SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for ORC1-binding domain superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a ORC1-binding domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Vanderwaltozyma_polyspora_DSM_70294_ 2 2
Kluyveromyces_thermotolerans_CBS_6340 4 4
Kluyveromyces_waltii 6 6
Zygosaccharomyces_rouxii_ 1 1
Saccharomyces_mikatae_MIT 2 1
Saccharomyces_paradoxus_MIT 2 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   6 5
Saccharomyces_bayanus_MIT 8 6

Strains
Genome     Number   Proteins
Saccharomyces_cerevisiae_UC5 3 2
Saccharomyces_cerevisiae_PW5 2 1
Saccharomyces_cerevisiae_CBS7960 3 2
Saccharomyces_cerevisiae_YJM269 2 1
Saccharomyces_cerevisiae_T7 3 2
Saccharomyces_cerevisiae_FostersB 2 1
Saccharomyces_cerevisiae_FostersO 1 1
Saccharomyces_cerevisiae_VL3 3 2
Saccharomyces_cerevisiae_Vin13 1 1
Saccharomyces_cerevisiae_LalvinQA23 1 1
Saccharomyces_cerevisiae_AWRI796 1 1
Saccharomyces_cerevisiae_Sigma1278b 2 1
Saccharomyces_cerevisiae_W303 3 2
Saccharomyces_cerevisiae_JAY291 2 1
Saccharomyces_cerevisiae_AWRI1631 2 1
Saccharomyces_cerevisiae_YPS163 3 2
Saccharomyces_cerevisiae_M22 2 1
Saccharomyces_cerevisiae_T73 2 1
Saccharomyces_cerevisiae_CLIB215 2 1
Saccharomyces_cerevisiae_YJM789_ 2 1
Saccharomyces_cerevisiae_YJM789 2 1
Saccharomyces_cerevisiae_RM11-1a 2 1
Saccharomyces_cerevisiae_RM11-1a_ 3 2
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   6 5

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Longest transcript per gene
Genome     Number   Proteins
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   6 5

Others
Genome     Number   Proteins
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 8 8
STRING_v9.0.5_(STRING) 13 12
NCBI_2017_08_genome 51 42
Uniprot_2018_03_genome 125 96
PDB_chains_(SCOP_1.75)_(PDB) 3 3
Protein_Data_Bank_(all_PDB_sequenc) 4 4

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