_lacrymans_var._lacrymans_S7.9_ 3
Coniophora_puteana 7
Hydnomerulius_pinastri_v2.0 3
Paxillus_rubicundulus_Ve08.2h10_v1.0 2
Pisolithus_microcarpus_441_v1.0 2
Pisolithus_tinctorius_Marx_270_v1.0 3
Scleroderma_citrinum_Foug_A_v1.0 2
Coprinopsis_cinerea_okayama7_130_v3 2
Pleurotus_ostreatus_   (Oyster mushroom)   2
Amanita_thiersii_Skay4041_v1.0 4
Amanita_muscaria_Koide_v1.0   (Fly agaric)   2
Galerina_marginata_v1.0 3
Hebeloma_cylindrosporum_h7_v2.0 3
Laccaria_bicolor_S238N-H82_ 2
Agaricus_bisporus_var._bisporus_ 2
Schizophyllum_commune_ 4
Stereum_hirsutum_FP-91666_SS1__v1.0 4
Heterobasidion_annosum_ 2
Gloeophyllum_trabeumv1.0 2
Punctularia_strigosozonata_v1.0 4
Sebacina_vermifera_MAFF_305830_v1.0 6
Fomitiporia_mediterranea_v1.0 4
Tulasnella_calospora_AL13/4D_v1.0 5
Postia_placenta_ 3
Wolfiporia_cocos_MD-104_SS10__v1.0 3
Fomitopsis_pinicolav1.0 3
Fomitopsis_pinicola_FP-58527_SS1_v3.0 4
Phanerochaete_chrysosporium_RP-78_2.1 3
Dichomitus_squalens 4
Trametes_versicolor_v1.0 4
Tremella_mesenterica_   (Witches' butter)   3
Daldinia_eschscholzii_EC12_v1.0 4
Apiospora_montagnei_NRRL_25634_v1.0 5
Magnaporthe_poae_ATCC_64411_22 4
Magnaporthe_grisea_70-15_ 6
Podospora_anserina_ 6
Sporotrichum_thermophile_ATCC_42464_ 4
Thielavia_terrestris_NRRL_8126_ 6
Chaetomium_globosum_CBS_148.51_ 2
Neurospora_tetrasperma_ 2
Neurospora_discreta_FGSC_8579_ 5
Neurospora_crassa_OR74A_ 4
Cryphonectria_parasitica_   (Chestnut blight fungus)   6
Verticillium_dahliae_VdLs.17_ 6
Acremonium_alcalophilumv_1.0 4
Glomerella_graminicola_22 5
Fusarium_graminearum_ 5
Nectria_haematococca_mpVI_ 4
Fusarium_oxysporum_f._sp._lycopersici_4286_ 5
Fusarium_verticillioides_7600_ 4
Trichoderma_asperellum_CBS_433.97_v1.0 6
Trichoderma_atroviride_ 6
Trichoderma_citrinoviride_v1.0 7
Trichoderma_reesei_1.2 6
Trichoderma_virens_Gv29-8_ 6
Trichoderma_longibrachiatum_ATCC_18648_v1.0 7
Trichoderma_harzianum_CBS_226.95_v1.0 7
Amorphotheca_resinae_v1.0   (Creosote fungus)   5
Botrytis_cinerea_B05.10_ 3
Sclerotinia_sclerotiorum_ 4
Blumeria_graminis_22 2
Didymella_exigua_CBS_183.55_v1.0 1
Leptosphaeria_maculans_22 2
Setosphaeria_turcica_v1.0 2
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1
Cochliobolus_victoriae_FI3_v1.0 2
Cochliobolus_carbonum_26-R-13_v1.0 2
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1
Alternaria_brassicicola_ 1
Cochliobolus_lunatus_m118_v2.0 1
Pyrenophora_teres_f._teres_22 1
Pyrenophora_tritici-repentis_ 1
Stagonospora_nodorum_ 0
Mycosphaerella_graminicola_IPO323_ 1
Zasmidium_cellare_ATCC_36951_v1.0 4
Dothistroma_septosporum 4
Septoria_musiva_v1.0 2
Mycosphaerella_fijiensis_CIRAD86_ 3
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 3
Paracoccidioides_brasiliensis_Pb18_ 2
Coccidioides_posadasii_RMSCC_3488_ 5
Coccidioides_immitis_RS_ 5
Ajellomyces_dermatitidis_SLH14081_ 4
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 2
