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Domain combinations for NinB superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a NinB domain in that genome.

Complete genomes
Genome     Number   Proteins
Trichinella_spiralis_22 1 1
Fibrella_aestuarina 1 1
Parabacteroides_distasonis_ATCC_8503 1 1
Bacteroides_vulgatus_ATCC_8482 1 1
Laribacter_hongkongensis_HLHK9 1 1
Neisseria_gonorrhoeae_NCCP11945 1 1
Methylibium_petroleiphilum_PM1 1 1
Burkholderia_vietnamiensis_G4 1 1
Burkholderia_glumae_BGR1 1 1
Delftia_sp._Cs1-4 1 1
Delftia_acidovorans_SPH-1 1 1
Acidovorax_citrulli_AAC00-1 1 1
Herminiimonas_arsenicoxydans 1 1
Janthinobacterium_sp._Marseille 1 1
Pusillimonas_sp._T7-7 1 1
Taylorella_asinigenitalis_MCE3 2 2
Bordetella_bronchiseptica_RB50 2 2
Achromobacter_xylosoxidans 1 1
Novosphingobium_aromaticivorans_DSM_12444 1 1
Methylobacterium_extorquens_AM1 1 1
Gallibacterium_anatis_UMN179 1 1
Haemophilus_parasuis_SH0165 2 2
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1 1
Frateuria_aurantia_DSM_6220 1 1
Photorhabdus_luminescens_subsp._laumondii_TTO1 1 1
Xenorhabdus_bovienii_SS-2004 1 1
Providencia_stuartii_MRSN_2154 1 1
Yersinia_pestis_Pestoides_F 1 1
Yersinia_enterocolitica_subsp._enterocolitica_8081 1 1
Serratia_sp._ATCC_39006 1 1
Sodalis_glossinidius_str._'morsitans' 5 5
Erwinia_billingiae_Eb661 1 1
Escherichia_blattae_DSM_4481 1 1
Cronobacter_turicensis_z3032 1 1
Cronobacter_sakazakii_ES15 1 1
Enterobacteriaceae_bacterium_strain_FGI_57 1 1
Shigella_sonnei_Ss046 1 1
Shigella_flexneri_5_str._8401 1 1
Shigella_dysenteriae_Sd197 1 1
Klebsiella_oxytoca_E718 1 1
Klebsiella_variicola_At-22 1 1
Enterobacter_aerogenes_KCTC_2190 2 2
Escherichia_fergusonii_ATCC_35469 2 2
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 1 1
Enterobacter_sp._638 2 2
Enterobacter_asburiae_LF7a 1 1
Pseudomonas_putida_F1 1 1
Pseudomonas_sp._VLB120 1 1

