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Domain combinations for Gam-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Gam-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Rhodnius_prolixus_22 1 1
Musa_acuminata_22   (Wild Malaysian banana)   1 1
Naegleria_gruberi_ 1 1
Deinococcus_gobiensis_I-0 1 1
Deinococcus_proteolyticus_MRP 1 1
Acidaminococcus_intestini_RyC-MR95 1 1
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 1 1
Clostridium_thermocellum_ATCC_27405 1 1
butyrate-producing_bacterium_SS3/4 1 1
Syntrophobotulus_glycolicus_DSM_8271 4 4
Desulfotomaculum_ruminis_DSM_2154 1 1
Eubacterium_limosum_KIST612 2 2
Clostridium_novyi_NT 1 1
Clostridium_botulinum_A_str._ATCC_3502 1 1
Mahella_australiensis_50-1_BON 3 3
Caldicellulosiruptor_owensensis_OL 1 1
Halanaerobium_hydrogeniformans 1 1
Lactobacillus_casei_ATCC_334 1 1
Lactobacillus_buchneri 1 1
Lactococcus_lactis_subsp._cremoris_MG1363 1 1
Listeria_innocua_Clip11262 1 1
Geobacillus_thermoglucosidasius_C56-YS93 1 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1 1
Bacillus_clausii_KSM-K16 2 2
Niastella_koreensis_GR20-10 1 1
Marivirga_tractuosa_DSM_4126 1 1
Prevotella_intermedia_17 2 2
Alistipes_finegoldii_DSM_17242 1 1
Capnocytophaga_ochracea_DSM_7271 1 1
Planctomyces_limnophilus_DSM_3776 1 1
Opitutus_terrae_PB90-1 1 1
Fretibacterium_fastidiosum 1 1
Leptospira_interrogans_serovar_Lai_str._IPAV 1 1
Acidithiobacillus_ferrooxidans_ATCC_53993 1 1
Campylobacter_hominis_ATCC_BAA-381 1 1
Helicobacter_hepaticus_ATCC_51449 1 1
Helicobacter_felis_ATCC_49179 1 1
Desulfarculus_baarsii_DSM_2075 1 1
Syntrophus_aciditrophicus_SB 1 1
Desulfatibacillum_alkenivorans_AK-01 1 1
Desulfovibrio_aespoeensis_Aspo-2 1 1
Desulfovibrio_magneticus_RS-1 1 1
Desulfovibrio_alaskensis_G20 1 1
Desulfovibrio_africanus_str._Walvis_Bay 1 1
Neisseria_meningitidis_FAM18 1 1
Polaromonas_sp._JS666 1 1
Acidovorax_sp._KKS102 1 1
Sideroxydans_lithotrophicus_ES-1 1 1
Magnetococcus_marinus_MC-1 1 1
Rhodobacter_capsulatus_SB_1003 1 1
Magnetospirillum_magneticum_AMB-1 1 1
Azospirillum_lipoferum_4B 1 1
Gallibacterium_anatis_UMN179 1 1
Haemophilus_parasuis_SH0165 1 1
Haemophilus_ducreyi_35000HP 1 1
Methylococcus_capsulatus_str._Bath 1 1
Thioalkalivibrio_sulfidophilus_HL-EbGr7 1 1
Citrobacter_rodentium_ICC168 1 1
Azotobacter_vinelandii_DJ 1 1