Microsporum_canis_CBS_113480_ 6
Trichophyton_equinum_CBS_127.97_ 5
Trichophyton_verrucosum_HKI_0517_ 6
Arthroderma_benhamiae_CBS_112371_ 5
Trichophyton_tonsurans_CBS_112818_ 5
Trichophyton_rubrum_CBS_118892_ 4
Uncinocarpus_reesii_1704_ 4
Aspergillus_zonatus_v1.0 5
Penicillium_chrysogenum_Wisconsin_54-1255_ 4
Penicillium_chrysogenum_v1.0 4
Aspergillus_acidus_v1.0 3
Aspergillus_fumigatus_Af293 6
Aspergillus_brasiliensis_v1.0 6
Aspergillus_nidulans_FGSC_A4_ 2
Aspergillus_sydowii_v1.0 2
Aspergillus_versicolor_v1.0 4
Aspergillus_glaucus 5
Aspergillus_carbonarius_ITEM_5010_ 3
Neosartorya_fischeri_NRRL_181_ 6
Aspergillus_terreus_NIH2624_ 5
Aspergillus_tubingensis_v1.0 3
Aspergillus_wentii_v1.0 5
Aspergillus_oryzae_RIB40_ 5
Aspergillus_niger_22 4
Aspergillus_niger_ATCC_1015_ 2
Aspergillus_flavus_NRRL3357_ 7
Aspergillus_clavatus_NRRL_1_ 7
Penicillium_marneffei_ATCC_18224_ 6
Hansenula_polymorpha_v2.0 1
Dekkera_bruxellensis_CBS_2499_v2.0 3
Pichia_membranifaciensv1.0 3
Candida_tanzawaensis_NRRL_Y-17324__v1.0 2
Candida_dubliniensis_CD36_ 3
Candida_tropicalis_MYA-3404_ 3
Candida_parapsilosis_ 6
Candida_albicans_SC5314 2
Lodderomyces_elongisporus_NRRL_YB-4239_ 3
Babjeviella_inositovora_NRRL_Y-12698_v1.0 4
Pichia_stipitis_CBS_6054_ 5
Candida_guilliermondii_ATCC_6260_ 2
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 5
Debaromyces_hansenii 2
Wickerhamomyces_anomalus 2
Pichia_pastoris_GS115_ 3
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 2
Yarrowia_lipolytica_CLIB122 6
Candida_lusitaniae_ATCC_42720_ 1
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 3
Vanderwaltozyma_polyspora_DSM_70294_ 3
Candida_glabrata_CBS138 4
Kluyveromyces_thermotolerans_CBS_6340 2
Lachancea_kluyveri_ 2
Kluyveromyces_waltii 2
Ashbya_gossypii_ATCC_10895_ 1
Zygosaccharomyces_rouxii_ 3
Saccharomyces_mikatae_MIT 1
Saccharomyces_paradoxus_MIT 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   2
Saccharomyces_bayanus_MIT 1
Kluyveromyces_lactis 3
Schizosaccharomyces_cryophilus_OY26_22 1
Schizosaccharomyces_octosporus_yFS286_ 2
Schizosaccharomyces_japonicus_yFS275_ 2
Schizosaccharomyces_pombe   (Fission yeast)   3
Catenaria_anguillulae_PL171_v1.0 16
Allomyces_macrogynus_ATCC_38327_ 12
Spizellomyces_punctatus_DAOM_BR117_ 7
Dictyostelium_discoideum 5
Dictyostelium_purpureum_ 1
Entamoeba_dispar_1.2 1
Entamoeba_invadens_1.2 3
Entamoeba_histolytica_1 1
Selaginella_moellendorffii_ 3
Pinus_taeda   (Loblolly pine)   3
Picea_abies   (Norway spruce)   3
Eucalyptus_grandis_v201   (Rose gum)   12
Theobroma_cacao_B97-61/B2_v1   (Cacao)   5
Gossypium_raimondii_v221 19
Citrus_clementina_v165 6
Citrus_sinensis_v154   (Sweet orange)   8
Thellungiella_halophila_v173 9
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   10
Capsella_rubella_v183 9
Arabidopsis_lyrata_   (Lyrate rockcress)   8
Arabidopsis_thaliana_10   (Thale cress)   8
Carica_papaya_   (Papaya)   1
