SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for Retroviral matrix proteins superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Retroviral matrix proteins domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   2 2
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1 1
Gorilla_gorilla_76_3.1   (Western gorilla)   1 1
Pongo_abelii_76_2   (Sumatran orangutan)   1 1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1 1
Cavia_porcellus_76_3   (Domestic guinea pig)   11 11
Oryctolagus_cuniculus_76_2   (Rabbit)   1 1
Sus_scrofa_76_10.2   (Pig)   16 16
Ovis_aries_76_3.1   (Sheep)   43 43
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1 1
Felis_catus_76_6.2   (Domestic cat)   66 65
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   11 11
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   5 5
Anolis_carolinensis_76_2.0   (Green anole)   10 10
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   2 2
Trypanosoma_congolense_2.4 3 3

Strains
Genome     Number   Proteins
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   1 1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1 1
Gorilla_gorilla_69_3.1   (Western gorilla)   1 1
Pongo_abelii_69_2   (Sumatran orangutan)   1 1
Cavia_porcellus_69_3   (Domestic guinea pig)   11 11
Sus_scrofa_69_10.2   (Pig)   16 16
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1 1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   5 5
Anolis_carolinensis_69_2.0   (Green anole)   2 2

Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   2 2
Homo_sapiens__(NCBI_version)   (Human)   1 1
Uniprot_2018_03_genome 57530 57523
PDB_chains_(SCOP_1.75)_(PDB) 13 13
STRING_v9.0.5_(STRING) 36 36
Protein_Data_Bank_(all_PDB_sequenc) 56 56
NCBI_viral_sequences_(Viral) 56 56
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 129 129
TargetDB__(Targets) 3 3
NCBI_2017_08_genome 1011 1009
UniProt__viral_sequences_(Viral) 26311 26305

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