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Strains
Genome     Number   Proteins
Clostridium_botulinum_BKT015925 1 1
Clostridium_botulinum_Ba4_str._657 1 1
Clostridium_botulinum_A2_str._Kyoto 1 1
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 1 1
Thermoanaerobacterium_thermosaccharolyticum_M0795 1 1
Halobacteroides_halobius_DSM_5150 1 1
Lactobacillus_plantarum_subsp._plantarum_P-8 1 1
Lactococcus_lactis_subsp._lactis_KLDS_4.0325 1 1
Lactococcus_lactis_subsp._lactis_CV56 1 1
Lactococcus_lactis_subsp._lactis_Il1403 1 1
Lactococcus_lactis_subsp._cremoris_NZ9000 1 1
Listeria_monocytogenes_M7 1 1
Listeria_monocytogenes_J1-220 2 2
Listeria_monocytogenes_SLCC2479 1 1
Listeria_monocytogenes_SLCC2540 1 1
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 1 1
Listeria_monocytogenes_08-5578 1 1
Listeria_monocytogenes_08-5923 1 1
Listeria_monocytogenes_L99 1 1
Listeria_monocytogenes_HCC23 1 1
Listeria_monocytogenes_FSL_R2-561 2 2
Bacillus_licheniformis_9945A 1 1
Bacillus_subtilis_subsp._natto_BEST195 1 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1 1
Bacillus_thuringiensis_HD-771 1 1
Staphylococcus_aureus_CA-347 1 1
Staphylococcus_aureus_Bmb9393 1 1
Staphylococcus_aureus_subsp._aureus_Z172 1 1
Staphylococcus_aureus_subsp._aureus_SA957 1 1
Staphylococcus_aureus_subsp._aureus_M013 1 1
Staphylococcus_aureus_subsp._aureus_str._JKD6008 1 1
Staphylococcus_aureus_subsp._aureus_NCTC_8325 1 1
Riemerella_anatipestifer_RA-CH-1 1 1
Leptospira_interrogans_serovar_Lai_str._56601 1 1
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 1 1
Fusobacterium_nucleatum_subsp._vincentii_3_1_36A2 1 1
Acidithiobacillus_ferrooxidans_ATCC_23270 1 1
Campylobacter_jejuni_RM1221 1 1
Campylobacter_jejuni_subsp._jejuni_00-2544 1 1
Campylobacter_jejuni_subsp._jejuni_00-2538 1 1
Campylobacter_jejuni_subsp._jejuni_00-2425 1 1
Campylobacter_jejuni_subsp._jejuni_ICDCCJ07001 1 1
Campylobacter_jejuni_subsp._jejuni_S3 1 1
Desulfovibrio_vulgaris_RCH1 1 1
Desulfovibrio_vulgaris_str._'Miyazaki_F' 1 1
Desulfovibrio_vulgaris_str._Hildenborough 1 1
Geobacter_sp._M18 1 1
Neisseria_meningitidis_WUE_2594 1 1
Neisseria_meningitidis_G2136 1 1
Neisseria_meningitidis_M01-240355 1 1
Neisseria_meningitidis_8013 1 1
Neisseria_meningitidis_053442 1 1
Neisseria_meningitidis_Z2491 1 1
Rhodopseudomonas_palustris_TIE-1 1 1
Mannheimia_succiniciproducens_MBEL55E 1 1
Bibersteinia_trehalosi_USDA-ARS-USMARC-192 1 1
Mannheimia_haemolytica_USMARC_2286 1 1
Mannheimia_haemolytica_M42548 1 1
Mannheimia_haemolytica_D174 1 1
Mannheimia_haemolytica_D153 1 1
Mannheimia_haemolytica_USDA-ARS-USMARC-183 1 1
Haemophilus_parasuis_ZJ0906 1 1
Haemophilus_influenzae_F3031 1 1
Haemophilus_influenzae_Rd_KW20 1 1
Shigella_sonnei_53G 1 1
Salmonella_bongori_N268-08 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 1 1
Enterobacter_aerogenes_EA1509E 1 1
Escherichia_coli_JJ1886 1 1
Escherichia_coli_LY180 1 1
Escherichia_coli_O7:K1_str._CE10 1 1
Escherichia_coli_NA114 1 1
Escherichia_coli_ABU_83972 1 1
Escherichia_coli_KO11FL 1 1
Escherichia_coli_KO11FL 1 1
Escherichia_coli_IAI39 1 1
Escherichia_coli_W 1 1
Escherichia_coli_W 1 1
Escherichia_coli_SE11 1 1
Escherichia_coli_O157:H7_str._Sakai 1 1
Azotobacter_vinelandii_CA6 1 1
Azotobacter_vinelandii_CA 1 1
Pseudomonas_aeruginosa_LES431 1 1
Pseudomonas_aeruginosa_NCGM2.S1 1 1
Pseudomonas_aeruginosa_LESB58 1 1
Acinetobacter_baumannii_BJAB0715 1 1
Acinetobacter_baumannii_TCDC-AB0715 1 1
Acinetobacter_baumannii_MDR-ZJ06 1 1

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Others
Genome     Number   Proteins
NCBI_plasmid_sequences_(Plasmids) 6 6
NCBI_viral_sequences_(Viral) 31 31
STRING_v9.0.5_(STRING) 49 49
Uniprot_2018_03_genome 1338 1337
Protein_Data_Bank_(all_PDB_sequenc) 2 2
NCBI_2017_08_genome 9647 9645
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 4 4
PDB_chains_(SCOP_1.75)_(PDB) 1 1
TargetDB__(Targets) 8 8
UniProt__viral_sequences_(Viral) 20 20

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