Medicago_truncatula_   (Barrel medic)   22
Phaseolus_vulgaris_v186   (French bean)   10
Glycine_max_v109   (Soybean)   8
Cucumis_sativus_v122   (Cucumber)   7
Fragaria_vesca_   (Wild strawberry)   6
Malus_domestica_v196   (Apple)   11
Prunus_persica_v139   (Peach)   10
Linum_usitatissimum_v200   (Flax)   11
Manihot_esculenta_v147   (Cassava)   7
Populus_trichocarpa_v156   (Black cottonwood)   9
Vitis_vinifera_   (Wine grape)   1
Mimulus_guttatus_v140   (Spotted monkey flower)   7
Solanum_lycopersicum_v.2.3   (Tomato)   6
Solanum_tuberosum_   (Potato)   5
Actinidia_chinensis_Hongyang_ 5
Aquilegia_coerulea_v195 11
Triticum_urartu_22 2
Triticum_aestivum_22   (Bread wheat)   4
Aegilops_tauschii_22 3
Brachypodium_distachyon_   (Stiff brome)   6
Oryza_barthii_22   (African wild rice)   7
Oryza_meridionalis_22 6
Oryza_glumaepatula_22 12
Oryza_glaberrima   (African rice)   5
Oryza_punctata_22 8
Oryza_nivara_22 10
Oryza_brachyantha_22   (Malo sina)   5
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   7
Oryza_sativa_v193   (Rice)   7
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1
Panicum_virgatum_v202   (Switchgrass)   6
Setaria_italica_v164   (Foxtail millet)   6
Zea_mays_subsp._mays_   (Maize)   4
Zea_mays_v181   (Maize)   4
Sorghum_bicolor_   (Sorghum)   6
Musa_balbisiana   (Balbis banana)   2
Amborella_trichopoda_22 5
Physcomitrella_patens 2
Asterochloris_sp._Cgr/DA1pho_v1.0 1
Chlorella_variabilis_sp._NC64A_ 2
Volvox_carteri_f._nagariensis_ 1
Volvox_carteri_v199 1
Chlamydomonas_reinhardtii_4.0 2
Micromonas_pusilla_CCMP1545_v3.0 2
Porphyridium_purpureum_02_2012 3
Thecamonas_trahens_ATCC_50062_ 3
Bigelowiella_natans_CCMP2755_22 1
Leishmania_mexicana_2.4 2
Leishmania_major_strain_Friedlin_ 2
Leishmania_infantum_JPCM5_2.4 2
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1
Ectocarpus_siliculosus 4
Aureococcus_anophagefferens_ 0
Pythium_iwayamai_DAOM_BR242034_22 3
Pythium_arrhenomanes_ATCC_12531_22 2
Pythium_ultimum_v1.7-2 5
Pythium_aphanidermatum_DAOM_BR444_22 6
Pythium_irregulare_DAOM_BR486_22 5
Pythium_vexans_DAOM_BR484_22 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   0
Phytophthora_sojae_1.1 1
Hyaloperonospora_arabidopsidis_22 0
Phaeodactylum_tricornutumCCAP_1055/1 1
Perkinsus_marinus_ATCC_50983_ 2
Paramecium_tetraurelia_ 5
Tetrahymena_thermophila_SB210_1_ 10
Ichthyophthirius_multifiliis_strain_G5_ 1
Cryptosporidium_hominis 2
Cryptosporidium_muris 4
Cryptosporidium_parvum_Iowa_II 4
Neospora_caninum 2
Toxoplasma_gondii_VEG 2
Toxoplasma_gondii_ME49 2
Toxoplasma_gondii_GT1 2
Babesia_bovis_T2Bo_ 0
Theileria_parva__ 1
Theileria_annulata 2
Plasmodium_falciparum_3D7_ 1
Plasmodium_vivax_SaI-1_7.0 0
Plasmodium_knowlesi_strain_H_ 0
Plasmodium_yoelii_ssp._yoelii_1_ 1
Plasmodium_chabaudi_ 1
Plasmodium_berghei_ANKA_ 1
Symbiodinium_minutum_clade_B1_v1.2 2
Naegleria_gruberi_ 1
Guillardia_theta_CCMP2712_v1.0_ 2