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Strains
Genome     Number   Proteins
Bacteroides_xylanisolvens_XB1A 1 1
Neisseria_gonorrhoeae_TCDC-NG08107 1 1
Neisseria_gonorrhoeae_FA_1090 1 1
Ralstonia_pickettii_12J 1 1
Variovorax_paradoxus_EPS 1 1
Bordetella_parapertussis_18323 1 1
Bordetella_bronchiseptica_253 1 1
Sinorhizobium_meliloti_SM11 2 2
Liberibacter_crescens_BT-1 2 2
Rhodopseudomonas_palustris_TIE-1 1 1
Aggregatibacter_actinomycetemcomitans_D11S-1 1 1
Pasteurella_multocida_subsp._multocida_str._HN06 1 1
Haemophilus_parasuis_ZJ0906 4 4
Haemophilus_influenzae_F3047 3 3
Haemophilus_influenzae_F3031 2 2
Haemophilus_influenzae_10810 2 2
Haemophilus_influenzae_PittGG 2 2
Haemophilus_influenzae_86-028NP 1 1
Haemophilus_influenzae_R2866 1 1
Stenotrophomonas_maltophilia_JV3 1 1
Morganella_morganii_subsp._morganii_KT 1 1
Yersinia_pestis_biovar_Microtus_str._91001 1 1
Yersinia_pestis_A1122 1 1
Yersinia_pestis_Z176003 1 1
Yersinia_pestis_D182038 1 1
Yersinia_pestis_D106004 1 1
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 1 1
Yersinia_pestis_Nepal516 1 1
Yersinia_pestis_Angola 1 1
Yersinia_pestis_CO92 1 1
Yersinia_pestis_KIM10+ 1 1
Serratia_liquefaciens_ATCC_27592 1 1
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 1 1
Cronobacter_sakazakii_CMCC_45402 2 2
Cronobacter_sakazakii_SP291 1 1
Cronobacter_sakazakii_ATCC_BAA-894 2 2
Raoultella_ornithinolytica_B6 1 1
Shigella_sonnei_53G 1 1
Shigella_flexneri_2002017 1 1
Shigella_dysenteriae_1617 1 1
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 1 1
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 2 2
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._AKU_12601 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._ATCC_9150 1 1
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 1 1
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 1 1
Klebsiella_pneumoniae_JM45 2 2
Klebsiella_pneumoniae_342 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 1 1
Escherichia_coli_E24377A 1 1
Escherichia_coli_E._coli_PMV-1 2 2
Escherichia_coli_JJ1886 1 1
Escherichia_coli_O7:K1_str._CE10 2 2
Escherichia_coli_O104:H4_str._2009EL-2050 2 2
Escherichia_coli_O104:H4_str._2009EL-2071 2 2
Escherichia_coli_O104:H4_str._2011C-3493 2 2
Escherichia_coli_NA114 1 1
Escherichia_coli_P12b 3 3
Escherichia_coli_str._'clone_D_i2' 1 1
Escherichia_coli_str._'clone_D_i14' 1 1
Escherichia_coli_UM146 2 2
Escherichia_coli_042 1 1
Escherichia_coli_Xuzhou21 3 3
Escherichia_coli_IHE3034 2 2
Escherichia_coli_UMNK88 2 2
Escherichia_coli_O83:H1_str._NRG_857C 2 2
Escherichia_coli_ABU_83972 1 1
Escherichia_coli_KO11FL 1 1
Escherichia_coli_KO11FL 1 1
Escherichia_coli_LF82 2 2
Escherichia_coli_ED1a 2 2
Escherichia_coli_UMN026 2 2
Escherichia_coli_55989 2 2
Escherichia_coli_S88 2 2
Escherichia_coli_IAI1 1 1
Escherichia_coli_W 1 1
Escherichia_coli_W 1 1
Escherichia_coli_BL21(DE3) 1 1
Escherichia_coli_BL21(DE3) 1 1
Escherichia_coli_SE15 1 1
Escherichia_coli_SE11 1 1
Escherichia_coli_APEC_O1 2 2
Escherichia_coli_O103:H2_str._12009 1 1
Escherichia_coli_UTI89 2 2
Escherichia_coli_536 1 1
Escherichia_coli_HS 1 1
Escherichia_coli_ETEC_H10407 1 1
Escherichia_coli_O55:H7_str._RM12579 3 3
Escherichia_coli_O55:H7_str._CB9615 4 4
Escherichia_coli_O26:H11_str._11368 5 5
Escherichia_coli_CFT073 1 1
Escherichia_coli_O111:H-_str._11128 3 3
Escherichia_coli_O127:H6_str._E2348/69 3 3
Escherichia_coli_O157:H7_str._TW14359 4 4
Escherichia_coli_O157:H7_str._EC4115 3 3
Escherichia_coli_O157:H7_str._Sakai 3 3
Escherichia_coli_O157:H7_str._EDL933 3 3
Escherichia_coli_BW2952 2 2
Escherichia_coli_str._K-12_substr._MG1655 1 1
Escherichia_coli_str._K-12_substr._W3110 1 1
Escherichia_coli_str._K-12_substr._DH10B 1 1
Escherichia_coli_B_str._REL606 1 1
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 3 3
Pseudomonas_syringae_pv._syringae_B728a 1 1
Pseudomonas_putida_H8234 1 1
Pseudomonas_putida_HB3267 2 2
Pseudomonas_putida_DOT-T1E 1 1
Pseudomonas_aeruginosa_MTB-1 1 1
Pseudomonas_aeruginosa_NCGM2.S1 1 1
Acinetobacter_baumannii_BJAB0868 1 1
Acinetobacter_baumannii_BJAB0715 1 1
Acinetobacter_baumannii__ATCC_19606 1 1
Acinetobacter_baumannii_AB0057 1 1

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Others
Genome     Number   Proteins
Ricinus_communis__(Early_assembly)   (Castor bean)   1 1
NCBI_plasmid_sequences_(Plasmids) 2 2
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 6 6
PDB_chains_(SCOP_1.75)_(PDB) 1 1
Protein_Data_Bank_(all_PDB_sequenc) 2 2
TargetDB__(Targets) 1 1
UniProt__viral_sequences_(Viral) 40 40
NCBI_viral_sequences_(Viral) 55 55
STRING_v9.0.5_(STRING) 105 105
Uniprot_2018_03_genome 1842 1842
NCBI_2017_08_genome 19606 19606

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.