Trichodesmium_erythraeum_IMS101 1
Nostoc_punctiforme_PCC_73102 1
Nakamurella_multipartita_DSM_44233 1
Catenulispora_acidiphila_DSM_44928 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1
Actinosynnema_mirum_DSM_43827 1
Gordonia_bronchialis_DSM_43247 1
Rhodococcus_jostii_RHA1 1
Isosphaera_pallida_ATCC_43644 1
beta_proteobacterium_CB 1
Azospirillum_lipoferum_4B 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   6
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   23
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   4
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   18
Cryptococcus_neoformans_var._grubii_H99_ 4
Cryptococcus_neoformans_B-3501A_ 5
Cryptococcus_neoformans_JEC21_ 4
Paracoccidioides_brasiliensis_Pb01_ 3
Paracoccidioides_brasiliensis_Pb03_ 4
Coccidioides_posadasii_str._Silveira_ 5
Coccidioides_immitis_RMSCC_3703_ 1
Coccidioides_immitis_RMSCC_2394_ 4
Coccidioides_immitis_H538.4_ 1
Ajellomyces_dermatitidis_ER-3_ 4
Histoplasma_capsulatum_H143 3
Histoplasma_capsulatum_H88 4
Histoplasma_capsulatum_G186AR 5
Aspergillus_fumigatus_A1163_ 5
Candida_albicans_WO-1_ 3
Saccharomyces_cerevisiae_UC5 1
Saccharomyces_cerevisiae_PW5 2
Saccharomyces_cerevisiae_T7 2
Saccharomyces_cerevisiae_VL3 1
Saccharomyces_cerevisiae_Sigma1278b 2
Saccharomyces_cerevisiae_W303 2
Saccharomyces_cerevisiae_JAY291 2
Saccharomyces_cerevisiae_AWRI1631 1
Saccharomyces_cerevisiae_YJM789_ 2
Saccharomyces_cerevisiae_YJM789 2
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   2
Schizosaccharomyces_pombe_972h-_ 3
Batrachochytrium_dendrobatidis_JEL423_ 3
Batrachochytrium_dendrobatidis_JAM81_ 4
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   5
Hordeum_vulgare_22   (Domesticated barley)   4
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   5
Neospora_caninum_Nc-Liverpool_6.2 2
Plasmodium_falciparum_HB3_ 1
Plasmodium_falciparum_Dd2_ 1
Cyanothece_sp._PCC_7425 1
Frankia_sp._EuI1c 1
Corynebacterium_callunae_DSM_20147 1
Bifidobacterium_thermophilum_RBL67 1

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   8
Pan_troglodytes_69_2.1.4   (Chimpanzee)   5
Gorilla_gorilla_69_3.1   (Western gorilla)   6
Pongo_abelii_69_2   (Sumatran orangutan)   6
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   5
Macaca_mulatta_69_1   (Rhesus monkey)   5
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   5
Otolemur_garnettii_69_3   (Small-eared galago)   7
Microcebus_murinus_69_1   (Gray mouse lemur)   4
Rattus_norvegicus_69_3.4   (Norway rat)   5
Mus_musculus_69_38   (House mouse)   8
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   2
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   7
Cavia_porcellus_69_3   (Domestic guinea pig)   7
Oryctolagus_cuniculus_69_2   (Rabbit)   7
Ochotona_princeps_69   (American pika)   6
Tupaia_belangeri_69   (Northern tree shrew)   5
Sus_scrofa_69_10.2   (Pig)   5
Bos_taurus_69_3.1   (Cattle)   8
Vicugna_pacos_69_1   (Alpaca)   4
Tursiops_truncatus_69_1   (Bottlenose dolphin)   5
Mustela_putorius_furo_69_1.0   (Domestic ferret)   8
Ailuropoda_melanoleuca_69_1   (Giant panda)   7
Canis_familiaris_69_3.1   (Dog)   8
Felis_catus_69   (Domestic cat)   4
Equus_caballus_69_2   (Horse)   8
Myotis_lucifugus_69_2.0   (Little brown bat)   6
Pteropus_vampyrus_69_1   (Large flying fox)   5
Sorex_araneus_69_1   (European shrew)   1
Erinaceus_europaeus_69   (Western European hedgehog)   4
Procavia_capensis_69_1   (Cape rock hyrax)   6
Loxodonta_africana_69_3   (African savanna elephant)   7
Echinops_telfairi_69   (Small Madagascar hedgehog)   4
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   3
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   2
Macropus_eugenii_69_1.0   (Tammar wallaby)   7
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   8
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   5
Ornithorhynchus_anatinus_69_5   (Platypus)   5
Petromyzon_marinus_69_7.0   (Sea lamprey)   1
Meleagris_gallopavo_69_2   (Turkey)   9
Gallus_gallus_69_2   (Chicken)   7
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   5
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   5
Anolis_carolinensis_69_2.0   (Green anole)   6
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   5
Latimeria_chalumnae_69_1   (Coelacanth)   3
Gadus_morhua_69_1   (Atlantic cod)   5
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   4
Takifugu_rubripes_69_4   (Torafugu)   13
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   9
Oryzias_latipes_69_1   (Japanese medaka)   9
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   6
Oreochromis_niloticus_69_1.0   (Nile tilapia)   7
Danio_rerio_69_9   (Zebrafish)   9
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   7
Ciona_intestinalis_69   (Vase tunicate)   1
Drosophila_melanogaster_69_5   (Fruit fly)   7
Caenorhabditis_elegans_69_215   (Roundworm)   16
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   2
Arabidopsis_thaliana_10   (Thale cress)   7

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   13
Homo_sapiens__(NCBI_version)   (Human)   9
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   7
Loa_loa_v3.3_(Request)   (Eye worm)   3
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1
Lotus_japonicus__(Early_assembly) 2
Malus_x_domestica_(Duplicate)   (Apple)   11
Ricinus_communis__(Early_assembly)   (Castor bean)   6
Nicotiana_benthamiana_0.4.4_(Early_draft) 4
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   4
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   6
NCBI_plasmid_sequences_(Plasmids) 1
NCBI_2017_08_genome 6048
Uniprot_2018_03_genome 99540
Protozoadb_2010_08_(Protozoadb) 40
TargetDB__(Targets) 68
Protein_Data_Bank_(all_PDB_sequenc) 7
STRING_v9.0.5_(STRING) 524

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.